==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 23-JUL-04 1U3Z . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6334.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 34.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 A N 0 0 142 0, 0.0 2,-0.4 0, 0.0 93,-0.1 0.000 360.0 360.0 360.0 13.2 43.8 36.3 7.3 2 248 A L + 0 0 18 91,-0.3 93,-0.5 83,-0.1 2,-0.3 -0.710 360.0 169.8 -92.3 136.0 45.0 32.7 6.8 3 249 A K - 0 0 112 -2,-0.4 22,-1.8 91,-0.2 2,-0.8 -0.958 34.6-145.3-151.2 128.2 47.1 31.2 9.5 4 250 A I E +A 24 0A 3 91,-0.3 20,-0.2 -2,-0.3 3,-0.1 -0.876 23.7 180.0 -83.8 107.9 48.5 27.8 10.4 5 251 A V E - 0 0 72 18,-2.3 2,-0.3 -2,-0.8 19,-0.2 0.902 61.6 -16.7 -80.1 -45.0 48.4 27.9 14.2 6 252 A R E -A 23 0A 180 17,-1.6 17,-3.1 3,-0.0 2,-0.4 -0.982 50.2-158.5-159.6 149.8 49.8 24.4 14.9 7 253 A M E -A 22 0A 18 -2,-0.3 15,-0.2 15,-0.2 3,-0.1 -0.990 18.3-143.2-125.2 139.1 50.4 21.1 13.2 8 254 A D S S+ 0 0 101 13,-2.7 2,-0.3 -2,-0.4 14,-0.1 0.675 92.2 29.7 -77.6 -14.5 50.8 17.9 15.1 9 255 A R - 0 0 107 12,-0.3 -1,-0.1 1,-0.0 3,-0.1 -0.992 54.7-179.3-140.1 139.5 53.4 16.6 12.7 10 256 A T S S+ 0 0 83 -2,-0.3 90,-2.2 -3,-0.1 2,-0.3 0.053 72.2 51.8-126.9 20.5 55.9 18.8 10.6 11 257 A A E +e 100 0B 20 88,-0.2 2,-0.3 69,-0.0 90,-0.2 -0.966 59.5 164.6-147.7 162.8 57.5 15.9 8.9 12 258 A G E -e 101 0B 0 88,-2.2 90,-2.2 -2,-0.3 2,-0.1 -0.979 39.6 -80.5-172.4 162.5 56.4 12.9 6.9 13 259 A C E > -e 102 0B 9 -2,-0.3 3,-2.1 88,-0.2 5,-0.2 -0.411 38.2-120.2 -75.0 146.0 57.5 10.1 4.5 14 260 A V T 3 S+ 0 0 0 88,-2.1 56,-2.2 1,-0.3 -1,-0.1 0.735 107.1 71.6 -54.6 -25.2 57.9 10.8 0.8 15 261 A T T 3 S- 0 0 49 54,-0.2 -1,-0.3 1,-0.2 54,-0.2 0.701 91.8-155.2 -69.4 -14.7 55.2 8.2 -0.0 16 262 A G < + 0 0 11 -3,-2.1 -1,-0.2 52,-0.2 53,-0.1 -0.179 57.0 109.7 74.1-171.1 52.5 10.5 1.4 17 263 A G + 0 0 46 50,-3.2 2,-0.4 1,-0.2 -1,-0.1 0.612 48.0 141.5 77.8 14.2 49.2 9.4 2.7 18 264 A E - 0 0 67 -5,-0.2 49,-2.0 49,-0.1 2,-0.3 -0.740 53.2-115.6 -97.1 138.2 49.9 10.2 6.3 19 265 A E E + B 0 66A 122 -2,-0.4 2,-0.4 47,-0.2 47,-0.2 -0.493 35.2 178.0 -72.5 126.5 47.4 11.8 8.7 20 266 A I E - B 0 65A 6 45,-3.1 45,-2.3 -2,-0.3 2,-0.5 -0.968 19.2-148.8-127.3 143.9 48.1 15.3 10.0 21 267 A M E - B 0 64A 97 -2,-0.4 -13,-2.7 43,-0.2 2,-0.4 -0.959 19.7-171.8-112.2 128.7 45.9 17.4 12.2 22 268 A L E -AB 7 63A 0 41,-2.6 41,-2.3 -2,-0.5 2,-0.5 -0.955 15.4-150.7-125.5 131.7 46.2 21.1 11.7 23 269 A L E +AB 6 62A 78 -17,-3.1 -18,-2.3 -2,-0.4 -17,-1.6 -0.916 27.8 170.6-102.0 132.8 44.8 24.0 13.7 24 270 A C E -A 4 0A 5 37,-1.8 -20,-0.2 -2,-0.5 3,-0.1 -0.890 38.2-100.4-132.2 159.9 44.1 27.2 11.7 25 271 A D S S- 0 0 72 -22,-1.8 -22,-0.2 -2,-0.3 -20,-0.1 -0.261 80.2 -45.9 -66.0 174.1 42.4 30.5 12.1 26 272 A K + 0 0 55 35,-0.1 2,-0.3 -24,-0.1 35,-0.2 -0.173 70.0 168.3 -57.7 132.3 38.9 30.6 10.6 27 273 A V - 0 0 9 33,-1.9 2,-0.5 -3,-0.1 5,-0.1 -0.852 37.0-114.3-129.0 164.5 38.6 29.1 7.1 28 274 A Q > - 0 0 117 3,-0.3 3,-2.2 -2,-0.3 -2,-0.0 -0.935 24.0-136.0-101.1 124.6 35.6 28.1 4.9 29 275 A K T 3 S+ 0 0 104 -2,-0.5 3,-0.4 1,-0.3 27,-0.1 0.712 103.2 43.2 -54.2 -27.1 35.4 24.3 4.4 30 276 A D T 3 S+ 0 0 107 1,-0.2 -1,-0.3 24,-0.1 3,-0.0 0.426 114.6 51.6 -98.6 -1.8 34.7 24.6 0.6 31 277 A D S < S+ 0 0 37 -3,-2.2 2,-0.3 57,-0.1 -3,-0.3 -0.314 91.6 90.8-128.7 45.6 37.2 27.3 -0.0 32 278 A I + 0 0 6 -3,-0.4 2,-0.3 55,-0.2 55,-0.2 -0.997 39.7 172.2-149.0 137.5 40.4 26.0 1.5 33 279 A Q E -F 86 0B 35 53,-1.7 53,-2.3 -2,-0.3 2,-0.5 -0.914 26.9-134.4-134.9 160.3 43.4 23.9 0.4 34 280 A I E -F 85 0B 0 16,-0.3 16,-3.0 -2,-0.3 2,-0.5 -0.989 26.6-163.8-120.3 110.1 46.7 22.9 2.0 35 281 A R E -FG 84 49B 31 49,-2.6 49,-2.4 -2,-0.5 2,-0.5 -0.899 10.0-164.3-104.8 122.1 49.6 23.4 -0.4 36 282 A F E +FG 83 48B 0 12,-3.4 12,-2.5 -2,-0.5 2,-0.3 -0.908 25.2 172.6 -97.0 133.1 53.0 21.8 0.1 37 283 A Y E -FG 82 47B 24 45,-2.6 45,-2.6 -2,-0.5 2,-0.4 -0.982 26.3-164.2-145.5 160.3 55.6 23.5 -2.2 38 284 A E E - G 0 46B 31 8,-2.1 8,-1.9 -2,-0.3 2,-0.6 -0.985 21.1-135.3-143.7 126.2 59.3 23.6 -3.0 39 285 A E E - G 0 45B 149 -2,-0.4 6,-0.2 6,-0.2 2,-0.1 -0.750 25.5-144.6 -81.1 118.8 61.1 26.3 -5.0 40 286 A E > - 0 0 42 4,-2.7 3,-1.0 -2,-0.6 -1,-0.0 -0.422 18.0-121.8 -76.1 158.0 63.5 24.6 -7.5 41 287 A E T 3 S+ 0 0 116 1,-0.2 -1,-0.1 2,-0.1 4,-0.0 0.769 112.6 63.2 -68.8 -27.4 66.9 26.2 -8.4 42 288 A N T 3 S- 0 0 132 1,-0.1 -1,-0.2 2,-0.0 3,-0.1 0.168 125.8-100.7 -80.3 17.7 65.8 26.1 -12.0 43 289 A G S < S+ 0 0 67 -3,-1.0 -2,-0.1 1,-0.3 -1,-0.1 0.295 86.1 130.3 75.8 -10.1 62.9 28.6 -11.2 44 290 A G - 0 0 25 -5,-0.1 -4,-2.7 1,-0.0 2,-0.3 -0.188 47.3-149.5 -65.4 162.2 60.5 25.6 -11.2 45 291 A V E -G 39 0B 75 -6,-0.2 -6,-0.2 -3,-0.1 2,-0.2 -0.859 1.2-152.7-141.7 108.3 58.1 25.1 -8.2 46 292 A W E +G 38 0B 40 -8,-1.9 -8,-2.1 -2,-0.3 2,-0.3 -0.543 21.7 179.7 -70.7 141.6 56.9 21.6 -7.1 47 293 A E E +G 37 0B 84 -10,-0.2 2,-0.3 -2,-0.2 -10,-0.2 -0.990 13.0 173.4-144.1 145.5 53.5 21.6 -5.4 48 294 A G E -G 36 0B 9 -12,-2.5 -12,-3.4 -2,-0.3 2,-0.4 -0.947 22.6-130.7-142.0 163.9 51.3 19.0 -3.9 49 295 A F E -G 35 0B 69 -2,-0.3 -14,-0.2 -14,-0.2 20,-0.1 -0.925 20.5-109.2-125.1 138.0 48.1 19.3 -2.0 50 296 A G - 0 0 12 -16,-3.0 2,-0.7 -2,-0.4 -16,-0.3 -0.369 37.2-123.8 -59.7 142.4 46.8 17.8 1.3 51 297 A D B +C 66 0A 109 15,-3.2 15,-1.9 -18,-0.1 2,-0.3 -0.791 57.6 114.8 -99.3 111.1 44.1 15.2 0.7 52 298 A F - 0 0 41 -2,-0.7 13,-0.1 13,-0.2 11,-0.0 -0.970 49.9-127.5-165.6 166.6 40.9 15.9 2.5 53 299 A S > - 0 0 44 -2,-0.3 3,-2.0 11,-0.2 4,-0.2 -0.741 39.8 -98.5-116.6 162.9 37.2 16.8 1.9 54 300 A P G > S+ 0 0 46 0, 0.0 3,-1.5 0, 0.0 -25,-0.1 0.806 122.0 63.3 -52.1 -31.5 35.2 19.7 3.4 55 301 A T G 3 S+ 0 0 124 1,-0.3 -26,-0.0 3,-0.1 -3,-0.0 0.723 92.8 64.7 -67.5 -19.7 33.8 17.3 6.0 56 302 A D G < S+ 0 0 68 -3,-2.0 8,-2.0 -27,-0.1 2,-0.6 0.492 80.9 94.6 -79.8 -3.9 37.4 17.0 7.3 57 303 A V E < S-D 63 0A 12 -3,-1.5 2,-0.9 -4,-0.2 6,-0.2 -0.817 74.8-142.3 -91.9 121.1 37.4 20.7 8.3 58 304 A H E >> -D 62 0A 122 4,-2.7 3,-2.3 -2,-0.6 4,-0.6 -0.780 65.1 -43.2 -98.6 102.6 36.4 20.9 11.9 59 305 A R T 34 S- 0 0 173 -2,-0.9 -1,-0.2 1,-0.3 4,-0.1 0.790 104.3 -68.9 50.9 37.1 34.1 23.8 12.6 60 306 A Q T 34 S+ 0 0 74 2,-0.2 -33,-1.9 1,-0.1 -1,-0.3 0.454 129.3 80.3 65.9 5.5 36.2 26.1 10.4 61 307 A F T <4 S+ 0 0 115 -3,-2.3 -37,-1.8 1,-0.2 2,-0.3 0.353 90.8 31.2-126.5 1.7 39.2 26.0 12.9 62 308 A A E < -BD 23 58A 10 -4,-0.6 -4,-2.7 -39,-0.2 2,-0.4 -0.980 57.2-156.6-154.7 157.8 41.0 22.7 12.2 63 309 A I E -BD 22 57A 0 -41,-2.3 -41,-2.6 -2,-0.3 2,-0.5 -0.995 4.8-157.4-139.6 132.4 41.6 20.4 9.3 64 310 A C E +B 21 0A 42 -8,-2.0 2,-0.3 -2,-0.4 -11,-0.2 -0.933 34.3 150.9-102.3 132.2 42.5 16.7 9.2 65 311 A F E -B 20 0A 2 -45,-2.3 -45,-3.1 -2,-0.5 2,-0.4 -0.941 42.2-114.8-153.1 166.1 44.2 15.7 6.1 66 312 A K E -BC 19 51A 83 -15,-1.9 -15,-3.2 -2,-0.3 -47,-0.2 -0.927 37.8-111.0-110.3 142.6 46.7 13.3 4.5 67 313 A T - 0 0 3 -49,-2.0 -50,-3.2 -2,-0.4 2,-0.2 -0.326 29.8-117.2 -66.5 150.4 50.0 14.4 3.1 68 314 A P - 0 0 15 0, 0.0 -52,-0.2 0, 0.0 2,-0.2 -0.471 35.7 -94.4 -79.1 157.4 50.7 14.3 -0.6 69 315 A K - 0 0 122 -54,-0.2 -54,-0.2 -2,-0.2 -55,-0.1 -0.472 43.7-119.0 -64.1 133.9 53.3 12.2 -2.1 70 316 A Y - 0 0 11 -56,-2.2 3,-0.2 -2,-0.2 -1,-0.1 -0.403 26.7-106.2 -72.3 161.9 56.6 14.1 -2.6 71 317 A K S S+ 0 0 100 1,-0.2 2,-0.5 -2,-0.1 -1,-0.1 0.820 108.3 37.3 -62.2 -29.6 57.9 14.6 -6.1 72 318 A D > - 0 0 69 1,-0.1 3,-1.0 2,-0.0 -1,-0.2 -0.912 55.6-178.3-133.1 101.1 60.7 12.0 -5.6 73 319 A V T 3 S+ 0 0 48 -2,-0.5 31,-0.5 1,-0.2 -58,-0.1 0.458 82.6 64.9 -75.8 2.1 60.1 8.9 -3.5 74 320 A N T 3 + 0 0 131 29,-0.1 -1,-0.2 -60,-0.1 -2,-0.0 0.174 66.3 131.6-112.7 14.0 63.8 7.9 -4.0 75 321 A I < - 0 0 30 -3,-1.0 29,-0.2 1,-0.1 -61,-0.1 -0.347 45.7-154.0 -61.8 153.4 65.5 10.7 -2.2 76 322 A T S S+ 0 0 133 27,-0.1 -1,-0.1 2,-0.1 -3,-0.0 0.477 75.6 33.5-112.2 -9.8 68.2 9.4 0.2 77 323 A K S S- 0 0 153 24,-0.0 -1,-0.1 25,-0.0 24,-0.0 -0.913 103.3 -71.9-137.3 164.2 68.2 12.3 2.7 78 324 A P - 0 0 70 0, 0.0 2,-0.5 0, 0.0 24,-0.2 -0.273 38.7-145.8 -62.7 146.1 65.3 14.6 3.9 79 325 A A E - H 0 101B 12 22,-2.5 22,-3.0 -4,-0.1 2,-0.5 -0.945 11.1-141.5-112.4 123.0 63.9 17.2 1.6 80 326 A S E + H 0 100B 84 -2,-0.5 20,-0.2 20,-0.2 2,-0.2 -0.769 31.8 160.0 -89.4 128.4 62.7 20.5 3.2 81 327 A V E - H 0 99B 2 18,-3.3 18,-2.1 -2,-0.5 2,-0.3 -0.662 32.2-115.2-131.4-178.1 59.5 22.0 1.8 82 328 A F E -FH 37 98B 90 -45,-2.6 -45,-2.6 16,-0.2 2,-0.4 -0.931 15.6-155.9-120.9 161.1 57.0 24.5 2.9 83 329 A V E +FH 36 97B 0 14,-2.0 14,-2.5 -2,-0.3 2,-0.3 -0.995 17.9 169.1-133.4 136.5 53.3 24.1 3.7 84 330 A Q E -F 35 0B 13 -49,-2.4 -49,-2.6 -2,-0.4 2,-0.3 -0.982 35.4-114.7-139.3 154.5 50.7 26.9 3.5 85 331 A L E -F 34 0B 0 10,-0.3 9,-2.3 -2,-0.3 2,-0.3 -0.683 36.5-172.3 -74.9 142.7 46.9 27.4 3.7 86 332 A R E -FI 33 93B 40 -53,-2.3 -53,-1.7 -2,-0.3 2,-0.4 -0.980 22.7-131.0-141.2 133.1 45.5 28.8 0.4 87 333 A R > - 0 0 52 5,-2.8 4,-1.3 -2,-0.3 -55,-0.2 -0.645 13.7-147.8 -77.8 132.3 42.0 30.0 -0.4 88 334 A K T 4 S+ 0 0 120 -2,-0.4 -1,-0.1 2,-0.2 -56,-0.1 0.873 91.1 54.9 -69.0 -34.2 40.8 28.4 -3.7 89 335 A S T 4 S+ 0 0 85 1,-0.2 -1,-0.2 -58,-0.2 -57,-0.0 0.949 130.0 6.0 -70.7 -55.0 38.7 31.4 -4.7 90 336 A D T 4 S- 0 0 88 2,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.193 94.1-121.3-116.5 8.3 41.3 34.3 -4.6 91 337 A L < + 0 0 97 -4,-1.3 -3,-0.1 1,-0.2 2,-0.1 0.622 51.0 163.7 55.3 20.2 44.5 32.3 -3.9 92 338 A E - 0 0 78 -6,-0.1 -5,-2.8 1,-0.0 2,-0.3 -0.410 20.7-156.9 -56.5 144.5 45.3 34.1 -0.7 93 339 A T B -I 86 0B 56 -7,-0.2 -91,-0.3 -91,-0.1 -7,-0.2 -0.894 14.6-124.9-129.5 155.0 47.8 32.3 1.4 94 340 A S - 0 0 3 -9,-2.3 -91,-0.2 -2,-0.3 3,-0.1 -0.471 49.2 -83.6 -78.9 168.5 49.0 31.9 4.9 95 341 A E - 0 0 162 -93,-0.5 -91,-0.3 -2,-0.1 -10,-0.3 -0.417 61.6-105.0 -62.5 147.2 52.6 32.4 5.9 96 342 A P - 0 0 44 0, 0.0 -12,-0.2 0, 0.0 -1,-0.1 -0.443 24.6-148.8 -80.4 154.0 54.4 29.1 5.3 97 343 A K E - H 0 83B 85 -14,-2.5 -14,-2.0 -2,-0.1 2,-0.1 -0.965 27.1-111.2-113.3 139.8 55.5 26.6 7.8 98 344 A P E - H 0 82B 91 0, 0.0 2,-0.3 0, 0.0 -16,-0.2 -0.416 36.1-174.7 -64.8 148.7 58.6 24.4 7.2 99 345 A F E - H 0 81B 3 -18,-2.1 -18,-3.3 -2,-0.1 2,-0.6 -0.992 13.8-143.8-147.9 134.6 57.9 20.7 6.6 100 346 A L E -eH 11 80B 71 -90,-2.2 -88,-2.2 -2,-0.3 2,-0.4 -0.904 5.2-159.6-109.3 122.6 60.4 17.8 6.2 101 347 A Y E -eH 12 79B 0 -22,-3.0 -22,-2.5 -2,-0.6 -88,-0.2 -0.802 16.4-163.5 -91.6 138.5 60.0 14.9 3.8 102 348 A Y E -e 13 0B 79 -90,-2.2 -88,-2.1 -2,-0.4 -27,-0.1 -0.888 23.9 -93.9-124.6 152.5 62.1 11.9 4.7 103 349 A P 0 0 36 0, 0.0 -29,-0.1 0, 0.0 -27,-0.1 -0.164 360.0 360.0 -57.7 149.3 63.0 8.7 2.7 104 350 A E 0 0 199 -31,-0.5 0, 0.0 -29,-0.2 0, 0.0 -0.523 360.0 360.0 -70.7 360.0 61.0 5.5 3.0