==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 17-JUL-03 1UIL . COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-BINDING MOTIF; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,F.HAYASHI,H.HAMANA,M.SHIROUZU,T.TERADA, . 113 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8362.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 11.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 28.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 2,-3.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -85.6 -33.4 -8.7 -18.6 2 2 A S - 0 0 135 2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.319 360.0-162.4 74.7 -58.4 -32.9 -11.9 -16.6 3 3 A S - 0 0 117 -2,-3.0 2,-0.3 1,-0.1 0, 0.0 0.262 7.0-159.0 61.9 164.2 -29.2 -11.6 -17.1 4 4 A G - 0 0 71 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.969 11.5-165.7-165.9 172.5 -26.8 -14.5 -16.5 5 5 A S - 0 0 125 -2,-0.3 2,-0.3 3,-0.0 3,-0.1 -0.976 1.7-164.3-163.5 163.0 -23.2 -15.6 -15.9 6 6 A S + 0 0 108 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.970 51.6 68.7-151.6 161.7 -20.9 -18.6 -15.9 7 7 A G + 0 0 80 -2,-0.3 2,-0.5 1,-0.2 -1,-0.2 0.932 51.5 168.3 89.1 69.9 -17.5 -19.6 -14.6 8 8 A L - 0 0 136 -3,-0.1 2,-0.8 2,-0.0 -1,-0.2 -0.970 20.2-164.7-119.2 124.1 -17.8 -20.0 -10.8 9 9 A E + 0 0 157 -2,-0.5 3,-0.2 1,-0.1 0, 0.0 -0.795 19.4 163.2-109.8 87.8 -15.1 -21.7 -8.8 10 10 A S + 0 0 110 -2,-0.8 -1,-0.1 1,-0.2 -2,-0.0 0.063 60.3 86.0 -89.8 23.8 -16.6 -22.4 -5.4 11 11 A E + 0 0 178 1,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.411 58.9 104.0-120.7 53.7 -13.7 -24.8 -4.8 12 12 A E + 0 0 76 -3,-0.2 2,-0.3 2,-0.0 99,-0.1 -0.814 37.8 147.4-139.3 95.3 -11.1 -22.5 -3.5 13 13 A V - 0 0 126 -2,-0.3 2,-0.2 97,-0.1 -2,-0.0 -0.951 22.5-163.3-129.9 149.2 -10.5 -22.6 0.3 14 14 A D - 0 0 47 -2,-0.3 -2,-0.0 1,-0.2 93,-0.0 -0.646 12.2-153.7-121.5 178.7 -7.4 -22.0 2.4 15 15 A L S S- 0 0 153 -2,-0.2 -1,-0.2 0, 0.0 4,-0.1 0.671 88.3 -3.8-116.1 -75.8 -6.3 -22.8 5.9 16 16 A N S >> S+ 0 0 93 2,-0.2 3,-3.1 1,-0.1 4,-3.1 0.806 124.5 69.2 -91.4 -37.1 -3.6 -20.4 7.2 17 17 A A H 3> S+ 0 0 18 1,-0.3 4,-1.8 2,-0.2 5,-0.3 0.769 94.9 60.7 -51.8 -26.0 -3.2 -18.5 4.0 18 18 A G H 34 S+ 0 0 26 2,-0.2 -1,-0.3 1,-0.2 87,-0.3 0.720 111.9 36.7 -73.9 -22.5 -6.7 -17.2 4.8 19 19 A L H <4 S+ 0 0 117 -3,-3.1 -2,-0.2 -4,-0.1 -1,-0.2 0.831 113.8 55.1 -94.9 -43.4 -5.3 -15.7 8.0 20 20 A H H < S- 0 0 128 -4,-3.1 -2,-0.2 85,-0.0 -3,-0.2 0.971 99.4-139.1 -53.0 -62.9 -2.0 -14.6 6.7 21 21 A G < - 0 0 22 -4,-1.8 2,-1.9 85,-0.2 -3,-0.1 0.623 8.7-128.4 98.7 108.7 -3.4 -12.5 3.9 22 22 A N + 0 0 61 84,-0.6 2,-0.7 -5,-0.3 86,-0.3 -0.538 54.9 143.9 -85.6 71.5 -2.0 -12.4 0.4 23 23 A W - 0 0 41 -2,-1.9 2,-0.3 -3,-0.1 72,-0.1 -0.874 25.8-176.2-115.7 96.0 -1.8 -8.7 0.2 24 24 A T > - 0 0 62 -2,-0.7 4,-2.1 1,-0.1 5,-0.4 -0.700 43.6-107.6 -94.3 144.7 1.3 -7.6 -1.7 25 25 A L H > S+ 0 0 69 -2,-0.3 4,-1.8 1,-0.3 66,-0.3 0.805 126.6 48.1 -33.8 -39.8 2.3 -4.0 -2.2 26 26 A E H > S+ 0 0 146 2,-0.2 4,-2.3 3,-0.1 -1,-0.3 0.973 114.0 42.7 -68.0 -57.4 1.2 -4.7 -5.7 27 27 A N H > S+ 0 0 29 1,-0.2 4,-3.5 2,-0.2 5,-0.3 0.971 113.0 52.1 -52.1 -63.6 -2.1 -6.3 -4.9 28 28 A A H X S+ 0 0 0 -4,-2.1 4,-3.6 2,-0.2 -1,-0.2 0.885 110.5 51.4 -38.3 -54.6 -3.0 -3.8 -2.2 29 29 A K H X S+ 0 0 50 -4,-1.8 4,-1.9 -5,-0.4 3,-0.3 0.964 116.2 36.7 -47.3 -74.4 -2.3 -1.1 -4.7 30 30 A A H X S+ 0 0 53 -4,-2.3 4,-3.2 1,-0.3 3,-0.2 0.930 115.5 55.9 -43.5 -61.1 -4.5 -2.4 -7.4 31 31 A R H X S+ 0 0 64 -4,-3.5 4,-3.4 1,-0.3 5,-0.3 0.876 105.0 53.4 -38.0 -54.1 -7.1 -3.6 -4.9 32 32 A L H X S+ 0 0 1 -4,-3.6 4,-1.7 -5,-0.3 -1,-0.3 0.939 111.9 43.3 -47.8 -57.1 -7.2 -0.1 -3.6 33 33 A N H X S+ 0 0 70 -4,-1.9 4,-1.2 -3,-0.2 -1,-0.3 0.852 113.0 55.0 -57.8 -36.0 -8.0 1.3 -7.0 34 34 A Q H X S+ 0 0 88 -4,-3.2 4,-3.3 -5,-0.3 3,-0.4 0.909 104.2 52.4 -63.6 -44.3 -10.4 -1.7 -7.4 35 35 A Y H X S+ 0 0 13 -4,-3.4 4,-1.7 1,-0.3 6,-0.5 0.828 111.7 47.1 -60.8 -33.5 -12.2 -0.7 -4.3 36 36 A F H < S+ 0 0 11 -4,-1.7 -1,-0.3 -5,-0.3 -2,-0.2 0.690 114.1 48.5 -80.6 -20.8 -12.6 2.8 -5.7 37 37 A Q H < S+ 0 0 145 -4,-1.2 -2,-0.2 -3,-0.4 -3,-0.2 0.888 113.9 43.4 -84.0 -45.3 -13.7 1.4 -9.0 38 38 A K H < S+ 0 0 120 -4,-3.3 -2,-0.2 1,-0.2 -3,-0.2 0.967 124.5 35.2 -63.9 -55.2 -16.3 -1.0 -7.7 39 39 A E S < S- 0 0 103 -4,-1.7 -1,-0.2 -5,-0.3 -2,-0.2 0.693 107.7-129.2 -71.6 -19.5 -17.7 1.4 -5.2 40 40 A K + 0 0 174 -6,-0.3 -3,-0.2 1,-0.2 -4,-0.2 0.654 56.0 153.6 77.3 16.8 -17.1 4.1 -7.8 41 41 A I - 0 0 57 -6,-0.5 2,-0.4 -8,-0.1 -1,-0.2 -0.228 39.6-130.3 -72.8 166.6 -15.3 6.1 -5.1 42 42 A Q + 0 0 182 -3,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.988 36.4 149.2-126.9 126.6 -12.6 8.6 -5.8 43 43 A G + 0 0 27 -2,-0.4 2,-0.2 21,-0.1 -7,-0.1 -0.940 13.4 179.2-158.4 132.6 -9.2 8.7 -4.1 44 44 A E - 0 0 144 -2,-0.3 2,-0.4 19,-0.2 19,-0.3 -0.550 29.0-100.4-121.3-173.5 -5.7 9.8 -5.1 45 45 A Y - 0 0 21 -2,-0.2 2,-0.8 17,-0.1 17,-0.2 -0.896 18.0-139.7-116.6 145.0 -2.3 10.0 -3.6 46 46 A K E -A 61 0A 122 15,-3.7 15,-3.2 -2,-0.4 2,-0.6 -0.881 18.3-163.0-106.4 103.7 -0.5 13.0 -2.2 47 47 A Y E -A 60 0A 73 -2,-0.8 2,-0.6 13,-0.3 13,-0.3 -0.780 3.8-168.7 -90.8 118.7 3.2 13.0 -3.2 48 48 A T E -A 59 0A 61 11,-2.2 11,-4.3 -2,-0.6 2,-0.4 -0.925 13.3-144.0-112.2 111.1 5.3 15.3 -1.1 49 49 A Q E +A 58 0A 88 -2,-0.6 2,-0.3 9,-0.3 9,-0.3 -0.587 29.5 169.2 -75.5 126.4 8.9 15.8 -2.4 50 50 A V E +A 57 0A 56 7,-2.7 7,-1.8 -2,-0.4 5,-0.0 -0.792 33.0 31.3-130.9 172.8 11.4 16.1 0.4 51 51 A G S S- 0 0 54 -2,-0.3 5,-0.2 5,-0.2 6,-0.1 0.039 97.4 -42.1 67.7 178.0 15.1 16.2 0.8 52 52 A P - 0 0 69 0, 0.0 3,-0.3 0, 0.0 -2,-0.1 -0.287 53.7-112.6 -75.0 162.8 17.6 17.5 -1.7 53 53 A D S > S+ 0 0 117 1,-0.2 3,-0.8 2,-0.1 -3,-0.1 0.960 117.7 58.9 -58.3 -54.8 17.3 16.9 -5.4 54 54 A H T 3 S+ 0 0 167 1,-0.3 -1,-0.2 -3,-0.0 2,-0.2 0.822 130.6 12.6 -43.1 -36.4 20.5 14.8 -5.5 55 55 A N T 3 S+ 0 0 103 -3,-0.3 -1,-0.3 2,-0.0 2,-0.3 -0.687 90.4 148.8-147.8 87.0 18.6 12.7 -3.0 56 56 A R < - 0 0 116 -3,-0.8 2,-0.3 -2,-0.2 -5,-0.2 -0.739 26.6-153.8-117.6 166.4 14.9 13.4 -2.7 57 57 A S E -A 50 0A 36 -7,-1.8 -7,-2.7 -2,-0.3 2,-0.9 -0.998 14.8-134.7-144.3 138.9 11.8 11.4 -1.8 58 58 A F E -A 49 0A 50 22,-0.7 2,-0.9 21,-0.4 21,-0.3 -0.807 20.2-145.5 -97.4 99.2 8.1 11.8 -2.7 59 59 A I E -A 48 0A 18 -11,-4.3 -11,-2.2 -2,-0.9 2,-0.8 -0.507 14.7-156.9 -66.3 103.0 6.1 11.2 0.4 60 60 A A E +A 47 0A 0 -2,-0.9 17,-2.0 -13,-0.3 2,-0.4 -0.766 17.6 177.4 -88.4 109.2 3.0 9.6 -1.0 61 61 A E E +AB 46 76A 59 -15,-3.2 -15,-3.7 -2,-0.8 2,-0.3 -0.921 5.3 178.6-116.4 139.9 0.2 10.1 1.5 62 62 A M E - B 0 75A 4 13,-1.0 13,-2.2 -2,-0.4 2,-0.4 -0.998 8.4-167.1-141.8 143.2 -3.4 9.0 1.0 63 63 A T E + B 0 74A 60 -2,-0.3 2,-0.3 -19,-0.3 11,-0.2 -0.996 7.6 177.8-133.9 136.3 -6.6 9.2 3.2 64 64 A I E - B 0 73A 13 9,-2.8 9,-2.6 -2,-0.4 2,-0.4 -0.971 16.9-142.5-136.9 150.5 -9.9 7.4 2.8 65 65 A Y E - B 0 72A 122 -2,-0.3 2,-0.6 7,-0.3 7,-0.3 -0.941 6.3-151.8-118.0 136.4 -13.1 7.3 4.8 66 66 A I E >> - B 0 71A 2 5,-3.5 4,-2.3 -2,-0.4 5,-1.1 -0.931 10.4-175.9-110.1 118.3 -15.3 4.3 5.3 67 67 A K T 45S+ 0 0 147 -2,-0.6 -1,-0.2 2,-0.2 5,-0.0 0.856 86.4 62.6 -77.0 -37.8 -19.0 5.0 5.9 68 68 A Q T 45S+ 0 0 119 1,-0.2 -1,-0.2 2,-0.1 -2,-0.0 0.655 117.9 31.6 -61.1 -14.9 -19.8 1.4 6.6 69 69 A L T 45S- 0 0 59 -3,-0.3 -2,-0.2 2,-0.3 -1,-0.2 0.689 103.0-130.6-110.2 -34.8 -17.4 1.8 9.5 70 70 A G T <5S+ 0 0 51 -4,-2.3 2,-0.2 1,-0.4 -3,-0.2 0.508 78.1 79.0 92.2 8.0 -18.1 5.5 10.3 71 71 A R E < -B 66 0A 123 -5,-1.1 -5,-3.5 2,-0.0 -1,-0.4 -0.746 67.8-130.6-134.8-178.7 -14.4 6.3 10.4 72 72 A R E -B 65 0A 143 -7,-0.3 2,-0.4 -2,-0.2 -7,-0.3 -0.969 8.2-142.8-139.2 153.1 -11.5 6.9 8.1 73 73 A I E -B 64 0A 5 -9,-2.6 -9,-2.8 -2,-0.3 2,-0.3 -0.953 14.5-161.5-120.1 137.0 -8.0 5.7 7.7 74 74 A F E -B 63 0A 101 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.831 4.7-169.9-116.8 155.0 -5.0 7.8 6.7 75 75 A A E +B 62 0A 2 -13,-2.2 -13,-1.0 -2,-0.3 2,-0.1 -0.963 11.3 174.4-141.4 156.2 -1.6 6.8 5.3 76 76 A R E +B 61 0A 117 -2,-0.3 -15,-0.3 -15,-0.3 2,-0.1 -0.581 14.7 162.0-167.1 95.5 1.7 8.6 4.6 77 77 A E - 0 0 71 -17,-2.0 -17,-0.1 8,-0.2 8,-0.1 -0.389 35.3-133.5-106.5-174.7 4.8 6.7 3.5 78 78 A H + 0 0 113 -19,-0.2 -19,-0.2 -2,-0.1 7,-0.1 -0.431 37.2 167.3-141.5 60.8 8.1 7.8 1.8 79 79 A G - 0 0 14 -21,-0.3 -21,-0.4 -19,-0.1 3,-0.1 0.154 43.2-108.9 -62.9-172.9 8.7 5.4 -1.0 80 80 A S S S+ 0 0 87 1,-0.2 -22,-0.7 -23,-0.1 2,-0.2 0.952 93.2 17.6 -84.7 -68.4 11.2 5.9 -3.7 81 81 A N S > S- 0 0 105 -24,-0.1 4,-1.9 1,-0.1 5,-0.4 -0.639 90.0 -98.0-104.2 163.4 9.2 6.7 -6.8 82 82 A K H > S+ 0 0 108 -2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.851 127.4 52.3 -44.9 -39.7 5.6 7.8 -7.1 83 83 A K H > S+ 0 0 129 2,-0.2 4,-3.7 3,-0.2 -1,-0.2 0.990 113.4 39.9 -60.8 -64.3 4.9 4.1 -7.8 84 84 A L H > S+ 0 0 65 2,-0.2 4,-2.2 1,-0.2 5,-0.3 0.964 117.7 46.6 -47.5 -73.5 6.7 2.8 -4.8 85 85 A A H X S+ 0 0 0 -4,-1.9 4,-3.0 1,-0.2 -1,-0.2 0.865 115.6 49.2 -35.0 -54.5 5.5 5.5 -2.4 86 86 A A H X S+ 0 0 0 -4,-2.4 4,-3.2 -5,-0.4 -1,-0.2 0.965 109.5 50.5 -51.2 -62.2 2.0 5.0 -3.8 87 87 A Q H X S+ 0 0 17 -4,-3.7 4,-2.6 1,-0.3 5,-0.4 0.915 112.0 46.4 -40.0 -65.2 2.2 1.3 -3.4 88 88 A S H X S+ 0 0 27 -4,-2.2 4,-2.2 1,-0.2 -1,-0.3 0.899 112.6 51.9 -45.3 -50.0 3.3 1.5 0.2 89 89 A C H X S+ 0 0 0 -4,-3.0 4,-1.9 -5,-0.3 3,-0.3 0.961 112.3 45.3 -51.7 -58.9 0.6 4.1 0.8 90 90 A A H >X S+ 0 0 0 -4,-3.2 4,-3.1 1,-0.3 3,-1.1 0.963 111.6 49.4 -47.8 -69.7 -2.1 1.8 -0.7 91 91 A L H 3X S+ 0 0 10 -4,-2.6 4,-3.5 -66,-0.3 -1,-0.3 0.800 107.7 61.0 -40.3 -33.7 -1.0 -1.3 1.1 92 92 A S H 3X S+ 0 0 34 -4,-2.2 4,-1.8 -5,-0.4 -1,-0.3 0.954 110.3 36.0 -60.1 -53.5 -1.1 1.1 4.1 93 93 A L H X S+ 0 0 60 -4,-1.8 4,-3.4 -5,-0.2 3,-0.6 0.943 109.6 52.8 -61.3 -50.8 -5.9 -0.9 7.8 97 97 A L H 3X>S+ 0 0 4 -4,-3.6 4,-3.3 1,-0.3 5,-1.9 0.929 110.7 47.1 -49.8 -52.4 -9.0 -1.8 5.8 98 98 A Y H 3<5S+ 0 0 97 -4,-3.1 -1,-0.3 3,-0.2 -2,-0.2 0.765 113.6 51.6 -61.2 -26.2 -8.5 -5.4 6.4 99 99 A H H <<5S+ 0 0 139 -4,-1.3 -2,-0.2 -3,-0.6 -1,-0.2 0.961 112.9 40.7 -74.5 -55.7 -7.9 -4.5 10.1 100 100 A L H <5S- 0 0 60 -4,-3.4 -2,-0.2 -5,-0.1 -3,-0.2 0.923 124.0-102.2 -58.1 -46.9 -11.0 -2.5 10.6 101 101 A G T <5S+ 0 0 42 -4,-3.3 -3,-0.2 -5,-0.3 -4,-0.1 0.680 86.6 112.1 120.7 57.6 -13.0 -5.1 8.6 102 102 A V S