==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 21-JUL-04 1U36 . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6087.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 58.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 35 35.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 A N 0 0 141 0, 0.0 2,-0.4 0, 0.0 90,-0.1 0.000 360.0 360.0 360.0 -35.5 43.8 36.6 7.4 2 248 A L + 0 0 15 88,-0.4 90,-0.5 80,-0.1 2,-0.3 -0.813 360.0 171.1-100.3 139.6 45.0 33.0 7.0 3 249 A K - 0 0 116 -2,-0.4 22,-1.7 22,-0.2 2,-0.8 -0.927 35.0-146.2-156.7 126.2 47.1 31.4 9.7 4 250 A I E -A 24 0A 5 88,-0.4 20,-0.2 -2,-0.3 3,-0.1 -0.846 23.0-179.7 -80.8 110.1 48.5 28.1 10.6 5 251 A V E - 0 0 70 18,-2.6 2,-0.3 -2,-0.8 19,-0.2 0.922 61.9 -20.3 -82.7 -44.4 48.5 28.3 14.4 6 252 A R E -A 23 0A 169 17,-1.3 17,-2.7 -3,-0.1 -1,-0.3 -0.982 51.7-150.5-158.0 158.6 49.9 24.9 15.1 7 253 A M E -A 22 0A 19 -2,-0.3 15,-0.2 15,-0.2 3,-0.1 -0.983 16.4-141.6-130.7 142.1 50.4 21.5 13.5 8 254 A D S S+ 0 0 93 13,-2.5 2,-0.3 -2,-0.3 14,-0.1 0.599 93.4 25.4 -83.2 -6.4 50.6 18.2 15.4 9 255 A R - 0 0 109 12,-0.4 -1,-0.2 1,-0.0 3,-0.0 -0.966 56.2-174.9-150.5 134.8 53.3 16.9 13.1 10 256 A T S S+ 0 0 84 -2,-0.3 87,-2.3 -3,-0.1 2,-0.3 0.111 71.5 48.9-119.9 21.0 55.9 18.9 11.1 11 257 A A E +e 97 0B 17 85,-0.2 2,-0.3 87,-0.0 87,-0.2 -0.978 58.5 163.2-147.8 164.2 57.5 16.0 9.3 12 258 A G E -e 98 0B 0 85,-2.3 87,-2.3 -2,-0.3 2,-0.1 -0.985 39.9 -75.3-173.7 168.1 56.5 12.9 7.3 13 259 A C E > -e 99 0B 8 -2,-0.3 3,-1.8 85,-0.2 5,-0.2 -0.365 38.2-122.3 -74.3 144.3 57.4 10.2 4.9 14 260 A V T 3 S+ 0 0 0 85,-2.2 53,-2.6 1,-0.3 -1,-0.1 0.718 107.6 71.5 -53.4 -25.3 57.9 11.0 1.2 15 261 A T T 3 S- 0 0 51 84,-0.3 -1,-0.3 51,-0.2 51,-0.2 0.689 90.9-158.9 -69.5 -16.8 55.2 8.4 0.4 16 262 A G < + 0 0 12 -3,-1.8 -1,-0.2 49,-0.2 50,-0.1 -0.110 55.2 109.6 69.8-167.9 52.5 10.7 1.8 17 263 A G + 0 0 47 47,-3.0 2,-0.4 1,-0.2 -1,-0.1 0.640 48.7 137.9 72.1 18.3 49.1 9.7 3.0 18 264 A E - 0 0 65 -5,-0.2 46,-2.2 47,-0.1 2,-0.4 -0.775 55.5-117.4-101.3 135.6 49.9 10.4 6.7 19 265 A E E + B 0 63A 105 -2,-0.4 2,-0.4 44,-0.2 44,-0.2 -0.561 37.3 171.7 -78.3 127.6 47.3 12.1 8.8 20 266 A I E - B 0 62A 1 42,-3.0 42,-2.8 -2,-0.4 2,-0.4 -0.967 19.1-146.5-128.5 148.7 48.3 15.5 10.3 21 267 A W E - B 0 61A 128 -2,-0.4 -13,-2.5 40,-0.2 -12,-0.4 -0.923 12.9-170.6-110.4 141.9 46.1 18.0 12.1 22 268 A L E -AB 7 60A 0 38,-2.3 38,-2.4 -2,-0.4 2,-0.4 -0.976 15.3-144.1-129.8 145.5 46.5 21.7 12.0 23 269 A L E +AB 6 59A 81 -17,-2.7 -18,-2.6 -2,-0.4 -17,-1.3 -0.900 31.3 174.3 -98.4 138.8 44.8 24.5 14.0 24 270 A C E -A 4 0A 7 34,-2.1 -20,-0.2 -2,-0.4 3,-0.1 -0.901 37.7 -97.3-136.7 164.4 44.1 27.6 12.0 25 271 A D S S- 0 0 63 -22,-1.7 -22,-0.2 -2,-0.3 -20,-0.1 -0.288 81.8 -50.6 -66.5 171.9 42.4 31.0 12.2 26 272 A K + 0 0 116 -24,-0.1 2,-0.3 -2,-0.1 32,-0.2 -0.224 68.5 175.4 -62.2 126.8 38.9 30.8 10.8 27 273 A V - 0 0 8 30,-2.1 2,-0.6 -3,-0.1 5,-0.1 -0.794 34.4-115.7-117.8 164.8 38.5 29.3 7.3 28 274 A Q > - 0 0 110 3,-0.3 3,-2.6 -2,-0.3 -2,-0.0 -0.929 25.8-138.4 -99.5 120.8 35.6 28.4 5.0 29 275 A K T 3 S+ 0 0 86 -2,-0.6 3,-0.4 1,-0.3 24,-0.1 0.735 102.0 44.6 -55.0 -29.5 35.5 24.6 4.7 30 276 A D T 3 S+ 0 0 122 1,-0.2 -1,-0.3 21,-0.1 3,-0.0 0.352 114.1 51.3 -94.2 3.3 34.7 24.7 1.0 31 277 A D S < S+ 0 0 36 -3,-2.6 2,-0.3 54,-0.1 -3,-0.3 -0.286 91.8 89.1-134.2 45.5 37.3 27.5 0.2 32 278 A I + 0 0 6 -3,-0.4 2,-0.3 52,-0.2 52,-0.2 -1.000 40.9 172.9-146.8 139.9 40.5 26.2 1.8 33 279 A Q E -F 83 0B 34 50,-1.7 50,-2.0 -2,-0.3 2,-0.5 -0.935 27.0-131.5-138.7 167.4 43.4 24.1 0.7 34 280 A I E -F 82 0B 0 13,-0.3 13,-2.8 -2,-0.3 2,-0.5 -0.974 25.9-162.3-124.7 113.4 46.7 23.1 2.3 35 281 A R E -FG 81 46B 29 46,-2.9 46,-2.6 -2,-0.5 2,-0.4 -0.887 10.1-165.6-111.1 123.3 49.6 23.6 -0.0 36 282 A F E +FG 80 45B 0 9,-3.2 9,-2.5 -2,-0.5 2,-0.3 -0.843 25.7 171.2 -97.8 134.1 53.0 22.0 0.4 37 283 A Y E -FG 79 44B 26 42,-2.5 42,-2.7 -2,-0.4 2,-0.3 -0.990 27.1-163.9-148.9 162.7 55.7 23.5 -1.8 38 284 A E E - G 0 43B 31 5,-2.1 5,-2.5 -2,-0.3 2,-0.5 -0.967 19.4-137.9-148.7 123.3 59.4 23.7 -2.6 39 285 A E 0 0 139 -2,-0.3 -2,-0.0 3,-0.2 5,-0.0 -0.740 360.0 360.0 -80.2 125.3 61.2 26.4 -4.6 40 286 A E 0 0 146 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 -0.018 360.0 360.0-102.5 360.0 63.8 24.7 -7.0 41 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 291 A V 0 0 108 0, 0.0 2,-0.3 0, 0.0 -3,-0.2 0.000 360.0 360.0 360.0 115.2 58.3 25.2 -7.9 43 292 A W E -G 38 0B 37 -5,-2.5 -5,-2.1 2,-0.0 2,-0.3 -0.685 360.0-179.7 -83.1 137.9 57.0 21.8 -6.7 44 293 A E E +G 37 0B 83 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.991 11.4 174.4-137.6 152.9 53.6 21.8 -5.0 45 294 A G E -G 36 0B 10 -9,-2.5 -9,-3.2 -2,-0.3 2,-0.4 -0.953 22.1-130.4-147.4 159.1 51.4 19.2 -3.5 46 295 A F E -G 35 0B 71 -2,-0.3 -11,-0.2 -11,-0.2 20,-0.1 -0.932 19.8-109.2-125.0 139.3 48.2 19.4 -1.6 47 296 A G - 0 0 11 -13,-2.8 2,-0.7 -2,-0.4 -13,-0.3 -0.349 35.5-125.9 -57.5 139.9 46.8 18.1 1.6 48 297 A D B +C 63 0A 104 15,-3.0 15,-2.1 -15,-0.1 2,-0.3 -0.824 56.2 119.9 -98.6 110.3 44.1 15.4 1.0 49 298 A F - 0 0 38 -2,-0.7 13,-0.1 13,-0.2 -15,-0.1 -0.981 48.1-131.5-158.6 161.2 40.9 16.3 2.9 50 299 A S > - 0 0 44 -2,-0.3 3,-2.2 11,-0.2 4,-0.3 -0.760 40.0 -99.6-108.6 169.9 37.2 17.0 2.4 51 300 A P G > S+ 0 0 47 0, 0.0 3,-1.3 0, 0.0 -20,-0.1 0.784 122.7 64.2 -57.8 -27.7 35.1 19.9 3.9 52 301 A T G 3 S+ 0 0 118 1,-0.3 -23,-0.0 3,-0.1 -3,-0.0 0.669 93.7 62.4 -68.2 -18.1 33.9 17.4 6.5 53 302 A D G < S+ 0 0 63 -3,-2.2 8,-2.2 -24,-0.1 2,-0.7 0.463 82.6 92.1 -85.3 -4.0 37.5 17.2 7.7 54 303 A V E < S-D 60 0A 4 -3,-1.3 2,-0.9 -4,-0.3 6,-0.2 -0.846 76.1-143.5 -91.2 115.0 37.5 20.9 8.6 55 304 A H E >> -D 59 0A 128 4,-2.6 3,-2.2 -2,-0.7 4,-0.6 -0.735 65.5 -41.5 -91.4 103.8 36.4 21.1 12.2 56 305 A R T 34 S- 0 0 181 -2,-0.9 -1,-0.2 1,-0.3 4,-0.1 0.811 105.0 -69.1 50.5 35.5 34.1 24.1 12.9 57 306 A Q T 34 S+ 0 0 41 2,-0.2 -30,-2.1 -3,-0.1 -1,-0.3 0.450 128.3 81.1 72.0 3.8 36.3 26.3 10.7 58 307 A F T <4 S+ 0 0 109 -3,-2.2 -34,-2.1 1,-0.2 2,-0.3 0.397 90.1 30.7-125.6 -2.6 39.2 26.2 13.1 59 308 A A E < -BD 23 55A 14 -4,-0.6 -4,-2.6 -36,-0.3 2,-0.4 -0.985 58.0-155.5-152.7 157.1 41.1 23.0 12.5 60 309 A I E -BD 22 54A 0 -38,-2.4 -38,-2.3 -2,-0.3 2,-0.5 -0.994 3.4-158.9-138.0 128.2 41.8 20.7 9.6 61 310 A C E +B 21 0A 29 -8,-2.2 2,-0.3 -2,-0.4 -11,-0.2 -0.931 34.1 152.4-103.9 128.6 42.6 17.0 9.6 62 311 A F E -B 20 0A 3 -42,-2.8 -42,-3.0 -2,-0.5 2,-0.4 -0.927 42.3-113.1-149.3 169.2 44.3 15.9 6.4 63 312 A K E -BC 19 48A 83 -15,-2.1 -15,-3.0 -2,-0.3 -44,-0.2 -0.909 37.4-112.4-111.5 138.4 46.7 13.5 4.8 64 313 A T - 0 0 3 -46,-2.2 -47,-3.0 -2,-0.4 2,-0.2 -0.273 29.7-117.6 -62.8 150.9 50.0 14.6 3.4 65 314 A P - 0 0 15 0, 0.0 -49,-0.2 0, 0.0 2,-0.2 -0.516 36.0 -94.7 -80.3 158.4 50.7 14.6 -0.3 66 315 A K - 0 0 121 -51,-0.2 -51,-0.2 -2,-0.2 -52,-0.1 -0.482 45.2-116.1 -66.3 140.6 53.3 12.4 -1.7 67 316 A Y - 0 0 13 -53,-2.6 3,-0.2 -2,-0.2 -1,-0.1 -0.361 26.5-105.8 -79.8 164.5 56.6 14.3 -2.2 68 317 A K S S+ 0 0 97 1,-0.2 2,-0.5 -2,-0.1 -1,-0.1 0.818 109.3 35.0 -63.0 -29.4 58.0 14.8 -5.7 69 318 A D > - 0 0 64 1,-0.1 3,-1.0 -55,-0.0 -1,-0.2 -0.904 56.3-178.6-134.1 102.8 60.7 12.2 -5.2 70 319 A V T 3 S+ 0 0 47 -2,-0.5 31,-0.5 1,-0.2 -55,-0.1 0.468 81.9 66.6 -77.9 -2.1 60.1 9.1 -3.2 71 320 A N T 3 + 0 0 140 29,-0.1 -1,-0.2 -57,-0.1 2,-0.1 0.060 69.2 136.1-106.5 20.7 63.7 8.0 -3.7 72 321 A I < - 0 0 32 -3,-1.0 29,-0.2 1,-0.1 -58,-0.1 -0.369 44.7-151.5 -67.7 156.9 65.5 10.7 -1.8 73 322 A T S S+ 0 0 133 27,-0.1 -1,-0.1 2,-0.1 3,-0.0 0.697 75.7 24.5-102.5 -32.0 68.3 9.8 0.5 74 323 A K S S- 0 0 153 1,-0.1 -1,-0.1 25,-0.1 24,-0.0 -0.837 102.8 -67.0-132.3 164.8 68.2 12.5 3.2 75 324 A P - 0 0 73 0, 0.0 2,-0.5 0, 0.0 24,-0.2 -0.231 41.7-144.3 -59.2 147.4 65.3 14.7 4.4 76 325 A A E - H 0 98B 12 22,-2.5 22,-2.9 -4,-0.1 2,-0.5 -0.969 10.2-141.9-119.6 117.6 63.9 17.4 2.1 77 326 A S E + H 0 97B 76 -2,-0.5 20,-0.2 20,-0.2 2,-0.2 -0.738 32.4 159.4 -86.9 124.2 62.8 20.6 3.6 78 327 A V E - H 0 96B 0 18,-3.3 18,-2.2 -2,-0.5 2,-0.3 -0.659 32.1-115.0-130.5-178.4 59.6 22.1 2.2 79 328 A F E -FH 37 95B 77 -42,-2.7 -42,-2.5 16,-0.2 2,-0.4 -0.898 14.4-153.9-122.6 156.9 57.0 24.6 3.3 80 329 A V E +FH 36 94B 0 14,-2.3 14,-2.3 -2,-0.3 2,-0.3 -0.997 18.6 169.8-127.4 136.8 53.3 24.3 4.0 81 330 A Q E -F 35 0B 12 -46,-2.6 -46,-2.9 -2,-0.4 2,-0.3 -0.985 34.0-117.4-136.9 152.5 50.7 27.1 3.8 82 331 A L E -F 34 0B 0 10,-0.3 9,-2.2 -2,-0.3 2,-0.3 -0.671 35.7-172.2 -74.1 147.4 47.0 27.6 3.9 83 332 A R E -FI 33 90B 41 -50,-2.0 -50,-1.7 -2,-0.3 2,-0.3 -0.970 22.6-130.2-144.8 131.9 45.5 28.9 0.7 84 333 A R > - 0 0 51 5,-2.6 4,-1.4 -2,-0.3 -52,-0.2 -0.583 12.7-147.4 -75.0 133.6 42.1 30.1 -0.3 85 334 A K T 4 S+ 0 0 119 -2,-0.3 -1,-0.1 1,-0.2 -53,-0.1 0.881 92.5 55.1 -70.6 -31.8 40.8 28.5 -3.4 86 335 A S T 4 S+ 0 0 85 -55,-0.2 -1,-0.2 1,-0.2 -54,-0.0 0.923 129.3 5.4 -73.4 -49.1 38.8 31.6 -4.4 87 336 A D T 4 S- 0 0 87 2,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.304 92.0-121.6-123.4 4.9 41.4 34.4 -4.4 88 337 A L < + 0 0 98 -4,-1.4 -3,-0.1 1,-0.2 2,-0.1 0.641 52.0 161.3 61.0 20.5 44.6 32.4 -3.7 89 338 A E - 0 0 97 -6,-0.1 -5,-2.6 1,-0.0 2,-0.3 -0.454 22.7-156.6 -68.6 143.9 45.4 34.4 -0.6 90 339 A T B -I 83 0B 56 -7,-0.2 -88,-0.4 -2,-0.1 -7,-0.2 -0.841 14.7-123.6-124.9 159.2 47.9 32.4 1.6 91 340 A S - 0 0 3 -9,-2.2 -88,-0.2 -2,-0.3 3,-0.1 -0.500 50.0 -83.3 -83.6 165.2 49.1 32.1 5.2 92 341 A E - 0 0 161 -90,-0.5 -88,-0.4 -2,-0.2 -10,-0.3 -0.429 61.5-104.5 -56.8 144.2 52.7 32.6 6.1 93 342 A P - 0 0 42 0, 0.0 -12,-0.2 0, 0.0 -1,-0.1 -0.397 25.6-149.4 -79.9 157.2 54.4 29.3 5.5 94 343 A K E - H 0 80B 84 -14,-2.3 -14,-2.3 -2,-0.1 2,-0.1 -0.972 26.3-110.3-117.8 141.5 55.5 26.7 8.1 95 344 A P E - H 0 79B 81 0, 0.0 2,-0.3 0, 0.0 -16,-0.2 -0.405 35.6-175.5 -70.7 146.7 58.6 24.5 7.5 96 345 A F E - H 0 78B 2 -18,-2.2 -18,-3.3 -2,-0.1 2,-0.6 -0.992 14.8-143.5-144.9 134.7 57.9 20.7 7.0 97 346 A L E -eH 11 77B 76 -87,-2.3 -85,-2.3 -2,-0.3 2,-0.4 -0.899 6.6-160.6-108.2 119.5 60.4 18.0 6.6 98 347 A Y E -eH 12 76B 0 -22,-2.9 -22,-2.5 -2,-0.6 -85,-0.2 -0.782 16.2-165.9 -88.5 136.3 59.9 15.1 4.2 99 348 A Y E -e 13 0B 78 -87,-2.3 -85,-2.2 -2,-0.4 -84,-0.3 -0.910 24.4 -93.6-125.2 155.9 62.0 12.0 5.0 100 349 A P 0 0 36 0, 0.0 -29,-0.1 0, 0.0 -27,-0.1 -0.113 360.0 360.0 -61.2 153.8 62.9 8.8 3.1 101 350 A E 0 0 201 -31,-0.5 0, 0.0 -29,-0.2 0, 0.0 -0.495 360.0 360.0 -70.7 360.0 60.9 5.6 3.5