==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UBIQUITIN 07-APR-99 1UD7 . COMPND 2 MOLECULE: PROTEIN (UBIQUITIN CORE MUTANT 1D7); . SOURCE 2 EXPRESSION_SYSTEM: ESCHERICHIA COLI; . AUTHOR E.C.JOHNSON,G.A.LAZAR,J.R.DESJARLAIS,T.M.HANDEL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5170.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 62 0, 0.0 16,-2.6 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 150.0 -13.3 -3.0 1.3 2 2 A Q E -A 16 0A 113 14,-0.2 62,-1.8 12,-0.0 2,-0.3 -0.802 360.0-168.9 -99.0 135.2 -10.8 -5.6 0.1 3 3 A V E -A 15 0A 1 12,-2.9 12,-2.2 -2,-0.4 2,-0.5 -0.779 19.2-122.9-118.9 163.6 -8.1 -4.7 -2.4 4 4 A F E -Ab 14 66A 55 61,-2.1 63,-2.1 -2,-0.3 2,-0.5 -0.929 20.6-159.4-111.6 125.0 -5.6 -6.8 -4.4 5 5 A L E -Ab 13 67A 1 8,-1.8 8,-1.7 -2,-0.5 2,-0.4 -0.874 5.3-152.5-105.9 132.6 -1.8 -6.1 -4.2 6 6 A K E -Ab 12 68A 56 61,-2.5 63,-2.1 -2,-0.5 6,-0.2 -0.844 9.0-156.6-105.7 139.1 0.6 -7.2 -6.9 7 7 A T - 0 0 21 4,-0.9 3,-0.4 -2,-0.4 63,-0.1 -0.409 37.8 -94.9-102.8-179.0 4.3 -8.0 -6.2 8 8 A L S S+ 0 0 112 1,-0.2 62,-0.0 -2,-0.1 -1,-0.0 0.576 126.2 51.8 -72.7 -8.7 7.4 -8.0 -8.4 9 9 A T S S- 0 0 122 2,-0.1 -1,-0.2 0, 0.0 -3,-0.0 0.648 120.8-104.8 -99.6 -21.0 6.8 -11.7 -8.9 10 10 A G + 0 0 56 -3,-0.4 2,-0.4 1,-0.3 -2,-0.1 0.738 64.9 152.8 101.1 30.1 3.1 -11.4 -10.0 11 11 A K - 0 0 120 2,-0.0 -4,-0.9 0, 0.0 2,-0.6 -0.782 35.1-143.7 -96.4 134.7 1.4 -12.6 -6.8 12 12 A T E -A 6 0A 84 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.860 19.7-175.1-101.2 122.7 -2.1 -11.4 -6.0 13 13 A V E -A 5 0A 17 -8,-1.7 -8,-1.8 -2,-0.6 2,-0.7 -0.873 21.4-135.3-117.1 149.7 -2.9 -10.8 -2.3 14 14 A T E +A 4 0A 92 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.870 31.1 172.3-108.0 103.4 -6.2 -9.9 -0.6 15 15 A I E -A 3 0A 11 -12,-2.2 -12,-2.9 -2,-0.7 2,-0.6 -0.813 29.1-126.2-110.6 150.6 -5.7 -7.1 1.9 16 16 A E E +A 2 0A 157 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.847 39.7 156.4 -99.7 123.7 -8.4 -5.2 3.8 17 17 A V - 0 0 3 -16,-2.6 3,-0.0 -2,-0.6 -2,-0.0 -0.921 27.6-140.1-140.4 165.0 -8.3 -1.4 3.7 18 18 A E > - 0 0 106 -2,-0.3 3,-2.8 1,-0.1 38,-0.4 -0.940 27.4-117.4-129.3 151.4 -10.7 1.6 4.1 19 19 A P T 3 S+ 0 0 52 0, 0.0 38,-2.0 0, 0.0 39,-0.3 0.775 117.4 58.6 -54.6 -27.6 -11.0 4.9 2.2 20 20 A S T 3 S+ 0 0 98 36,-0.1 2,-0.2 35,-0.1 0, 0.0 0.368 85.8 110.9 -84.4 5.0 -10.1 6.6 5.5 21 21 A D < - 0 0 16 -3,-2.8 35,-1.9 1,-0.0 2,-0.3 -0.572 65.6-131.0 -82.6 143.9 -6.8 4.7 5.5 22 22 A T B > -E 55 0B 54 33,-0.2 4,-2.0 -2,-0.2 3,-0.5 -0.729 19.7-117.1 -96.9 144.1 -3.6 6.6 5.0 23 23 A V H > S+ 0 0 0 31,-2.8 4,-2.4 28,-0.4 5,-0.2 0.861 115.8 59.3 -42.2 -43.9 -0.9 5.5 2.5 24 24 A E H > S+ 0 0 127 28,-0.5 4,-1.7 30,-0.4 -1,-0.2 0.954 104.2 47.6 -51.8 -56.8 1.4 5.0 5.5 25 25 A N H > S+ 0 0 92 -3,-0.5 4,-1.9 1,-0.2 -1,-0.2 0.890 108.7 57.0 -52.3 -42.1 -0.9 2.5 7.1 26 26 A F H X S+ 0 0 3 -4,-2.0 4,-1.9 1,-0.3 3,-0.4 0.943 105.0 49.1 -54.9 -51.7 -1.1 0.7 3.8 27 27 A K H X S+ 0 0 15 -4,-2.4 4,-2.0 1,-0.2 -1,-0.3 0.815 107.1 58.5 -58.6 -30.3 2.6 0.3 3.6 28 28 A A H X S+ 0 0 45 -4,-1.7 4,-1.7 -5,-0.2 -1,-0.2 0.904 103.7 50.1 -66.4 -42.0 2.5 -1.1 7.1 29 29 A K H < S+ 0 0 57 -4,-1.9 4,-0.5 -3,-0.4 -2,-0.2 0.906 110.7 49.6 -62.8 -42.6 0.1 -3.8 6.1 30 30 A I H >X>S+ 0 0 1 -4,-1.9 4,-4.4 1,-0.2 3,-1.2 0.885 106.4 56.2 -63.9 -39.8 2.4 -4.8 3.2 31 31 A Q H 3X5S+ 0 0 78 -4,-2.0 4,-1.7 1,-0.3 -1,-0.2 0.886 103.4 53.8 -59.9 -40.2 5.4 -4.9 5.5 32 32 A D H 3<5S+ 0 0 156 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.633 120.1 35.1 -69.7 -13.0 3.6 -7.4 7.8 33 33 A K H <45S+ 0 0 103 -3,-1.2 -2,-0.2 -4,-0.5 -1,-0.2 0.758 136.1 20.1-107.2 -41.0 3.1 -9.5 4.6 34 34 A E H <5S- 0 0 76 -4,-4.4 -3,-0.2 2,-0.1 -2,-0.2 0.685 91.9-134.7-101.8 -25.8 6.3 -8.9 2.7 35 35 A G << + 0 0 54 -4,-1.7 -4,-0.2 -5,-0.7 -3,-0.1 0.852 55.0 140.4 73.3 35.1 8.5 -7.6 5.6 36 36 A I - 0 0 42 -9,-0.2 -1,-0.2 -6,-0.2 -2,-0.1 -0.951 55.3-115.2-116.7 124.5 9.9 -4.7 3.6 37 37 A P > - 0 0 49 0, 0.0 3,-3.0 0, 0.0 4,-0.3 -0.202 25.3-118.3 -54.3 139.9 10.4 -1.2 5.2 38 38 A P G > S+ 0 0 46 0, 0.0 3,-1.3 0, 0.0 -10,-0.0 0.746 112.0 73.1 -51.5 -24.8 8.2 1.6 3.7 39 39 A D G 3 S+ 0 0 131 1,-0.3 -3,-0.0 3,-0.0 32,-0.0 0.739 105.3 36.5 -63.4 -22.4 11.5 3.2 2.7 40 40 A Q G < S+ 0 0 89 -3,-3.0 2,-0.4 33,-0.0 -1,-0.3 0.253 100.3 100.4-112.2 8.6 11.8 0.6 0.0 41 41 A Q < - 0 0 5 -3,-1.3 2,-0.4 -4,-0.3 30,-0.2 -0.793 46.1-177.7 -99.8 138.8 8.0 0.4 -0.7 42 42 A R E -C 70 0A 75 28,-1.4 28,-1.6 -2,-0.4 2,-0.6 -0.913 6.6-166.2-140.2 110.5 6.5 2.2 -3.7 43 43 A L E -C 69 0A 0 7,-0.4 7,-1.4 -2,-0.4 2,-0.6 -0.854 5.7-172.0-100.2 122.0 2.8 2.1 -4.5 44 44 A I E -CD 68 49A 43 24,-1.9 24,-1.0 -2,-0.6 2,-0.5 -0.941 3.9-179.4-118.2 113.7 1.7 3.3 -7.9 45 45 A F E > S- D 0 48A 44 3,-2.7 3,-1.6 -2,-0.6 22,-0.1 -0.948 72.1 -17.8-115.6 125.1 -2.0 3.7 -8.6 46 46 A A T 3 S- 0 0 87 -2,-0.5 2,-0.3 1,-0.3 -1,-0.2 0.874 126.4 -55.9 50.6 41.7 -3.3 4.9 -12.1 47 47 A G T 3 S+ 0 0 70 1,-0.3 -1,-0.3 -3,-0.1 2,-0.1 -0.062 119.0 110.6 85.0 -35.9 0.2 6.1 -12.9 48 48 A K E < S-D 45 0A 138 -3,-1.6 -3,-2.7 -2,-0.3 2,-0.8 -0.455 70.0-127.8 -74.3 144.7 0.2 8.3 -9.8 49 49 A Q E -D 44 0A 89 -5,-0.3 -5,-0.2 -2,-0.1 -1,-0.1 -0.826 24.7-126.5 -98.2 105.4 2.6 7.4 -6.9 50 50 A L - 0 0 2 -7,-1.4 -7,-0.4 -2,-0.8 2,-0.3 -0.190 26.1-140.9 -49.6 132.3 0.6 7.2 -3.7 51 51 A E > - 0 0 105 4,-0.1 3,-1.4 1,-0.1 -28,-0.4 -0.696 16.9-123.1-100.0 152.7 2.3 9.4 -1.0 52 52 A D T 3 S+ 0 0 65 -2,-0.3 -28,-0.5 1,-0.3 -27,-0.1 0.481 112.8 56.7 -70.6 -0.8 2.7 8.7 2.7 53 53 A G T 3 S+ 0 0 76 -30,-0.1 -1,-0.3 -29,-0.1 2,-0.2 0.537 100.7 65.1-106.0 -10.6 0.8 11.9 3.4 54 54 A R S < S- 0 0 91 -3,-1.4 -31,-2.8 1,-0.0 -30,-0.4 -0.486 70.7-134.9-105.3 177.4 -2.3 11.1 1.4 55 55 A T B > -E 22 0B 22 -33,-0.3 4,-0.6 -2,-0.2 -33,-0.2 -0.675 29.0-100.4-124.7 179.6 -5.1 8.5 1.7 56 56 A L T >4>S+ 0 0 2 -35,-1.9 5,-1.7 -38,-0.4 3,-1.2 0.921 121.6 52.9 -67.9 -45.2 -7.0 6.0 -0.4 57 57 A S G >45S+ 0 0 62 -38,-2.0 3,-1.7 -36,-0.3 -1,-0.2 0.770 97.3 69.7 -61.5 -25.3 -10.1 8.3 -0.7 58 58 A D G 345S+ 0 0 84 1,-0.3 -1,-0.3 -39,-0.3 -2,-0.2 0.850 104.5 39.9 -61.3 -35.0 -7.7 11.0 -1.8 59 59 A Y G <<5S- 0 0 23 -3,-1.2 -1,-0.3 -4,-0.6 -2,-0.2 0.076 119.6-110.0-101.3 22.1 -7.2 9.1 -5.1 60 60 A N T < 5 - 0 0 130 -3,-1.7 2,-0.3 1,-0.2 -3,-0.2 0.917 54.5-179.5 49.8 49.8 -10.9 8.2 -5.3 61 61 A I < - 0 0 3 -5,-1.7 -1,-0.2 -42,-0.1 2,-0.2 -0.630 4.4-174.8 -84.3 137.8 -10.0 4.6 -4.6 62 62 A Q > - 0 0 105 -2,-0.3 3,-0.8 1,-0.2 2,-0.0 -0.535 32.7 -67.5-119.2-173.6 -12.8 2.0 -4.4 63 63 A K T 3 S+ 0 0 130 1,-0.2 -1,-0.2 -2,-0.2 -60,-0.2 -0.315 114.0 30.4 -74.8 160.3 -13.3 -1.7 -3.6 64 64 A E T 3 S+ 0 0 137 -62,-1.8 -1,-0.2 1,-0.2 2,-0.2 0.627 88.8 150.3 66.4 11.6 -11.8 -4.4 -5.8 65 65 A S < - 0 0 20 -3,-0.8 -61,-2.1 -63,-0.2 2,-0.4 -0.505 35.9-146.1 -77.8 144.6 -9.1 -1.9 -6.6 66 66 A T E -b 4 0A 50 -63,-0.2 2,-0.3 -2,-0.2 -61,-0.2 -0.911 12.5-169.2-115.6 140.5 -5.6 -3.3 -7.4 67 67 A I E -b 5 0A 2 -63,-2.1 -61,-2.5 -2,-0.4 2,-0.5 -0.957 15.6-134.8-129.0 146.7 -2.3 -1.6 -6.6 68 68 A H E -bC 6 44A 104 -24,-1.0 -24,-1.9 -2,-0.3 2,-0.4 -0.858 16.2-151.7-103.7 132.1 1.3 -2.3 -7.7 69 69 A L E - C 0 43A 10 -63,-2.1 2,-0.3 -2,-0.5 -26,-0.2 -0.821 13.5-173.2-104.0 140.6 4.2 -2.4 -5.2 70 70 A V E - C 0 42A 36 -28,-1.6 -28,-1.4 -2,-0.4 -63,-0.0 -0.904 28.5-141.9-130.5 158.9 7.8 -1.6 -6.1 71 71 A L - 0 0 64 -2,-0.3 -1,-0.1 -30,-0.2 -2,-0.0 0.806 40.5-134.2 -87.0 -33.8 11.2 -1.7 -4.3 72 72 A R + 0 0 157 -30,-0.1 -2,-0.0 1,-0.1 -31,-0.0 0.930 45.1 152.6 76.1 91.2 12.5 1.5 -5.9 73 73 A L S S- 0 0 112 2,-0.0 -1,-0.1 -33,-0.0 -33,-0.0 -0.199 73.2 -86.9-143.6 45.4 16.1 1.1 -7.1 74 74 A R S S+ 0 0 247 1,-0.2 2,-0.3 2,-0.0 0, 0.0 0.909 78.6 158.7 49.0 48.7 16.5 3.6 -9.9 75 75 A G 0 0 49 1,-0.1 -1,-0.2 0, 0.0 -2,-0.0 -0.725 360.0 360.0-104.2 154.2 15.1 1.1 -12.4 76 76 A G 0 0 158 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 -0.628 360.0 360.0 124.1 360.0 13.5 1.7 -15.8