==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA/METAL BINDING PROTEIN 08-NOV-11 3UK3 . COMPND 2 MOLECULE: 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*T . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.S.VANDEVENNE,D.A.JACQUES,J.M.GUSS,J.P.MACKAY . 106 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9070.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 9.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 34.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 471 C R 0 0 177 0, 0.0 9,-1.3 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 -7.2 40.2 20.0 44.4 2 472 C E B -A 9 0A 113 7,-0.2 2,-0.4 2,-0.0 7,-0.2 -0.802 360.0-135.5 -94.3 132.7 36.6 21.3 44.8 3 473 C C > - 0 0 1 5,-2.6 4,-1.1 -2,-0.4 14,-0.0 -0.718 4.4-152.4 -83.8 134.8 34.0 20.5 42.2 4 474 C S T 4 S+ 0 0 112 -2,-0.4 -1,-0.1 2,-0.2 -2,-0.0 0.631 90.0 55.1 -82.6 -15.5 31.8 23.4 41.2 5 475 C Y T 4 S+ 0 0 136 3,-0.1 -1,-0.1 1,-0.1 15,-0.0 0.924 128.2 8.8 -81.3 -49.5 28.8 21.3 40.2 6 476 C C T 4 S- 0 0 51 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.425 91.4-123.7-115.8 -4.4 28.3 19.2 43.4 7 477 C G < + 0 0 36 -4,-1.1 -3,-0.1 1,-0.2 0, 0.0 0.390 60.0 145.9 76.2 -3.6 30.6 20.9 45.9 8 478 C K - 0 0 127 -6,-0.1 -5,-2.6 1,-0.1 2,-0.3 -0.285 41.8-135.2 -67.6 151.6 32.4 17.6 46.6 9 479 C F B -A 2 0A 142 -7,-0.2 2,-0.3 2,-0.0 -7,-0.2 -0.783 18.4-162.5-104.8 152.3 36.1 17.5 47.4 10 480 C F - 0 0 41 -9,-1.3 3,-0.0 -2,-0.3 6,-0.0 -0.870 30.7-112.9-134.9 163.8 38.6 15.0 46.0 11 481 C R S S+ 0 0 213 -2,-0.3 2,-0.3 1,-0.1 3,-0.1 0.744 93.7 10.4 -73.0 -23.4 42.1 13.8 46.8 12 482 C S > - 0 0 33 -11,-0.1 4,-1.9 1,-0.1 5,-0.1 -0.973 65.1-118.6-151.8 162.7 43.8 15.3 43.8 13 483 C N H > S+ 0 0 114 -2,-0.3 4,-2.3 2,-0.2 5,-0.2 0.819 113.2 61.7 -69.4 -35.0 43.4 17.7 40.8 14 484 C Y H > S+ 0 0 173 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.940 110.3 38.3 -55.2 -50.5 44.0 14.7 38.5 15 485 C Y H > S+ 0 0 66 2,-0.2 4,-3.0 1,-0.2 -2,-0.2 0.858 110.8 59.3 -74.7 -32.0 41.0 12.9 39.8 16 486 C L H X S+ 0 0 15 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.915 104.2 52.8 -57.1 -43.3 38.9 16.1 40.1 17 487 C N H X S+ 0 0 88 -4,-2.3 4,-0.5 1,-0.2 -1,-0.2 0.890 111.7 44.8 -59.0 -41.4 39.5 16.5 36.3 18 488 C I H >< S+ 0 0 22 -4,-1.3 3,-1.2 1,-0.2 4,-0.4 0.903 109.6 56.9 -66.8 -41.5 38.2 13.0 35.8 19 489 C H H >< S+ 0 0 20 -4,-3.0 3,-2.2 1,-0.3 4,-0.4 0.886 93.9 66.2 -59.1 -42.0 35.2 13.6 38.1 20 490 C L H >X S+ 0 0 49 -4,-2.2 4,-3.2 1,-0.3 3,-1.4 0.757 87.6 69.7 -53.7 -28.9 34.0 16.6 36.2 21 491 C R H > S- 0 0 67 1,-0.1 4,-1.2 -11,-0.1 3,-0.7 -0.883 79.9-125.0-119.6 149.4 36.2 6.6 33.2 41 511 C K H 3> S+ 0 0 127 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.834 106.7 59.7 -58.4 -40.5 38.3 3.6 32.0 42 512 C T H 3> S+ 0 0 82 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.861 101.7 54.9 -60.8 -36.1 36.7 1.1 34.3 43 513 C S H <> S+ 0 0 59 -3,-0.7 4,-2.4 2,-0.2 -1,-0.2 0.907 110.1 45.7 -62.6 -43.9 33.3 1.7 32.7 44 514 C L H X S+ 0 0 31 -4,-1.2 4,-2.6 2,-0.2 -2,-0.2 0.899 112.0 52.7 -64.0 -42.3 34.7 1.0 29.2 45 515 C R H X S+ 0 0 133 -4,-2.5 4,-1.6 2,-0.2 -2,-0.2 0.909 111.1 45.6 -61.1 -43.5 36.4 -2.1 30.6 46 516 C Y H X S+ 0 0 136 -4,-2.6 4,-1.6 2,-0.2 5,-0.3 0.922 111.6 53.4 -64.2 -45.1 33.1 -3.4 32.0 47 517 C H H X>S+ 0 0 15 -4,-2.4 4,-1.8 1,-0.2 5,-0.6 0.919 109.4 47.6 -54.4 -49.4 31.3 -2.6 28.8 48 518 C L H X5S+ 0 0 48 -4,-2.6 4,-0.8 3,-0.2 -1,-0.2 0.852 108.1 57.3 -61.5 -37.3 33.8 -4.6 26.7 49 519 C E H <5S+ 0 0 155 -4,-1.6 -2,-0.2 3,-0.2 -1,-0.2 0.954 117.7 24.5 -64.4 -55.9 33.7 -7.6 29.0 50 520 C R H <5S+ 0 0 170 -4,-1.6 -1,-0.2 2,-0.1 -2,-0.2 0.827 130.6 38.7 -83.9 -33.3 29.9 -8.5 28.9 51 521 C H H <5 0 0 121 -4,-1.8 -3,-0.2 -5,-0.3 -2,-0.1 0.941 360.0 360.0 -82.2 -51.8 28.9 -6.9 25.6 52 522 C H << 0 0 101 -4,-0.8 -3,-0.2 -5,-0.6 -4,-0.1 0.470 360.0 360.0-112.2 360.0 31.9 -7.7 23.4 53 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 54 470 D S 0 0 111 0, 0.0 16,-0.2 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-175.4 2.9 -19.0 29.4 55 471 D R + 0 0 111 15,-0.1 9,-3.0 14,-0.1 2,-0.5 0.273 360.0 92.1-132.1 6.2 4.9 -17.9 32.5 56 472 D E B S-C 63 0C 106 7,-0.2 2,-0.4 3,-0.0 7,-0.2 -0.913 75.7-124.6-106.8 128.9 8.5 -18.7 31.2 57 473 D C > - 0 0 2 5,-2.6 4,-1.6 -2,-0.5 -2,-0.0 -0.572 8.5-151.1 -74.1 126.2 10.5 -16.0 29.4 58 474 D S T 4 S+ 0 0 105 -2,-0.4 -1,-0.1 2,-0.1 -2,-0.0 0.653 93.6 46.8 -70.9 -16.2 11.7 -17.1 26.0 59 475 D Y T 4 S+ 0 0 142 3,-0.1 -1,-0.1 1,-0.0 -2,-0.0 0.937 129.0 11.9 -87.4 -59.2 14.7 -14.8 26.3 60 476 D C T 4 S- 0 0 59 2,-0.1 -2,-0.1 0, 0.0 -1,-0.0 0.424 90.6-123.7-108.9 -2.5 16.2 -15.3 29.8 61 477 D G < + 0 0 38 -4,-1.6 -3,-0.1 1,-0.2 2,-0.0 0.370 56.8 148.0 79.0 -3.0 14.4 -18.4 31.1 62 478 D K - 0 0 133 -6,-0.1 -5,-2.6 1,-0.1 2,-0.4 -0.336 40.4-137.1 -69.3 147.0 13.0 -16.9 34.2 63 479 D F B -C 56 0C 127 -7,-0.2 2,-0.2 2,-0.0 -7,-0.2 -0.901 19.7-158.6-108.9 133.4 9.7 -18.2 35.5 64 480 D F - 0 0 34 -9,-3.0 3,-0.0 -2,-0.4 4,-0.0 -0.695 27.4-120.5-117.9 163.6 7.0 -15.8 36.8 65 481 D R S S+ 0 0 217 -2,-0.2 2,-0.3 1,-0.1 3,-0.1 0.647 94.4 20.7 -74.6 -19.1 4.0 -15.9 39.0 66 482 D S > - 0 0 31 -11,-0.1 4,-2.0 1,-0.1 -1,-0.1 -0.994 64.4-129.0-149.1 150.0 1.6 -14.8 36.3 67 483 D N H > S+ 0 0 80 -2,-0.3 4,-2.3 2,-0.2 5,-0.2 0.835 112.5 63.0 -59.4 -35.5 1.2 -14.5 32.5 68 484 D Y H > S+ 0 0 168 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.919 107.4 38.3 -57.3 -49.9 0.3 -10.9 33.3 69 485 D Y H > S+ 0 0 68 2,-0.2 4,-3.5 1,-0.2 -1,-0.2 0.861 110.8 60.3 -75.9 -32.6 3.7 -10.1 34.8 70 486 D L H X S+ 0 0 5 -4,-2.0 4,-2.6 1,-0.2 -2,-0.2 0.939 103.8 51.2 -53.5 -48.9 5.6 -12.2 32.2 71 487 D N H X S+ 0 0 75 -4,-2.3 4,-0.7 2,-0.2 -1,-0.2 0.848 112.2 46.1 -60.7 -35.3 4.2 -10.0 29.4 72 488 D I H >< S+ 0 0 16 -4,-1.1 3,-1.4 1,-0.2 4,-0.5 0.958 110.9 54.0 -66.8 -51.2 5.4 -6.9 31.3 73 489 D H H >< S+ 0 0 18 -4,-3.5 3,-1.8 1,-0.3 4,-0.4 0.855 98.5 63.0 -49.0 -43.3 8.7 -8.6 31.9 74 490 D L H >X S+ 0 0 38 -4,-2.6 4,-2.4 1,-0.3 3,-1.7 0.800 87.8 71.2 -56.8 -31.3 9.1 -9.3 28.1 75 491 D R H S- 0 0 64 -11,-0.1 4,-1.1 1,-0.1 3,-0.4 -0.877 80.7-122.8-123.7 153.1 6.7 -0.3 33.6 95 511 D K H > S+ 0 0 142 -2,-0.3 4,-2.0 1,-0.2 5,-0.2 0.842 107.2 60.0 -61.7 -37.1 4.6 2.3 35.4 96 512 D T H > S+ 0 0 91 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.875 101.0 54.4 -63.5 -38.4 7.0 2.7 38.3 97 513 D S H > S+ 0 0 55 -3,-0.4 4,-2.0 2,-0.2 -1,-0.2 0.879 109.4 46.8 -61.8 -42.0 9.9 3.9 36.1 98 514 D L H X S+ 0 0 27 -4,-1.1 4,-2.6 2,-0.2 -1,-0.2 0.912 111.6 51.5 -66.5 -42.5 7.8 6.7 34.5 99 515 D R H X S+ 0 0 141 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.908 111.8 46.2 -60.8 -44.1 6.6 7.8 38.0 100 516 D Y H X S+ 0 0 165 -4,-2.4 4,-1.6 2,-0.2 -1,-0.2 0.885 111.3 53.4 -63.1 -41.0 10.2 7.9 39.3 101 517 D H H X>S+ 0 0 28 -4,-2.0 4,-2.3 1,-0.2 5,-0.5 0.905 109.3 48.2 -62.1 -43.4 11.2 9.8 36.1 102 518 D L H X5S+ 0 0 60 -4,-2.6 4,-1.2 1,-0.2 -1,-0.2 0.906 110.4 51.5 -60.4 -44.4 8.5 12.4 36.7 103 519 D E H <5S+ 0 0 128 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.800 120.9 31.2 -67.8 -28.9 9.4 12.9 40.3 104 520 D R H <5S+ 0 0 175 -4,-1.6 3,-0.2 -5,-0.1 -2,-0.2 0.721 126.5 33.3-107.3 -24.8 13.1 13.5 39.6 105 521 D H H <5S+ 0 0 131 -4,-2.3 2,-0.4 -5,-0.2 -3,-0.2 0.607 119.8 49.6-104.6 -18.8 13.5 15.2 36.1 106 522 D H << 0 0 61 -4,-1.2 -1,-0.2 -5,-0.5 -2,-0.0 -0.688 360.0 360.0-122.7 78.5 10.2 17.2 36.3 107 523 D K 0 0 123 -2,-0.4 -1,-0.1 -3,-0.2 -3,-0.1 0.220 360.0 360.0-170.2 360.0 10.2 19.1 39.6