==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUL-03 1UJ8 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFHJ; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR Y.SHIMOMURA,Y.TAKAHASHI,K.FUKUYAMA . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4905.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 38.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A S 0 0 64 0, 0.0 2,-0.2 0, 0.0 14,-0.1 0.000 360.0 360.0 360.0 106.4 25.0 21.6 -14.7 2 5 A H - 0 0 155 1,-0.1 15,-0.5 15,-0.0 16,-0.3 -0.657 360.0 -72.7-115.9 172.2 24.4 20.2 -18.1 3 6 A H - 0 0 105 -2,-0.2 2,-0.1 14,-0.1 -1,-0.1 -0.387 42.4-146.5 -69.5 140.0 25.7 17.1 -19.9 4 7 A H - 0 0 78 -2,-0.1 -1,-0.1 11,-0.0 11,-0.0 -0.395 13.1-128.2 -93.9 176.3 29.3 16.9 -21.1 5 8 A H + 0 0 174 -2,-0.1 2,-0.1 0, 0.0 -2,-0.0 -0.278 43.3 157.4-124.6 47.7 30.4 15.1 -24.3 6 9 A H - 0 0 99 1,-0.1 5,-0.0 2,-0.1 -2,-0.0 -0.375 38.0-146.6 -69.5 150.9 33.2 12.9 -23.0 7 10 A H S S+ 0 0 203 -2,-0.1 -1,-0.1 3,-0.0 2,-0.1 0.729 80.6 68.4 -88.6 -25.5 34.1 9.9 -25.2 8 11 A G S S- 0 0 54 2,-0.1 -2,-0.1 1,-0.1 0, 0.0 -0.422 82.5-128.2 -90.5 167.8 35.0 7.8 -22.1 9 12 A S S S+ 0 0 85 -2,-0.1 2,-0.2 2,-0.1 -1,-0.1 0.541 74.3 112.7 -90.2 -9.2 32.7 6.5 -19.4 10 13 A G - 0 0 23 40,-0.1 2,-0.3 41,-0.1 40,-0.2 -0.432 56.2-148.6 -69.6 135.2 34.9 8.0 -16.7 11 14 A L B -a 50 0A 15 38,-3.5 40,-2.9 -2,-0.2 2,-0.3 -0.825 5.3-155.6-107.9 144.4 33.5 10.9 -14.7 12 15 A K > - 0 0 84 -2,-0.3 3,-2.4 38,-0.2 7,-0.2 -0.757 36.0-103.9-111.2 160.0 35.4 13.8 -13.1 13 16 A W T 3 S+ 0 0 3 1,-0.3 52,-0.1 -2,-0.3 6,-0.1 0.794 120.8 58.9 -52.5 -30.5 34.3 15.9 -10.1 14 17 A T T 3 S+ 0 0 97 1,-0.2 2,-2.1 2,-0.1 -1,-0.3 0.584 78.1 91.1 -77.9 -10.4 33.3 18.7 -12.5 15 18 A D <> + 0 0 2 -3,-2.4 4,-2.3 1,-0.2 5,-0.3 -0.452 52.6 162.8 -83.5 66.0 30.8 16.4 -14.4 16 19 A S H > + 0 0 17 -2,-2.1 4,-2.6 1,-0.2 5,-0.2 0.886 67.1 48.0 -52.9 -50.8 28.0 17.6 -12.1 17 20 A R H > S+ 0 0 33 -15,-0.5 4,-2.6 -3,-0.2 -1,-0.2 0.945 113.4 47.0 -59.2 -50.8 25.1 16.5 -14.2 18 21 A E H > S+ 0 0 30 -16,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.880 114.9 45.5 -60.1 -42.6 26.5 13.0 -14.9 19 22 A I H X S+ 0 0 1 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.936 113.5 49.4 -68.9 -44.2 27.3 12.3 -11.3 20 23 A G H X S+ 0 0 0 -4,-2.6 4,-2.1 -5,-0.3 -2,-0.2 0.898 112.0 48.5 -60.2 -42.1 24.0 13.6 -10.0 21 24 A E H X S+ 0 0 56 -4,-2.6 4,-2.5 -5,-0.2 -1,-0.2 0.888 110.3 52.6 -64.6 -39.4 22.1 11.5 -12.6 22 25 A A H X S+ 0 0 30 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.903 109.2 48.2 -62.4 -44.9 24.2 8.5 -11.6 23 26 A L H X S+ 0 0 0 -4,-2.4 4,-2.6 1,-0.2 -1,-0.2 0.908 113.2 48.3 -63.6 -41.2 23.4 8.9 -7.9 24 27 A Y H < S+ 0 0 83 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.895 112.2 48.5 -66.1 -40.4 19.7 9.3 -8.7 25 28 A D H < S+ 0 0 139 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.886 117.1 42.3 -67.7 -37.5 19.7 6.2 -10.9 26 29 A A H < S+ 0 0 51 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.838 126.4 30.4 -77.6 -35.7 21.5 4.2 -8.2 27 30 A Y S >< S+ 0 0 83 -4,-2.6 3,-1.2 -5,-0.2 -1,-0.2 -0.590 73.1 171.1-127.2 69.0 19.5 5.4 -5.2 28 31 A P T 3 S+ 0 0 76 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.679 74.7 33.7 -51.7 -33.0 16.0 6.2 -6.7 29 32 A D T 3 S+ 0 0 161 2,-0.1 2,-0.5 3,-0.0 -5,-0.1 0.316 85.5 110.8-114.5 11.2 14.1 6.8 -3.5 30 33 A L S < S- 0 0 66 -3,-1.2 -3,-0.1 -6,-0.1 5,-0.1 -0.749 72.5-123.3 -85.5 124.3 16.7 8.4 -1.2 31 34 A D > - 0 0 62 -2,-0.5 3,-1.9 1,-0.2 4,-0.4 -0.576 14.9-153.2 -73.0 110.5 15.8 12.1 -0.7 32 35 A P G > S+ 0 0 2 0, 0.0 3,-1.7 0, 0.0 -1,-0.2 0.810 90.0 67.9 -51.4 -35.8 18.9 14.1 -1.8 33 36 A K G 3 S+ 0 0 131 1,-0.3 -2,-0.1 36,-0.1 33,-0.0 0.775 98.9 50.5 -58.6 -28.0 18.0 16.9 0.6 34 37 A T G < S+ 0 0 97 -3,-1.9 2,-0.3 2,-0.1 -1,-0.3 0.511 87.3 110.8 -88.5 -5.4 18.8 14.7 3.6 35 38 A V < - 0 0 15 -3,-1.7 2,-0.3 -4,-0.4 31,-0.0 -0.526 59.9-140.9 -78.7 133.5 22.2 13.6 2.3 36 39 A R >> - 0 0 158 -2,-0.3 4,-2.8 1,-0.1 3,-0.5 -0.690 16.6-126.7 -90.4 143.7 25.4 14.8 4.0 37 40 A F H 3> S+ 0 0 49 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.862 108.5 61.1 -55.0 -39.6 28.5 15.7 2.0 38 41 A T H 3> S+ 0 0 99 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.908 112.9 36.3 -57.0 -42.5 30.6 13.3 4.0 39 42 A D H <> S+ 0 0 51 -3,-0.5 4,-2.4 2,-0.2 3,-0.3 0.933 115.4 52.7 -75.7 -48.9 28.5 10.4 2.9 40 43 A M H X S+ 0 0 0 -4,-2.8 4,-2.7 1,-0.2 5,-0.2 0.892 104.5 58.0 -55.3 -40.9 27.8 11.6 -0.7 41 44 A H H X S+ 0 0 32 -4,-2.8 4,-2.1 -5,-0.2 -1,-0.2 0.923 109.1 45.0 -54.3 -46.2 31.5 12.0 -1.2 42 45 A Q H X S+ 0 0 104 -4,-1.0 4,-1.2 -3,-0.3 -1,-0.2 0.895 111.5 51.8 -66.4 -41.3 32.1 8.4 -0.4 43 46 A W H < S+ 0 0 67 -4,-2.4 4,-0.4 1,-0.2 3,-0.3 0.899 110.8 48.5 -63.2 -40.0 29.2 7.2 -2.6 44 47 A I H >< S+ 0 0 0 -4,-2.7 3,-1.4 1,-0.2 -1,-0.2 0.913 107.8 53.9 -66.2 -42.7 30.5 9.2 -5.5 45 48 A C H 3< S+ 0 0 26 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.755 108.5 51.6 -63.9 -22.7 34.0 7.8 -5.1 46 49 A D T 3< S+ 0 0 130 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.498 81.3 117.7 -91.7 -6.0 32.6 4.3 -5.2 47 50 A L S X S- 0 0 27 -3,-1.4 3,-1.2 -4,-0.4 -3,-0.0 -0.376 72.7-126.4 -62.0 139.2 30.7 4.8 -8.4 48 51 A E T 3 S+ 0 0 187 1,-0.3 -1,-0.1 -38,-0.0 -4,-0.0 0.896 109.9 44.7 -53.0 -43.8 31.8 2.5 -11.2 49 52 A D T 3 S+ 0 0 65 -39,-0.1 -38,-3.5 -30,-0.0 -1,-0.3 0.524 80.6 121.2 -81.5 -6.5 32.4 5.5 -13.5 50 53 A F B < +a 11 0A 27 -3,-1.2 -38,-0.2 -40,-0.2 -40,-0.1 -0.420 29.4 166.3 -60.3 124.5 34.1 7.7 -11.0 51 54 A D + 0 0 97 -40,-2.9 2,-0.2 -2,-0.2 -1,-0.1 -0.236 38.6 88.8-136.9 46.8 37.5 8.5 -12.4 52 55 A D S S- 0 0 38 -40,-0.1 -40,-0.1 -7,-0.1 -41,-0.0 -0.701 83.0 -81.7-130.7-176.2 38.9 11.3 -10.4 53 56 A D > - 0 0 109 -2,-0.2 3,-1.9 1,-0.1 4,-0.1 -0.819 28.6-142.5 -94.0 123.8 41.0 11.8 -7.2 54 57 A P G > S+ 0 0 66 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 0.833 101.5 59.2 -51.5 -35.6 38.9 11.6 -4.0 55 58 A Q G 3 S+ 0 0 168 1,-0.2 -2,-0.0 -3,-0.0 0, 0.0 0.712 90.3 74.7 -67.3 -20.7 41.1 14.4 -2.5 56 59 A A G < S+ 0 0 39 -3,-1.9 -1,-0.2 2,-0.0 2,-0.1 0.393 72.1 99.9 -79.2 2.6 40.1 16.8 -5.3 57 60 A S < + 0 0 30 -3,-1.0 2,-0.3 -4,-0.1 -43,-0.0 -0.388 44.7 179.5 -84.6 167.0 36.5 17.6 -4.2 58 61 A N > - 0 0 67 -2,-0.1 4,-2.3 1,-0.0 5,-0.2 -0.928 45.4 -91.9-154.2 168.9 35.4 20.7 -2.4 59 62 A E H > S+ 0 0 148 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.814 123.2 54.0 -60.0 -32.6 32.1 22.0 -1.1 60 63 A K H > S+ 0 0 172 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.913 110.4 47.9 -67.3 -41.1 31.3 24.0 -4.3 61 64 A I H > S+ 0 0 29 1,-0.2 4,-1.6 -3,-0.2 -2,-0.2 0.926 114.9 44.7 -63.6 -46.7 31.8 20.8 -6.3 62 65 A L H X S+ 0 0 10 -4,-2.3 4,-2.5 1,-0.2 -2,-0.2 0.858 109.9 54.1 -69.3 -35.2 29.6 18.7 -4.0 63 66 A E H X S+ 0 0 83 -4,-2.5 4,-2.4 2,-0.2 -1,-0.2 0.902 106.7 53.0 -66.1 -37.8 26.8 21.4 -3.7 64 67 A A H X S+ 0 0 28 -4,-1.8 4,-1.4 1,-0.2 -1,-0.2 0.924 111.8 45.2 -61.3 -44.3 26.6 21.4 -7.5 65 68 A I H X S+ 0 0 0 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.898 111.3 52.3 -66.3 -42.0 26.2 17.6 -7.6 66 69 A L H X S+ 0 0 21 -4,-2.5 4,-2.5 1,-0.2 -2,-0.2 0.900 108.2 51.8 -62.2 -39.6 23.6 17.7 -4.8 67 70 A L H X S+ 0 0 94 -4,-2.4 4,-1.8 2,-0.2 -1,-0.2 0.839 109.1 49.9 -67.1 -31.8 21.6 20.3 -6.6 68 71 A V H X S+ 0 0 4 -4,-1.4 4,-2.7 2,-0.2 5,-0.2 0.918 110.3 50.2 -70.9 -42.6 21.6 18.1 -9.8 69 72 A W H X S+ 0 0 0 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.928 109.5 51.2 -60.4 -44.2 20.4 15.1 -7.7 70 73 A L H < S+ 0 0 71 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.905 111.3 48.8 -59.2 -41.2 17.7 17.3 -6.2 71 74 A D H < S+ 0 0 110 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.907 111.0 48.2 -65.0 -44.7 16.6 18.3 -9.7 72 75 A E H < 0 0 54 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.823 360.0 360.0 -65.5 -31.2 16.6 14.7 -11.0 73 76 A A < 0 0 71 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.908 360.0 360.0 -77.3 360.0 14.6 13.7 -7.9