==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATION 07-JUL-94 1TVT . COMPND 2 MOLECULE: TRANSACTIVATOR PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: EQUINE INFECTIOUS ANEMIA VIRUS; . AUTHOR P.ROESCH,D.WILLBOLD . 75 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5144.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 44.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 202 0, 0.0 2,-0.2 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 110.7 63.0 -13.1 6.7 2 2 A E - 0 0 107 1,-0.3 3,-0.1 3,-0.1 0, 0.0 -0.621 360.0 -70.2-134.1-165.3 63.6 -10.0 4.4 3 3 A D S S+ 0 0 22 -2,-0.2 2,-2.4 1,-0.1 -1,-0.3 -0.025 102.2 48.8 -80.0-168.9 61.5 -7.1 2.9 4 4 A R S S+ 0 0 36 43,-0.5 7,-1.8 1,-0.2 8,-0.7 -0.211 122.7 34.4 71.1 -51.6 58.9 -7.4 -0.0 5 5 A R S > S+ 0 0 109 -2,-2.4 3,-0.5 5,-0.3 -1,-0.2 -0.210 80.8 114.4-125.9 43.3 57.1 -10.4 1.7 6 6 A I T 3 S+ 0 0 58 38,-0.2 -1,-0.1 1,-0.2 -3,-0.1 0.936 84.9 38.5 -78.9 -46.4 57.4 -9.5 5.4 7 7 A P T 3 S- 0 0 68 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.012 125.7 -96.3 -92.1 29.9 53.7 -8.9 6.0 8 8 A G S < S+ 0 0 68 -3,-0.5 -3,-0.1 1,-0.1 -2,-0.1 0.768 94.9 122.7 64.0 23.2 52.7 -11.9 3.7 9 9 A T > - 0 0 5 35,-0.1 4,-2.5 -5,-0.1 5,-0.3 0.787 59.6-149.0 -85.4 -29.9 52.2 -9.4 0.8 10 10 A A T 4 S- 0 0 50 2,-0.2 -5,-0.3 1,-0.2 3,-0.2 0.993 78.5 -33.2 57.1 69.5 54.7 -11.0 -1.6 11 11 A E T 4 S- 0 0 50 -7,-1.8 -1,-0.2 1,-0.2 -6,-0.1 0.906 115.7 -62.1 53.9 43.0 55.8 -7.8 -3.4 12 12 A E T 4 S+ 0 0 48 -8,-0.7 -1,-0.2 33,-0.2 -2,-0.2 0.939 73.1 179.4 49.2 54.8 52.2 -6.5 -2.9 13 13 A N S < S- 0 0 104 -4,-2.5 -3,-0.1 -3,-0.2 -1,-0.1 0.825 83.5 -14.3 -55.6 -28.9 50.7 -9.3 -5.1 14 14 A L S S- 0 0 112 -5,-0.3 2,-0.2 1,-0.1 -1,-0.1 0.497 121.9 -55.8-138.6 -51.9 47.2 -7.8 -4.4 15 15 A Q - 0 0 91 -6,-0.2 3,-0.1 1,-0.1 -1,-0.1 -0.855 34.7-116.8 171.1 156.0 47.5 -5.2 -1.5 16 16 A K S S- 0 0 49 1,-0.3 2,-0.3 11,-0.2 -1,-0.1 0.989 90.7 -20.3 -74.4 -62.8 48.7 -5.0 2.2 17 17 A S S S+ 0 0 36 10,-0.5 -1,-0.3 5,-0.1 3,-0.1 -0.985 77.0 121.4-150.4 135.5 45.4 -4.1 4.0 18 18 A S + 0 0 53 1,-0.3 2,-0.5 -2,-0.3 5,-0.1 0.264 55.0 76.3-155.8 -61.0 42.1 -2.6 2.6 19 19 A G S S- 0 0 75 1,-0.2 -1,-0.3 2,-0.1 2,-0.1 -0.543 120.8 -0.7 -69.7 113.8 38.8 -4.7 3.1 20 20 A G S S+ 0 0 89 -2,-0.5 -1,-0.2 -3,-0.1 -3,-0.0 -0.190 148.3 17.0 97.9 -41.1 37.9 -4.3 6.8 21 21 A V + 0 0 99 -2,-0.1 -2,-0.1 1,-0.1 -3,-0.0 -0.771 56.8 161.8-165.7 114.1 40.9 -2.0 7.6 22 22 A P - 0 0 56 0, 0.0 -5,-0.1 0, 0.0 -3,-0.1 0.862 24.7-160.0 -99.2 -64.5 43.1 -0.1 5.1 23 23 A G > - 0 0 22 -5,-0.1 4,-1.5 3,-0.1 3,-0.3 0.937 11.6-149.1 80.9 83.7 44.9 2.7 7.1 24 24 A Q H >> S+ 0 0 104 1,-0.2 4,-0.8 3,-0.2 3,-0.6 0.915 100.3 55.4 -49.3 -44.1 46.1 5.4 4.7 25 25 A N H 34 S+ 0 0 84 1,-0.3 10,-3.0 2,-0.2 9,-0.9 0.927 109.7 44.6 -55.7 -47.4 49.0 6.0 7.2 26 26 A T H 34 S- 0 0 51 -3,-0.3 -1,-0.3 8,-0.2 -2,-0.2 0.687 142.3 -72.9 -72.2 -17.5 50.1 2.3 6.9 27 27 A G H << S+ 0 0 4 -4,-1.5 -10,-0.5 -3,-0.6 -11,-0.2 0.601 75.6 150.2 122.5 74.8 49.6 2.5 3.0 28 28 A G S < S- 0 0 30 -4,-0.8 -4,-0.1 -12,-0.1 -12,-0.1 0.874 82.5 -20.0 -95.6 -74.5 45.9 2.6 1.9 29 29 A Q S S+ 0 0 172 -11,-0.0 3,-0.1 2,-0.0 -5,-0.0 0.837 147.4 40.1-102.0 -54.0 45.7 4.6 -1.4 30 30 A E S S- 0 0 80 1,-0.2 2,-1.7 -6,-0.0 -5,-0.1 0.843 84.0-167.8 -63.1 -34.1 49.0 6.6 -1.4 31 31 A A + 0 0 30 -7,-0.2 14,-0.2 1,-0.1 -1,-0.2 -0.088 66.4 73.6 71.7 -41.0 50.8 3.4 0.0 32 32 A R + 0 0 94 -2,-1.7 -6,-0.1 13,-0.1 -5,-0.1 -0.719 69.6 90.0-107.5 85.5 54.0 5.5 0.9 33 33 A P S S- 0 0 31 0, 0.0 -8,-0.1 0, 0.0 -7,-0.1 0.322 95.8 -28.6-137.4 -92.7 53.5 7.8 4.0 34 34 A N S > S+ 0 0 108 -9,-0.9 3,-2.5 3,-0.2 -8,-0.2 0.619 88.7 112.8-116.1 -5.9 54.0 7.0 7.8 35 35 A Y T 3 S- 0 0 32 -10,-3.0 -9,-0.1 1,-0.3 -1,-0.1 0.750 121.7 -11.0 -20.3 -49.9 53.5 3.2 8.0 36 36 A H T >>>S- 0 0 7 -11,-0.2 3,-2.4 -3,-0.1 4,-2.1 -0.324 111.0 -97.4-149.6 33.6 57.3 3.2 8.8 37 37 A a T <45 - 0 0 58 -3,-2.5 -3,-0.2 1,-0.3 -2,-0.1 0.763 65.1 -75.5 36.4 46.8 57.6 7.0 7.8 38 38 A Q T 345S+ 0 0 61 1,-0.2 -1,-0.3 15,-0.0 -4,-0.1 0.770 137.4 52.1 42.9 37.7 58.8 6.0 4.3 39 39 A L T <45S+ 0 0 37 -3,-2.4 -2,-0.2 14,-0.1 -1,-0.2 0.251 92.5 61.1-154.3 -56.3 62.2 5.2 6.0 40 40 A a T <5S+ 0 0 67 -4,-2.1 -3,-0.2 1,-0.1 3,-0.0 0.859 80.3 157.0 -49.6 -36.7 61.6 2.9 8.9 41 41 A F < + 0 0 3 -5,-1.0 2,-3.2 1,-0.2 -1,-0.1 0.065 31.7 93.2 36.1-152.2 60.2 0.5 6.1 42 42 A L S S+ 0 0 99 1,-0.1 2,-0.9 -3,-0.1 -1,-0.2 -0.176 84.2 66.2 68.1 -55.3 60.2 -3.3 7.0 43 43 A R S S- 0 0 158 -2,-3.2 2,-0.4 -37,-0.1 -2,-0.1 -0.718 122.5 -5.4-101.6 84.6 56.5 -2.9 8.3 44 44 A S S S+ 0 0 11 -2,-0.9 -38,-0.2 1,-0.2 -35,-0.1 -0.974 73.6 170.2 135.7-109.0 54.5 -2.1 5.1 45 45 A L - 0 0 1 -2,-0.4 -33,-0.2 -14,-0.2 -1,-0.2 0.906 26.9-153.5 71.3 99.0 56.7 -1.6 1.9 46 46 A G S S- 0 0 21 -15,-0.1 2,-0.2 -35,-0.1 -1,-0.1 0.068 82.9 -4.7 -88.5 22.8 54.9 -1.4 -1.4 47 47 A I S S- 0 0 19 26,-0.1 2,-1.9 -3,-0.1 -43,-0.5 -0.931 112.8 -52.5 174.8-173.6 58.1 -2.7 -3.2 48 48 A D + 0 0 27 25,-2.9 24,-0.9 -2,-0.2 25,-0.5 -0.642 68.4 179.1 -80.4 85.1 61.7 -3.6 -2.1 49 49 A Y + 0 0 2 -2,-1.9 2,-3.1 1,-0.2 23,-0.6 0.920 15.6 175.6 -63.4 -46.5 61.9 -0.1 -0.6 50 50 A L - 0 0 31 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.0 -0.415 66.8 -84.1 73.4 -68.3 65.4 -0.2 0.9 51 51 A D - 0 0 2 -2,-3.1 2,-1.1 -3,-0.2 8,-0.3 0.324 42.8-162.1 131.1 90.6 64.7 3.5 1.8 52 52 A A S S+ 0 0 23 -3,-0.2 -2,-0.1 1,-0.1 -13,-0.1 -0.280 88.4 46.9 -89.5 52.5 65.3 6.1 -1.1 53 53 A S S S+ 0 0 62 -2,-1.1 -1,-0.1 -14,-0.1 -14,-0.1 0.220 135.1 5.5-150.8 -61.7 65.4 9.0 1.4 54 54 A L S S+ 0 0 98 1,-0.0 4,-0.2 3,-0.0 -2,-0.1 0.808 76.5 179.3 -97.2 -39.5 67.7 7.9 4.3 55 55 A R - 0 0 64 -4,-0.3 2,-3.3 1,-0.2 -3,-0.1 0.353 41.6-123.0 54.4 -5.6 68.8 4.5 2.6 56 56 A K S S- 0 0 107 1,-0.2 -1,-0.2 2,-0.1 -5,-0.0 -0.252 87.0 -19.8 67.0 -56.7 71.0 3.8 5.8 57 57 A K S S+ 0 0 141 -2,-3.3 -1,-0.2 3,-0.0 -2,-0.1 -0.097 118.7 84.3-175.1 58.3 74.1 3.5 3.3 58 58 A N >> + 0 0 50 -4,-0.2 3,-1.6 1,-0.2 2,-1.6 0.609 64.6 72.5-130.5 -63.2 73.0 2.9 -0.3 59 59 A K T 34 S+ 0 0 15 -8,-0.3 -1,-0.2 1,-0.2 7,-0.2 -0.428 107.7 37.0 -65.6 88.4 72.1 6.1 -2.4 60 60 A Q T 34 S+ 0 0 129 -2,-1.6 -1,-0.2 2,-0.3 6,-0.1 -0.145 98.4 77.6 160.4 -41.5 75.7 7.3 -2.8 61 61 A R T <4 S+ 0 0 157 -3,-1.6 2,-0.2 2,-0.1 -2,-0.1 0.976 92.9 47.5 -56.2 -64.0 77.7 4.0 -3.2 62 62 A L S X S- 0 0 112 -4,-0.6 2,-2.5 1,-0.1 4,-1.4 -0.600 90.1-119.9 -83.2 143.4 76.9 3.3 -6.9 63 63 A K T 4 S+ 0 0 152 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.1 -0.390 113.0 26.2 -79.3 65.1 77.3 6.2 -9.5 64 64 A A T >> S+ 0 0 55 -2,-2.5 3,-1.3 3,-0.0 4,-1.0 -0.098 106.9 70.3 173.5 -49.4 73.5 5.8 -10.3 65 65 A I T 34 S+ 0 0 49 1,-0.3 -2,-0.1 2,-0.2 -6,-0.1 0.852 87.7 70.0 -58.3 -33.8 71.8 4.4 -7.2 66 66 A Q T 3< S+ 0 0 93 -4,-1.4 -1,-0.3 -7,-0.2 -7,-0.1 0.868 118.5 20.4 -53.0 -33.8 72.5 7.8 -5.4 67 67 A Q T <4 S+ 0 0 100 -3,-1.3 -2,-0.2 1,-0.1 -8,-0.1 0.831 74.1 135.2 -97.4 -82.2 69.8 9.2 -7.8 68 68 A G < - 0 0 25 -4,-1.0 2,-1.3 1,-0.1 -3,-0.1 0.582 69.4-121.8 43.9 15.7 67.5 6.2 -9.2 69 69 A R S S+ 0 0 210 -3,-0.0 -1,-0.1 0, 0.0 -4,-0.0 -0.302 93.5 19.4 52.9 -85.1 64.3 8.4 -8.5 70 70 A Q S S- 0 0 56 -2,-1.3 -21,-0.0 1,-0.1 0, 0.0 0.137 95.7-111.5 -88.2-152.9 62.8 5.7 -6.1 71 71 A P S S- 0 0 9 0, 0.0 -21,-0.1 0, 0.0 -1,-0.1 0.497 74.6 -29.3-114.0-102.4 65.0 2.9 -4.5 72 72 A Q S > S- 0 0 73 -24,-0.9 3,-1.3 -23,-0.6 -23,-0.2 0.639 80.9-176.0 -94.6 -13.7 64.9 -0.9 -5.3 73 73 A Y T 3 - 0 0 85 -25,-0.5 -25,-2.9 -24,-0.2 -1,-0.1 -0.032 56.9 -41.0 50.7-157.1 61.2 -0.7 -6.3 74 74 A L T 3 0 0 83 -27,-0.3 -1,-0.2 1,-0.1 -25,-0.1 0.003 360.0 360.0 -92.1 32.4 59.4 -4.1 -7.2 75 75 A L < 0 0 163 -3,-1.3 -2,-0.2 -27,-0.2 -1,-0.1 0.813 360.0 360.0-107.0 360.0 62.4 -5.4 -9.2