==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 21-JUL-04 1U37 . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING, . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.FENG,J.-F.LONG,L.-N.CHAN,C.HE,A.FU,J.XIA,N.Y.IP,M.ZHANG . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4855.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 25.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 17 A E 0 0 146 0, 0.0 88,-0.9 0, 0.0 86,-0.1 0.000 360.0 360.0 360.0 88.4 -2.9 -6.0 -10.8 2 18 A F E -A 88 0A 125 86,-0.2 2,-0.4 84,-0.1 86,-0.2 -0.315 360.0-162.9 -65.3 148.2 0.4 -4.2 -10.4 3 19 A K E -A 87 0A 49 84,-1.7 2,-2.3 2,-0.0 84,-2.1 -0.905 21.0-145.3-143.1 114.8 0.1 -0.4 -9.8 4 20 A D E -A 86 0A 108 -2,-0.4 2,-0.3 82,-0.2 82,-0.2 -0.501 31.9-160.8 -75.3 78.2 2.8 2.2 -10.1 5 21 A V E -A 85 0A 0 -2,-2.3 80,-2.2 80,-1.7 2,-0.6 -0.489 9.7-167.2 -68.2 123.2 1.5 4.2 -7.2 6 22 A F E -A 84 0A 78 -2,-0.3 2,-0.9 78,-0.2 78,-0.2 -0.905 3.0-172.9-115.0 102.9 2.8 7.8 -7.2 7 23 A I E -A 83 0A 0 76,-1.8 76,-0.5 -2,-0.6 2,-0.4 -0.830 6.6-168.0-101.0 103.1 2.1 9.5 -3.9 8 24 A E E +A 82 0A 132 -2,-0.9 74,-0.3 74,-0.3 2,-0.3 -0.751 19.8 147.5 -92.8 132.8 3.0 13.2 -4.2 9 25 A K - 0 0 16 72,-1.5 2,-0.3 -2,-0.4 6,-0.1 -0.877 48.0 -76.3-150.0-179.5 3.3 15.3 -1.1 10 26 A Q > - 0 0 147 -2,-0.3 3,-1.0 1,-0.1 71,-0.2 -0.680 58.3 -91.9 -89.2 139.5 5.1 18.3 0.5 11 27 A K T 3 S+ 0 0 149 -2,-0.3 68,-0.3 1,-0.3 -1,-0.1 -0.213 116.4 34.6 -49.9 126.1 8.6 17.8 1.9 12 28 A G T 3 S+ 0 0 30 66,-1.6 2,-0.4 1,-0.3 67,-0.3 0.587 96.2 110.2 99.9 14.7 8.4 16.9 5.5 13 29 A E < - 0 0 112 65,-3.1 67,-0.4 -3,-1.0 -1,-0.3 -0.986 61.0-134.2-127.5 131.2 5.2 14.8 5.1 14 30 A I - 0 0 61 -2,-0.4 64,-0.2 1,-0.1 61,-0.1 -0.482 25.8-113.9 -81.1 151.7 4.8 11.0 5.3 15 31 A L - 0 0 1 59,-0.6 27,-1.7 62,-0.2 28,-0.2 0.916 40.6-132.4 -47.8 -52.1 2.9 9.0 2.8 16 32 A G + 0 0 1 1,-0.3 21,-3.0 25,-0.2 2,-0.4 0.599 59.7 128.0 104.9 16.3 0.3 8.1 5.4 17 33 A V E -D 36 0B 6 19,-0.2 2,-0.6 57,-0.1 -1,-0.3 -0.869 42.9-158.0-109.0 139.3 0.1 4.3 4.7 18 34 A V E -D 35 0B 59 17,-2.8 17,-2.0 -2,-0.4 16,-1.0 -0.877 15.5-175.4-118.1 98.7 0.4 1.6 7.3 19 35 A I E -D 33 0B 0 -2,-0.6 2,-0.3 14,-0.3 14,-0.3 -0.697 4.8-161.1 -95.5 146.6 1.5 -1.7 5.8 20 36 A V E -D 32 0B 51 12,-1.8 12,-1.0 -2,-0.3 2,-0.9 -0.859 41.2 -76.7-123.5 158.4 1.8 -5.0 7.8 21 37 A E - 0 0 130 -2,-0.3 10,-0.2 10,-0.2 2,-0.2 -0.339 53.2-137.6 -56.0 95.8 3.5 -8.3 7.2 22 38 A S + 0 0 0 -2,-0.9 -1,-0.1 1,-0.2 -3,-0.0 -0.386 38.9 158.9 -59.8 122.6 1.1 -9.8 4.7 23 39 A G + 0 0 66 -2,-0.2 -1,-0.2 6,-0.1 -2,-0.1 0.239 28.4 121.7-131.2 11.7 0.6 -13.5 5.6 24 40 A W S S- 0 0 121 1,-0.1 2,-1.1 2,-0.1 -2,-0.0 0.016 78.2 -90.5 -66.5-179.7 -2.7 -14.3 3.9 25 41 A G S S+ 0 0 85 3,-0.1 2,-0.3 4,-0.0 -1,-0.1 -0.575 94.0 73.5 -96.9 71.6 -3.0 -17.1 1.4 26 42 A S S S- 0 0 69 -2,-1.1 -2,-0.1 1,-0.3 0, 0.0 -0.934 84.9 -7.3-174.5 151.6 -2.4 -15.1 -1.8 27 43 A I S S- 0 0 75 -2,-0.3 -1,-0.3 1,-0.1 3,-0.0 0.151 103.3 -42.2 45.6-169.9 0.3 -13.5 -3.9 28 44 A L - 0 0 75 25,-0.1 -6,-0.1 -3,-0.1 -1,-0.1 -0.798 67.6-114.4 -92.7 117.4 3.8 -13.2 -2.4 29 45 A P + 0 0 71 0, 0.0 35,-0.5 0, 0.0 -6,-0.1 -0.186 69.3 114.0 -50.0 132.0 3.9 -12.2 1.3 30 46 A T S S- 0 0 4 -10,-0.2 2,-0.3 33,-0.2 40,-0.1 0.184 71.6 -17.0-162.5 -61.8 5.4 -8.8 1.8 31 47 A V - 0 0 0 23,-0.4 2,-0.4 -10,-0.2 -10,-0.2 -0.991 41.3-153.3-160.6 156.6 3.2 -6.0 3.1 32 48 A I E -D 20 0B 32 -12,-1.0 2,-3.5 -2,-0.3 -12,-1.8 -0.941 25.7-129.5-139.8 116.6 -0.5 -5.0 3.5 33 49 A I E +D 19 0B 0 19,-2.7 18,-1.6 -2,-0.4 19,-0.3 -0.291 39.2 169.1 -61.4 71.5 -1.8 -1.4 3.7 34 50 A A E + 0 0 38 -2,-3.5 2,-0.3 -16,-1.0 -1,-0.2 0.874 66.0 14.8 -55.3 -38.8 -3.7 -2.2 6.8 35 51 A N E -D 18 0B 101 -17,-2.0 -17,-2.8 -3,-0.2 2,-0.3 -0.883 63.6-177.4-134.6 165.5 -4.3 1.5 7.3 36 52 A M E -D 17 0B 10 -2,-0.3 -19,-0.2 -19,-0.3 -20,-0.1 -0.847 40.2 -96.8-167.4 126.3 -4.1 4.7 5.3 37 53 A M > - 0 0 94 -21,-3.0 2,-2.7 -2,-0.3 3,-0.9 -0.198 40.9-120.9 -47.2 119.9 -4.7 8.4 6.1 38 54 A H T 3 S- 0 0 164 1,-0.3 -1,-0.2 4,-0.1 -22,-0.0 -0.384 101.9 -1.2 -66.9 75.4 -8.3 9.1 5.0 39 55 A G T 3 S+ 0 0 39 -2,-2.7 -1,-0.3 1,-0.2 -2,-0.1 0.224 104.7 124.1 126.4 -12.2 -7.2 11.9 2.6 40 56 A G S <> S- 0 0 15 -3,-0.9 4,-2.9 -24,-0.1 -1,-0.2 0.121 85.0 -69.4 -66.2-172.2 -3.5 11.9 3.1 41 57 A P H > S+ 0 0 18 0, 0.0 4,-2.0 0, 0.0 -33,-0.2 0.882 135.5 50.8 -47.0 -47.7 -0.8 11.4 0.3 42 58 A A H >>S+ 0 0 0 -27,-1.7 5,-0.8 1,-0.2 4,-0.7 0.938 117.0 38.4 -58.5 -49.7 -1.8 7.8 -0.1 43 59 A E H 45S+ 0 0 79 -6,-0.5 -1,-0.2 -28,-0.2 3,-0.1 0.766 109.1 66.3 -72.2 -25.6 -5.5 8.6 -0.4 44 60 A K H <5S+ 0 0 158 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.933 96.0 53.1 -60.9 -48.5 -4.6 11.6 -2.4 45 61 A S H <5S- 0 0 37 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.811 101.3-139.7 -57.8 -30.1 -3.2 9.6 -5.3 46 62 A G T <5S+ 0 0 62 -4,-0.7 -3,-0.1 2,-0.2 -2,-0.1 0.771 79.8 87.8 74.3 25.8 -6.5 7.8 -5.4 47 63 A K < + 0 0 85 -5,-0.8 2,-0.4 1,-0.2 -4,-0.1 0.710 66.4 70.2-117.3 -54.5 -4.8 4.5 -6.0 48 64 A L + 0 0 4 -6,-0.7 2,-0.4 4,-0.0 -2,-0.2 -0.576 57.6 178.9 -75.6 125.1 -3.8 2.9 -2.7 49 65 A N - 0 0 82 -2,-0.4 3,-0.3 -3,-0.1 -16,-0.1 -0.953 46.5 -85.1-132.6 112.4 -6.8 1.7 -0.7 50 66 A I S S+ 0 0 72 -2,-0.4 -16,-0.2 1,-0.2 -14,-0.1 0.323 119.2 41.8 -13.6 114.6 -6.4 0.0 2.7 51 67 A G S S+ 0 0 35 -18,-1.6 2,-0.3 1,-0.4 -1,-0.2 0.334 77.8 140.1 116.7 -3.2 -5.7 -3.6 2.0 52 68 A D - 0 0 4 -19,-0.3 -19,-2.7 -3,-0.3 2,-1.5 -0.542 53.2-132.4 -74.9 133.6 -3.4 -3.1 -1.0 53 69 A Q E -B 88 0A 3 35,-1.9 35,-1.7 -2,-0.3 -21,-0.2 -0.621 26.9-154.1 -89.1 81.2 -0.4 -5.5 -1.1 54 70 A I E -B 87 0A 1 -2,-1.5 -23,-0.4 33,-0.3 33,-0.3 -0.163 14.7-172.6 -53.6 145.2 2.4 -3.1 -1.7 55 71 A M E - 0 0 13 31,-1.7 7,-3.7 1,-0.4 8,-0.6 0.750 60.4 -12.0-110.2 -41.6 5.4 -4.6 -3.5 56 72 A S E -BC 86 61A 27 30,-1.4 30,-0.5 5,-0.3 2,-0.5 -0.990 52.9-134.4-159.9 158.8 8.1 -1.9 -3.5 57 73 A I E > S-BC 85 60A 3 3,-1.6 3,-0.9 -2,-0.3 28,-0.3 -0.975 83.4 -26.2-125.5 121.8 8.6 1.8 -2.8 58 74 A N T 3 S- 0 0 73 26,-1.2 27,-0.2 -2,-0.5 -1,-0.1 0.767 135.8 -39.1 49.4 27.0 10.6 4.1 -5.1 59 75 A G T 3 S+ 0 0 74 25,-0.6 2,-0.7 1,-0.2 -1,-0.3 0.651 110.3 127.8 98.0 19.4 12.5 1.0 -6.1 60 76 A T E < -C 57 0A 61 -3,-0.9 -3,-1.6 10,-0.0 -1,-0.2 -0.847 53.9-141.2-113.1 95.8 12.6 -0.7 -2.7 61 77 A S E -C 56 0A 72 -2,-0.7 -5,-0.3 -5,-0.3 4,-0.1 -0.321 10.6-165.1 -56.5 125.4 11.3 -4.2 -2.8 62 78 A L > + 0 0 0 -7,-3.7 3,-0.6 2,-0.1 2,-0.4 0.463 57.7 106.8 -91.0 -3.5 9.2 -4.9 0.4 63 79 A V T 3 S+ 0 0 52 -8,-0.6 -33,-0.2 1,-0.2 -2,-0.0 -0.637 85.3 13.7 -80.5 128.6 9.3 -8.7 -0.3 64 80 A G T 3 S+ 0 0 79 -35,-0.5 -1,-0.2 -2,-0.4 -2,-0.1 0.130 105.0 102.7 96.5 -20.8 11.6 -10.6 2.0 65 81 A L S < S- 0 0 34 -3,-0.6 -1,-0.3 1,-0.1 5,-0.1 -0.780 71.4-119.3 -99.9 141.7 12.0 -7.8 4.4 66 82 A P > - 0 0 69 0, 0.0 4,-1.5 0, 0.0 3,-0.2 0.105 35.7 -93.3 -63.9-176.4 10.2 -7.6 7.8 67 83 A L H > S+ 0 0 53 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.832 121.2 66.3 -70.8 -32.9 7.8 -4.9 8.9 68 84 A S H > S+ 0 0 80 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.892 104.5 44.7 -55.4 -41.8 10.5 -3.0 10.6 69 85 A T H > S+ 0 0 54 -3,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.951 114.5 46.9 -68.2 -50.6 12.1 -2.3 7.2 70 86 A C H X S+ 0 0 0 -4,-1.5 4,-2.3 1,-0.2 3,-0.4 0.933 111.6 51.6 -57.1 -48.8 8.9 -1.4 5.4 71 87 A Q H X S+ 0 0 42 -4,-3.4 4,-2.9 1,-0.3 5,-0.2 0.921 107.7 52.2 -54.3 -47.6 7.9 0.9 8.3 72 88 A S H X S+ 0 0 79 -4,-1.9 4,-2.4 -5,-0.3 -1,-0.3 0.832 107.5 53.6 -59.2 -32.5 11.2 2.7 8.1 73 89 A I H < S+ 0 0 27 -4,-1.6 4,-0.4 -3,-0.4 -1,-0.2 0.936 110.8 44.6 -68.0 -46.0 10.6 3.1 4.4 74 90 A I H >< S+ 0 0 6 -4,-2.3 3,-0.8 1,-0.2 -59,-0.6 0.894 115.7 47.8 -64.1 -40.8 7.3 4.8 5.0 75 91 A K H 3< S+ 0 0 127 -4,-2.9 3,-0.5 1,-0.2 -1,-0.2 0.869 109.3 53.2 -68.3 -36.9 8.7 6.9 7.7 76 92 A G T 3< S+ 0 0 41 -4,-2.4 3,-0.5 1,-0.2 -1,-0.2 0.526 90.8 80.1 -75.8 -4.4 11.7 7.8 5.6 77 93 A L < + 0 0 5 -3,-0.8 3,-0.3 -4,-0.4 -1,-0.2 -0.125 62.9 101.5 -93.2 36.3 9.2 9.0 2.9 78 94 A K S S+ 0 0 103 -3,-0.5 -65,-3.1 1,-0.2 -66,-1.6 0.880 87.4 29.7 -85.7 -44.5 8.6 12.3 4.7 79 95 A N S S+ 0 0 89 -3,-0.5 -1,-0.2 -68,-0.3 -68,-0.2 -0.467 91.6 95.0-116.8 61.4 10.8 14.5 2.6 80 96 A Q S S- 0 0 62 -67,-0.4 -1,-0.1 -3,-0.3 -69,-0.1 0.683 72.6-141.7-113.8 -35.4 10.6 12.9 -0.9 81 97 A S S S+ 0 0 19 -68,-0.3 -72,-1.5 -3,-0.2 2,-0.3 0.103 79.3 28.6 90.2 -19.1 7.8 14.9 -2.5 82 98 A R E -A 8 0A 115 -74,-0.3 2,-0.5 -72,-0.0 -74,-0.3 -0.967 66.1-143.0-167.3 151.5 6.6 11.7 -4.2 83 99 A V E -A 7 0A 0 -76,-0.5 -76,-1.8 -2,-0.3 2,-1.5 -0.926 2.9-165.5-128.6 110.2 6.5 8.0 -3.8 84 100 A K E +A 6 0A 95 -2,-0.5 -26,-1.2 -78,-0.2 2,-0.6 -0.612 30.8 159.1 -90.9 75.6 6.9 5.6 -6.7 85 101 A L E -AB 5 57A 0 -80,-2.2 -80,-1.7 -2,-1.5 2,-0.8 -0.898 32.8-148.1-107.7 119.1 5.7 2.4 -5.0 86 102 A N E -AB 4 56A 40 -2,-0.6 -31,-1.7 -30,-0.5 -30,-1.4 -0.745 24.1-173.1 -86.5 111.5 4.5 -0.5 -7.1 87 103 A I E -AB 3 54A 0 -84,-2.1 -84,-1.7 -2,-0.8 2,-0.5 -0.460 20.7-116.9 -99.9 174.2 1.7 -2.3 -5.2 88 104 A V E AB 2 53A 11 -35,-1.7 -35,-1.9 -86,-0.2 -86,-0.2 -0.956 360.0 360.0-118.1 128.4 -0.1 -5.5 -5.9 89 105 A R 0 0 150 -88,-0.9 -37,-0.1 -2,-0.5 -87,-0.0 -0.786 360.0 360.0-114.7 360.0 -3.9 -5.8 -6.5