==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 01-SEP-03 1UKU . COMPND 2 MOLECULE: PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN CUT . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR Y.TANAKA,Y.YASUTAKE,M.YAO,N.SAKAI,I.TANAKA,K.TSUMOTO,I.KUMAG . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6571.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 68.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 26.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 16 0, 0.0 84,-2.2 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 169.6 19.6 24.5 3.5 2 2 A I E -AB 57 84A 0 55,-2.6 55,-2.1 82,-0.2 2,-0.4 -0.934 360.0-136.7-134.7 156.9 22.9 23.6 5.1 3 3 A I E -AB 56 83A 37 80,-2.7 80,-2.7 -2,-0.3 2,-0.4 -0.913 16.6-163.0-103.8 142.2 24.4 22.5 8.4 4 4 A V E -AB 55 82A 0 51,-2.3 51,-3.1 -2,-0.4 2,-0.4 -0.997 4.7-162.2-123.8 127.8 27.6 24.0 9.6 5 5 A Y E +AB 54 81A 62 76,-2.6 76,-2.5 -2,-0.4 2,-0.3 -0.908 19.5 154.9-109.5 133.4 29.6 22.3 12.4 6 6 A T E -A 53 0A 0 47,-1.9 47,-2.8 -2,-0.4 2,-0.3 -0.933 28.4-134.3-145.0 166.2 32.3 24.0 14.5 7 7 A T E -A 52 0A 16 72,-0.4 45,-0.2 -2,-0.3 72,-0.2 -0.945 12.7-161.7-127.9 153.1 33.8 23.5 17.9 8 8 A F E -A 51 0A 1 43,-2.4 43,-2.8 -2,-0.3 3,-0.1 -0.918 30.0-119.6-132.0 152.6 34.5 25.8 20.8 9 9 A P S S- 0 0 43 0, 0.0 2,-0.3 0, 0.0 40,-0.1 0.752 88.8 -23.5 -71.4 -22.8 36.7 25.6 23.9 10 10 A D S > S- 0 0 88 41,-0.1 4,-2.0 40,-0.1 41,-0.2 -0.952 75.5 -77.9-166.8-167.4 33.7 26.1 26.2 11 11 A W H > S+ 0 0 71 -2,-0.3 4,-2.9 2,-0.2 5,-0.3 0.789 114.2 58.7 -72.9 -36.2 30.3 27.4 26.6 12 12 A E H > S+ 0 0 151 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.953 113.0 39.2 -64.3 -47.7 30.9 31.1 27.0 13 13 A S H > S+ 0 0 28 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.920 116.4 51.6 -65.1 -44.2 32.7 31.4 23.7 14 14 A A H X S+ 0 0 0 -4,-2.0 4,-2.5 1,-0.2 5,-0.2 0.935 114.6 42.2 -59.1 -48.3 30.2 29.1 22.0 15 15 A E H X S+ 0 0 77 -4,-2.9 4,-2.8 2,-0.2 5,-0.2 0.907 113.9 51.6 -68.3 -39.9 27.2 31.0 23.3 16 16 A K H X S+ 0 0 141 -4,-2.4 4,-2.2 -5,-0.3 -2,-0.2 0.947 114.4 43.2 -60.6 -47.5 28.7 34.4 22.6 17 17 A V H X S+ 0 0 7 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.948 115.9 47.4 -66.4 -46.2 29.5 33.5 19.0 18 18 A V H X S+ 0 0 10 -4,-2.5 4,-2.3 -5,-0.3 -1,-0.2 0.908 111.7 49.6 -64.3 -40.8 26.2 31.8 18.3 19 19 A K H X S+ 0 0 120 -4,-2.8 4,-2.7 2,-0.2 -1,-0.2 0.900 110.8 50.9 -66.8 -37.9 24.2 34.6 19.8 20 20 A T H X S+ 0 0 25 -4,-2.2 4,-2.0 -5,-0.2 -2,-0.2 0.907 110.1 50.0 -61.4 -41.2 26.2 37.1 17.6 21 21 A L H <>S+ 0 0 1 -4,-2.2 5,-2.4 2,-0.2 6,-0.7 0.885 111.4 48.5 -68.2 -37.6 25.5 35.0 14.5 22 22 A L H ><5S+ 0 0 63 -4,-2.3 3,-1.7 3,-0.2 -2,-0.2 0.933 110.4 50.9 -64.7 -46.0 21.8 35.0 15.4 23 23 A K H 3<5S+ 0 0 168 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.860 110.5 49.4 -59.2 -36.0 21.8 38.8 15.9 24 24 A E T 3<5S- 0 0 69 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.392 111.6-126.3 -83.5 -0.6 23.4 39.1 12.5 25 25 A R T < 5S+ 0 0 117 -3,-1.7 76,-2.7 2,-0.1 -3,-0.2 0.724 72.6 128.1 62.1 31.1 20.7 36.9 11.1 26 26 A L S S-C 44 0A 119 3,-2.7 3,-1.4 -2,-0.4 -2,-0.0 -0.933 72.4 -28.9-135.4 115.1 49.7 18.4 19.0 42 42 A E T 3 S- 0 0 135 -2,-0.3 3,-0.1 1,-0.3 -2,-0.0 0.874 125.2 -43.2 50.8 51.7 53.5 18.4 18.5 43 43 A G T 3 S+ 0 0 67 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.578 121.9 96.8 78.9 9.0 54.0 14.6 18.4 44 44 A K E < S- C 0 41A 103 -3,-1.4 -3,-2.7 -5,-0.0 2,-0.6 -0.963 78.4-114.7-128.4 147.1 51.5 13.9 21.2 45 45 A I E - C 0 40A 122 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.730 40.3-164.5 -81.1 122.2 47.9 12.9 21.3 46 46 A E E - C 0 39A 58 -7,-3.3 -7,-2.2 -2,-0.6 2,-0.4 -0.827 9.9-157.9-107.3 143.5 46.1 15.8 23.0 47 47 A E E + C 0 38A 99 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.957 11.4 178.4-115.1 147.7 42.6 15.8 24.5 48 48 A D E - C 0 37A 55 -11,-1.9 -11,-3.0 -2,-0.4 2,-0.4 -0.983 27.6-129.1-144.2 135.4 40.5 18.9 25.0 49 49 A K E + C 0 36A 108 -2,-0.3 2,-0.3 -13,-0.2 -13,-0.2 -0.704 44.0 167.2 -80.1 130.5 36.9 19.3 26.4 50 50 A E E - C 0 35A 15 -15,-2.6 -15,-2.1 -2,-0.4 2,-0.5 -0.845 39.9-118.7-136.3 171.8 34.9 21.4 24.0 51 51 A V E -AC 8 34A 0 -43,-2.8 -43,-2.4 -2,-0.3 2,-0.3 -0.986 29.2-150.8-116.3 117.7 31.4 22.5 23.0 52 52 A G E -AC 7 33A 0 -19,-2.8 -19,-2.1 -2,-0.5 2,-0.4 -0.666 8.3-153.9 -85.3 149.0 30.4 21.4 19.5 53 53 A A E -AC 6 32A 0 -47,-2.8 -47,-1.9 -2,-0.3 2,-0.6 -0.991 9.9-162.9-132.3 122.8 27.9 23.6 17.6 54 54 A I E -AC 5 31A 52 -23,-2.6 -23,-2.1 -2,-0.4 2,-0.3 -0.934 19.1-168.0-102.9 113.7 25.5 22.5 14.9 55 55 A L E -AC 4 30A 1 -51,-3.1 -51,-2.3 -2,-0.6 2,-0.4 -0.815 8.5-154.6-107.5 144.2 24.3 25.6 13.0 56 56 A K E +AC 3 29A 25 -27,-2.3 -28,-2.7 -2,-0.3 -27,-1.0 -0.969 32.0 130.7-122.7 127.2 21.5 25.7 10.5 57 57 A T E -A 2 0A 0 -55,-2.1 -55,-2.6 -2,-0.4 2,-0.2 -0.890 53.3 -68.0-156.1-175.2 21.3 28.3 7.7 58 58 A R > - 0 0 29 -2,-0.3 3,-1.3 -57,-0.2 4,-0.3 -0.610 37.2-123.2 -83.5 150.1 20.7 28.9 4.0 59 59 A E G > S+ 0 0 81 -2,-0.2 3,-1.8 1,-0.2 4,-0.3 0.884 109.9 58.7 -53.7 -44.6 23.1 27.8 1.3 60 60 A D G 3 S+ 0 0 110 1,-0.3 4,-0.3 2,-0.1 -1,-0.2 0.678 100.9 57.2 -67.7 -14.4 23.5 31.3 -0.1 61 61 A L G <> S+ 0 0 5 -3,-1.3 4,-2.7 1,-0.2 -1,-0.3 0.452 77.6 100.8 -91.9 -0.5 24.8 32.5 3.3 62 62 A W H <> S+ 0 0 33 -3,-1.8 4,-3.0 -4,-0.3 5,-0.2 0.903 81.5 43.6 -53.9 -53.5 27.7 30.0 3.5 63 63 A E H > S+ 0 0 117 -4,-0.3 4,-2.3 1,-0.2 -1,-0.2 0.925 116.9 46.3 -66.0 -40.6 30.6 32.3 2.5 64 64 A E H > S+ 0 0 84 -4,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.899 115.4 47.3 -64.4 -41.4 29.4 35.2 4.7 65 65 A L H X S+ 0 0 0 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.920 110.1 52.1 -67.5 -43.6 28.8 32.9 7.6 66 66 A K H X S+ 0 0 57 -4,-3.0 4,-2.3 -5,-0.3 -2,-0.2 0.925 110.6 48.5 -59.3 -44.3 32.2 31.2 7.2 67 67 A E H X S+ 0 0 79 -4,-2.3 4,-2.1 -5,-0.2 -1,-0.2 0.928 111.3 49.8 -63.2 -43.0 33.9 34.6 7.2 68 68 A R H X S+ 0 0 57 -4,-2.2 4,-1.6 1,-0.2 -2,-0.2 0.907 109.6 50.6 -64.7 -39.0 32.1 35.7 10.3 69 69 A I H X S+ 0 0 0 -4,-2.7 4,-1.9 1,-0.2 3,-0.4 0.928 109.0 51.9 -63.5 -41.4 32.9 32.6 12.2 70 70 A K H < S+ 0 0 112 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.912 112.1 47.2 -57.4 -42.0 36.6 33.0 11.2 71 71 A E H < S+ 0 0 105 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.709 120.5 36.5 -72.7 -23.3 36.4 36.6 12.6 72 72 A L H < S+ 0 0 46 -4,-1.6 -1,-0.2 -3,-0.4 -2,-0.2 0.601 89.3 112.8-103.2 -11.6 34.6 35.5 15.8 73 73 A H < - 0 0 18 -4,-1.9 -65,-0.1 -5,-0.2 -59,-0.0 -0.363 58.3-146.4 -78.7 137.3 36.3 32.2 16.6 74 74 A P S S+ 0 0 62 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.695 80.2 82.3 -67.5 -19.7 38.5 31.7 19.7 75 75 A Y S S- 0 0 56 -68,-0.2 -2,-0.1 1,-0.1 -3,-0.0 -0.737 72.3-145.2 -88.0 138.2 40.7 29.2 17.7 76 76 A D S S+ 0 0 168 -2,-0.4 -1,-0.1 1,-0.3 -3,-0.1 0.870 104.4 26.4 -57.6 -43.3 43.4 30.3 15.3 77 77 A V S S+ 0 0 132 -3,-0.0 -1,-0.3 2,-0.0 2,-0.1 -0.748 87.8 178.9-125.2 81.7 42.5 27.4 13.1 78 78 A P - 0 0 29 0, 0.0 2,-0.6 0, 0.0 -70,-0.1 -0.438 33.0-114.4 -79.4 159.0 38.8 26.5 13.8 79 79 A A + 0 0 40 -72,-0.2 -72,-0.4 -2,-0.1 2,-0.4 -0.841 34.1 177.0 -86.6 123.2 36.9 23.7 12.1 80 80 A I - 0 0 30 -2,-0.6 2,-0.5 -74,-0.1 -74,-0.2 -0.833 12.0-179.5-130.5 95.4 34.2 25.3 9.9 81 81 A I E -B 5 0A 77 -76,-2.5 -76,-2.6 -2,-0.4 2,-0.5 -0.859 15.4-158.1-114.4 117.2 32.5 22.4 8.2 82 82 A R E -B 4 0A 89 -2,-0.5 2,-0.5 -78,-0.2 -78,-0.2 -0.833 10.1-179.1 -95.9 124.6 29.6 22.7 5.7 83 83 A I E -B 3 0A 100 -80,-2.7 -80,-2.7 -2,-0.5 2,-0.1 -0.990 24.9-131.6-121.5 121.6 27.3 19.7 5.2 84 84 A D E -B 2 0A 81 -2,-0.5 2,-0.6 -82,-0.2 -82,-0.2 -0.429 15.3-126.5 -71.6 144.2 24.5 20.1 2.7 85 85 A V - 0 0 41 -84,-2.2 3,-0.1 1,-0.1 -1,-0.1 -0.819 13.5-159.5 -93.8 119.8 21.0 19.0 3.6 86 86 A D S S- 0 0 164 -2,-0.6 2,-0.3 1,-0.2 -1,-0.1 0.792 71.9 -9.9 -74.2 -27.0 19.6 16.7 1.0 87 87 A D + 0 0 145 2,-0.0 2,-0.3 -86,-0.0 -1,-0.2 -0.961 60.7 179.3-165.2 155.3 16.0 17.2 2.1 88 88 A V - 0 0 36 -2,-0.3 2,-0.1 -3,-0.1 -3,-0.0 -0.976 42.6 -86.9-153.1 152.2 14.0 18.8 4.8 89 89 A N > - 0 0 88 -2,-0.3 4,-2.0 1,-0.1 3,-0.5 -0.423 39.9-128.1 -61.9 135.3 10.3 19.3 5.7 90 90 A E H > S+ 0 0 115 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.824 102.6 59.5 -59.0 -39.4 9.0 22.4 4.0 91 91 A D H > S+ 0 0 119 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.899 110.0 44.9 -59.6 -38.4 7.5 24.1 7.1 92 92 A Y H > S+ 0 0 62 -3,-0.5 4,-2.8 2,-0.2 -1,-0.2 0.928 111.6 51.7 -68.8 -45.1 10.9 24.1 8.7 93 93 A L H X S+ 0 0 40 -4,-2.0 4,-2.3 1,-0.2 5,-0.2 0.926 109.0 51.3 -58.4 -42.1 12.7 25.3 5.6 94 94 A K H X S+ 0 0 105 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.916 110.7 48.5 -61.8 -42.5 10.2 28.2 5.3 95 95 A W H X S+ 0 0 95 -4,-1.8 4,-2.1 2,-0.2 -1,-0.2 0.929 110.1 51.3 -62.0 -46.0 10.8 29.2 8.9 96 96 A L H X S+ 0 0 0 -4,-2.8 4,-0.6 1,-0.2 -2,-0.2 0.901 111.4 47.4 -61.3 -40.8 14.6 29.0 8.5 97 97 A I H >< S+ 0 0 65 -4,-2.3 3,-1.0 1,-0.2 -1,-0.2 0.927 111.3 51.8 -64.8 -42.1 14.4 31.3 5.4 98 98 A E H 3< S+ 0 0 107 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.871 110.8 48.6 -60.5 -36.6 12.1 33.7 7.3 99 99 A E H 3< S+ 0 0 62 -4,-2.1 2,-0.3 -5,-0.1 -1,-0.2 0.508 99.3 79.2 -88.0 -3.9 14.5 33.9 10.2 100 100 A T S << S- 0 0 2 -3,-1.0 -74,-0.2 -4,-0.6 -75,-0.1 -0.740 90.7 -83.9-109.5 159.7 17.7 34.5 8.2 101 101 A K 0 0 75 -76,-2.7 -1,-0.1 -2,-0.3 -2,-0.1 -0.074 360.0 360.0 -67.6 151.9 18.9 37.8 6.7 102 102 A K 0 0 193 -4,-0.1 -1,-0.1 0, 0.0 -4,-0.0 0.147 360.0 360.0-125.6 360.0 17.7 39.1 3.3