==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 23-JUL-04 1U42 . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI . 101 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10275.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 32.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 15.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 246 A S 0 0 157 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-116.5 -7.4 46.1 26.1 2 247 A N + 0 0 108 1,-0.1 2,-0.6 26,-0.0 25,-0.1 0.018 360.0 100.9 79.1 -25.2 -5.8 48.5 23.6 3 248 A L + 0 0 108 22,-0.1 2,-0.3 23,-0.1 -1,-0.1 -0.814 49.3 159.6 -92.1 119.2 -2.3 47.6 25.0 4 249 A K - 0 0 133 -2,-0.6 2,-1.6 23,-0.1 22,-1.4 -0.986 43.6-132.1-147.4 137.3 -0.5 45.2 22.7 5 250 A I + 0 0 111 -2,-0.3 20,-0.2 1,-0.2 3,-0.1 -0.620 28.3 174.5 -84.9 86.4 3.1 44.0 21.9 6 251 A V - 0 0 80 -2,-1.6 2,-0.3 18,-0.3 19,-0.2 0.950 62.9 -6.5 -57.1 -49.7 3.2 44.3 18.2 7 252 A R E -A 24 0A 41 17,-2.3 17,-3.8 -3,-0.2 2,-0.3 -0.997 44.7-168.8-154.6 157.2 6.9 43.4 18.0 8 253 A M E -A 23 0A 67 -2,-0.3 15,-0.2 15,-0.3 3,-0.0 -0.949 17.8-150.3-143.7 117.5 10.2 42.8 19.8 9 254 A D S S+ 0 0 100 13,-2.4 2,-0.3 -2,-0.3 14,-0.1 0.407 90.0 33.9 -71.7 4.6 13.5 42.6 17.9 10 255 A R + 0 0 97 12,-0.2 -1,-0.2 1,-0.0 3,-0.0 -0.883 52.9 178.6-160.7 126.4 14.8 40.2 20.6 11 256 A T S S+ 0 0 132 -2,-0.3 2,-0.3 -3,-0.0 -2,-0.0 0.063 70.8 53.6-116.3 20.4 13.0 37.6 22.6 12 257 A A + 0 0 65 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.990 57.4 163.4-151.5 155.3 15.9 36.3 24.5 13 258 A G - 0 0 54 -2,-0.3 2,-0.2 -3,-0.0 5,-0.0 -0.989 41.3 -79.9-169.8 161.3 18.7 37.6 26.7 14 259 A C > - 0 0 72 -2,-0.3 3,-4.2 1,-0.1 5,-0.2 -0.465 42.3-119.4 -70.9 134.4 21.4 37.0 29.3 15 260 A V T 3 S+ 0 0 150 1,-0.3 -1,-0.1 -2,-0.2 0, 0.0 0.625 113.3 68.2 -48.3 -15.8 20.2 36.6 32.9 16 261 A T T 3 S- 0 0 118 1,-0.1 -1,-0.3 2,-0.0 -2,-0.0 0.673 88.0-171.1 -80.2 -17.2 22.4 39.6 33.6 17 262 A G < + 0 0 40 -3,-4.2 -1,-0.1 1,-0.1 3,-0.1 0.056 44.9 120.6 53.6-169.6 20.1 41.8 31.6 18 263 A G + 0 0 91 1,-0.3 2,-0.4 -5,-0.0 -1,-0.1 0.529 45.7 134.5 91.0 7.3 20.9 45.4 30.7 19 264 A E - 0 0 88 -5,-0.2 -1,-0.3 1,-0.0 2,-0.2 -0.740 57.4-116.1 -93.4 137.3 20.8 44.7 27.0 20 265 A E - 0 0 96 -2,-0.4 2,-0.3 -3,-0.1 -1,-0.0 -0.461 34.2-178.5 -75.6 141.1 18.9 47.1 24.7 21 266 A I - 0 0 68 -2,-0.2 2,-0.7 2,-0.0 -10,-0.0 -0.995 24.7-135.2-140.2 144.0 15.8 46.0 22.8 22 267 A M - 0 0 57 -2,-0.3 -13,-2.4 2,-0.0 2,-0.4 -0.899 26.1-173.6-102.4 114.4 13.4 47.7 20.4 23 268 A L E -A 8 0A 50 -2,-0.7 2,-0.4 -15,-0.2 -15,-0.3 -0.921 7.9-158.1-110.5 133.0 9.8 46.9 21.2 24 269 A L E +A 7 0A 95 -17,-3.8 -17,-2.3 -2,-0.4 2,-0.3 -0.888 21.9 159.7-108.9 141.3 7.0 48.0 19.0 25 270 A C - 0 0 53 -2,-0.4 -20,-0.2 -20,-0.2 3,-0.1 -0.942 37.7 -96.8-152.5 170.4 3.5 48.4 20.3 26 271 A D S S- 0 0 80 -22,-1.4 -1,-0.1 -2,-0.3 -23,-0.1 0.129 78.7 -26.9 -75.5-161.6 0.1 50.1 19.6 27 272 A K S S+ 0 0 146 -25,-0.1 2,-0.3 -24,-0.0 -1,-0.2 -0.268 75.2 151.5 -57.3 126.7 -1.0 53.4 21.1 28 273 A V - 0 0 52 -3,-0.1 2,-0.4 -25,-0.1 5,-0.1 -0.925 45.2-111.1-147.2 167.1 0.5 54.2 24.5 29 274 A Q > - 0 0 97 -2,-0.3 3,-1.1 1,-0.1 4,-0.3 -0.894 24.3-136.2-103.7 137.0 1.4 57.2 26.6 30 275 A K T 3 S+ 0 0 100 -2,-0.4 3,-0.5 1,-0.3 -1,-0.1 0.885 103.1 37.5 -60.8 -41.1 5.2 57.8 27.1 31 276 A D T 3 S+ 0 0 98 1,-0.2 -1,-0.3 21,-0.1 3,-0.0 0.256 114.5 55.5 -96.5 13.6 5.0 58.5 30.8 32 277 A D S < S+ 0 0 137 -3,-1.1 2,-0.3 2,-0.0 -1,-0.2 0.213 91.3 85.1-127.3 17.2 2.3 56.0 31.6 33 278 A I + 0 0 52 -3,-0.5 2,-0.3 -4,-0.3 -5,-0.0 -0.861 44.8 178.2-124.0 154.4 3.7 52.8 30.3 34 279 A Q - 0 0 127 -2,-0.3 2,-0.8 2,-0.0 15,-0.1 -0.985 26.2-133.1-153.0 141.8 6.1 50.1 31.6 35 280 A I - 0 0 58 -2,-0.3 13,-2.1 13,-0.3 2,-0.4 -0.858 30.5-167.3 -98.6 108.9 7.5 46.8 30.4 36 281 A R E -B 47 0B 104 -2,-0.8 2,-0.5 11,-0.2 11,-0.2 -0.827 10.8-161.7-103.5 134.2 7.1 44.2 33.1 37 282 A F E +B 46 0B 106 9,-3.6 9,-1.6 -2,-0.4 2,-0.3 -0.947 23.4 167.4-110.3 130.4 8.8 40.8 33.1 38 283 A Y E -B 45 0B 153 -2,-0.5 2,-0.3 7,-0.2 7,-0.3 -0.923 28.9-152.6-143.0 167.3 7.3 38.2 35.5 39 284 A E E B 44 0B 141 5,-2.1 5,-1.9 -2,-0.3 -2,-0.0 -0.908 360.0 360.0-145.0 110.3 7.3 34.5 36.4 40 285 A E 0 0 119 -2,-0.3 3,-0.2 3,-0.2 5,-0.0 -0.129 360.0 360.0 -66.5 360.0 4.3 32.8 38.0 41 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 290 A G 0 0 112 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -24.8 5.0 32.9 44.2 43 291 A V - 0 0 100 -3,-0.2 2,-0.3 2,-0.0 -3,-0.2 -0.720 360.0-174.2-156.9 102.3 5.6 35.8 41.9 44 292 A W E +B 39 0B 148 -5,-1.9 -5,-2.1 -2,-0.2 2,-0.3 -0.672 14.8 169.9 -94.8 152.4 8.8 37.2 40.5 45 293 A E E +B 38 0B 89 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.2 -0.947 14.6 176.0-151.7 171.1 9.1 40.4 38.4 46 294 A G E -B 37 0B 22 -9,-1.6 -9,-3.6 -2,-0.3 2,-0.3 -0.897 20.7-130.8-173.8 148.5 11.4 43.0 36.9 47 295 A F E -B 36 0B 102 -2,-0.3 -11,-0.2 -11,-0.2 2,-0.2 -0.841 19.9-108.6-119.3 154.2 11.1 46.0 34.6 48 296 A G - 0 0 29 -13,-2.1 2,-0.6 -2,-0.3 -13,-0.3 -0.480 33.3-122.6 -74.6 140.7 12.8 47.3 31.4 49 297 A D + 0 0 165 -2,-0.2 2,-0.3 -15,-0.1 -1,-0.1 -0.744 56.4 114.7 -88.8 115.3 15.0 50.4 31.7 50 298 A F - 0 0 65 -2,-0.6 5,-0.0 5,-0.0 -2,-0.0 -0.984 45.1-129.3-168.5 168.2 14.0 53.3 29.6 51 299 A S > - 0 0 54 -2,-0.3 3,-4.3 1,-0.0 4,-0.4 -0.907 35.7 -98.1-131.8 158.1 12.8 56.9 29.5 52 300 A P T 3 S+ 0 0 44 0, 0.0 3,-0.4 0, 0.0 -21,-0.1 0.606 122.3 57.4 -41.6 -25.3 10.1 59.1 27.9 53 301 A T T 3 S+ 0 0 108 1,-0.2 3,-0.0 -23,-0.1 -23,-0.0 0.560 97.3 63.0 -87.7 -9.3 12.5 60.3 25.3 54 302 A D S < S+ 0 0 92 -3,-4.3 2,-0.7 1,-0.1 -1,-0.2 0.506 92.1 76.8 -88.5 -7.2 13.1 56.6 24.3 55 303 A V + 0 0 47 -3,-0.4 2,-0.4 -4,-0.4 -1,-0.1 -0.862 58.8 158.9-112.4 101.8 9.4 56.3 23.3 56 304 A H - 0 0 129 -2,-0.7 2,-0.3 -26,-0.0 -3,-0.0 -0.939 39.1-121.5-126.4 146.9 8.4 57.9 19.9 57 305 A R + 0 0 211 -2,-0.4 2,-0.3 -30,-0.0 -30,-0.0 -0.601 48.7 149.3 -78.8 139.1 5.5 57.3 17.5 58 306 A Q - 0 0 159 -2,-0.3 2,-0.3 2,-0.0 -1,-0.0 -0.938 45.2 -90.3-157.9 178.2 6.7 56.3 14.0 59 307 A F - 0 0 210 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.774 32.2-155.5-100.9 148.6 6.0 54.4 10.8 60 308 A A - 0 0 79 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.987 7.9-172.0-128.3 127.8 7.0 50.8 10.3 61 309 A I - 0 0 128 -2,-0.4 2,-0.7 2,-0.0 -2,-0.0 -0.938 5.4-168.3-124.0 110.1 7.6 49.1 7.0 62 310 A M + 0 0 194 -2,-0.5 2,-0.3 2,-0.0 -2,-0.0 -0.875 30.6 153.6 -94.3 116.4 8.2 45.4 6.8 63 311 A F - 0 0 130 -2,-0.7 2,-0.4 0, 0.0 -2,-0.0 -0.842 42.7-113.0-136.1 172.3 9.4 44.8 3.3 64 312 A K - 0 0 196 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.935 37.2-107.7-114.7 134.7 11.6 42.2 1.5 65 313 A T - 0 0 84 -2,-0.4 2,-0.0 1,-0.1 -1,-0.0 -0.253 28.2-123.7 -63.4 142.3 15.0 43.1 0.1 66 314 A P - 0 0 92 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.317 33.7 -99.3 -76.8 165.0 15.5 43.3 -3.7 67 315 A K - 0 0 173 1,-0.1 4,-0.1 -2,-0.0 0, 0.0 -0.770 35.6-117.5 -92.9 129.7 18.2 41.3 -5.4 68 316 A Y - 0 0 48 -2,-0.5 3,-0.1 2,-0.1 -1,-0.1 -0.020 26.8-112.5 -52.4 165.4 21.5 43.0 -6.2 69 317 A K S S+ 0 0 161 1,-0.2 2,-1.1 2,-0.1 3,-0.1 0.979 105.4 53.2 -67.9 -58.5 22.5 43.2 -9.9 70 318 A D > - 0 0 78 1,-0.2 3,-0.8 2,-0.0 -1,-0.2 -0.677 61.8-179.4 -85.3 96.7 25.4 40.8 -9.8 71 319 A V T 3 S+ 0 0 67 -2,-1.1 31,-0.4 1,-0.2 2,-0.3 0.850 75.0 63.6 -62.0 -31.6 24.2 37.6 -8.3 72 320 A N T 3 + 0 0 139 -3,-0.1 -1,-0.2 29,-0.1 2,-0.2 -0.094 66.3 136.2 -92.2 37.6 27.7 36.1 -8.6 73 321 A I < - 0 0 39 -3,-0.8 29,-0.1 -2,-0.3 4,-0.1 -0.502 37.8-163.0 -80.9 150.8 30.0 38.2 -6.4 74 322 A T S S+ 0 0 139 -2,-0.2 -1,-0.1 27,-0.1 -2,-0.0 0.260 76.5 53.1-112.5 6.3 32.5 36.5 -4.1 75 323 A K S S- 0 0 52 25,-0.0 -1,-0.1 24,-0.0 24,-0.1 -0.996 97.8 -88.6-144.1 146.2 33.0 39.6 -2.1 76 324 A P - 0 0 82 0, 0.0 2,-0.6 0, 0.0 24,-0.2 -0.248 35.6-150.7 -54.5 132.9 30.6 42.0 -0.2 77 325 A A E -C 99 0C 16 22,-2.0 22,-2.5 -4,-0.1 2,-0.5 -0.946 8.3-147.9-110.2 119.5 29.3 44.8 -2.3 78 326 A S E +C 98 0C 90 -2,-0.6 2,-0.2 20,-0.2 20,-0.2 -0.763 30.6 153.7 -92.4 127.8 28.5 48.0 -0.3 79 327 A V E -C 97 0C 45 18,-2.7 18,-2.9 -2,-0.5 2,-0.3 -0.770 35.3 -93.7-138.9-175.2 25.6 50.1 -1.6 80 328 A F E -C 96 0C 144 -2,-0.2 2,-0.4 16,-0.2 -2,-0.0 -0.795 18.1-167.6-113.2 150.9 22.9 52.6 -0.6 81 329 A V E +C 95 0C 69 14,-2.7 14,-1.6 -2,-0.3 2,-0.3 -0.999 18.9 165.4-132.9 129.0 19.3 52.5 0.5 82 330 A Q - 0 0 94 -2,-0.4 2,-0.3 12,-0.2 11,-0.1 -0.891 35.4-108.8-138.1 168.4 17.1 55.6 0.7 83 331 A L - 0 0 117 -2,-0.3 9,-1.0 10,-0.2 2,-0.3 -0.733 33.1-171.8 -97.2 150.1 13.5 56.5 0.9 84 332 A R B -D 91 0D 163 -2,-0.3 2,-0.5 7,-0.2 7,-0.2 -0.966 19.5-136.8-147.7 130.2 11.7 58.0 -2.0 85 333 A R > - 0 0 149 5,-1.7 4,-1.7 -2,-0.3 5,-0.2 -0.723 12.8-146.1 -86.7 128.2 8.3 59.6 -2.4 86 334 A K T 4 S+ 0 0 202 -2,-0.5 -1,-0.1 1,-0.2 0, 0.0 0.811 91.2 55.5 -62.6 -35.3 6.5 58.5 -5.6 87 335 A S T 4 S+ 0 0 108 1,-0.2 -1,-0.2 2,-0.0 -2,-0.0 0.953 131.4 5.9 -67.9 -49.6 4.7 61.8 -6.2 88 336 A D T 4 S- 0 0 92 2,-0.1 -2,-0.2 3,-0.0 -1,-0.2 0.320 92.7-124.9-117.3 7.5 7.6 64.2 -6.3 89 337 A L < + 0 0 97 -4,-1.7 -3,-0.2 1,-0.1 -2,-0.0 0.783 49.8 164.8 53.3 32.0 10.5 61.7 -6.0 90 338 A E - 0 0 37 -5,-0.2 -5,-1.7 1,-0.1 2,-0.2 -0.268 19.4-155.8 -67.4 165.1 11.8 63.5 -3.0 91 339 A T B -D 84 0D 84 -7,-0.2 2,-0.2 -3,-0.1 -7,-0.2 -0.779 11.0-125.2-137.5-178.9 14.4 61.4 -1.1 92 340 A S - 0 0 44 -9,-1.0 3,-0.1 -2,-0.2 0, 0.0 -0.740 50.9 -72.1-121.5 171.4 15.9 60.9 2.3 93 341 A E - 0 0 169 -2,-0.2 -10,-0.2 1,-0.1 -1,-0.1 -0.485 64.3-113.7 -62.6 134.6 19.6 60.9 3.4 94 342 A P - 0 0 58 0, 0.0 -12,-0.2 0, 0.0 -1,-0.1 -0.228 29.4-150.9 -67.3 165.1 20.9 57.6 2.0 95 343 A K E -C 81 0C 152 -14,-1.6 -14,-2.7 -3,-0.1 2,-0.2 -0.979 19.4-104.7-137.5 148.1 22.0 54.8 4.3 96 344 A P E +C 80 0C 98 0, 0.0 2,-0.4 0, 0.0 -16,-0.2 -0.514 35.0 178.7 -76.4 139.3 24.6 52.1 3.8 97 345 A F E -C 79 0C 87 -18,-2.9 -18,-2.7 -2,-0.2 2,-0.5 -0.981 16.5-144.0-143.6 127.6 23.6 48.5 3.1 98 346 A L E -C 78 0C 91 -2,-0.4 2,-0.3 -20,-0.2 -20,-0.2 -0.829 7.0-161.4-103.3 123.3 25.9 45.5 2.6 99 347 A Y E -C 77 0C 42 -22,-2.5 -22,-2.0 -2,-0.5 -2,-0.0 -0.753 12.4-166.7 -94.9 140.6 25.2 42.7 0.1 100 348 A Y - 0 0 183 -2,-0.3 2,-0.1 -24,-0.2 -27,-0.1 -0.889 27.7 -99.4-126.4 157.6 27.1 39.4 0.5 101 349 A P 0 0 38 0, 0.0 -29,-0.1 0, 0.0 -27,-0.1 -0.481 360.0 360.0 -71.5 148.6 27.6 36.3 -1.7 102 350 A E 0 0 238 -31,-0.4 0, 0.0 -29,-0.1 0, 0.0 -0.289 360.0 360.0 -68.0 360.0 25.3 33.4 -0.8