==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-OCT-03 1V2Y . COMPND 2 MOLECULE: 3300001G02RIK PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR C.ZHAO,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,S.YOKOYAMA,RIKEN . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8082.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 65.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 16.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 18.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-123.1 -8.7 -29.5 1.3 2 2 A S - 0 0 127 0, 0.0 2,-0.7 0, 0.0 0, 0.0 -0.942 360.0-157.0-148.1 121.1 -5.8 -27.9 -0.6 3 3 A S + 0 0 124 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.877 27.0 155.7-102.8 109.5 -4.6 -24.3 -0.4 4 4 A G - 0 0 75 -2,-0.7 2,-0.6 1,-0.1 -1,-0.1 0.664 61.3 -25.7 -94.9-108.8 -2.7 -23.2 -3.5 5 5 A S + 0 0 136 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.937 68.2 166.5-119.4 108.6 -2.4 -19.6 -4.4 6 6 A S + 0 0 128 -2,-0.6 2,-0.3 -3,-0.1 -3,-0.0 -0.906 32.8 51.0-122.0 149.8 -5.1 -17.3 -3.1 7 7 A G S S- 0 0 22 -2,-0.3 2,-0.3 16,-0.1 18,-0.2 -0.890 70.1 -89.7 129.1-159.3 -5.3 -13.5 -3.0 8 8 A M E -A 24 0A 9 16,-1.3 16,-1.1 -2,-0.3 2,-0.8 -0.986 19.4-119.7-154.7 157.3 -4.8 -10.6 -5.4 9 9 A T E -A 23 0A 60 -2,-0.3 79,-0.8 14,-0.2 2,-0.6 -0.860 28.6-170.6-105.9 100.4 -2.1 -8.3 -6.7 10 10 A V E -Ab 22 88A 0 12,-3.0 12,-3.5 -2,-0.8 2,-0.3 -0.821 14.4-143.1 -94.4 118.2 -3.0 -4.7 -6.0 11 11 A R E -Ab 21 89A 117 77,-1.7 79,-2.0 -2,-0.6 2,-0.6 -0.618 7.9-160.1 -82.5 137.2 -0.7 -2.2 -7.7 12 12 A V E -Ab 20 90A 0 8,-1.3 2,-2.4 -2,-0.3 8,-1.1 -0.798 2.4-161.5-120.5 86.5 0.3 0.9 -5.8 13 13 A C E -Ab 19 91A 42 77,-4.1 79,-1.2 -2,-0.6 6,-0.3 -0.457 26.3-140.5 -68.6 81.0 1.4 3.5 -8.3 14 14 A K - 0 0 78 -2,-2.4 -1,-0.0 4,-1.3 -3,-0.0 0.055 24.0-101.1 -40.2 153.9 3.2 5.6 -5.7 15 15 A M S S+ 0 0 122 1,-0.2 -1,-0.1 78,-0.1 4,-0.1 0.884 125.5 53.6 -47.0 -46.6 2.9 9.3 -6.2 16 16 A D S S- 0 0 120 2,-0.1 -1,-0.2 1,-0.1 3,-0.1 0.955 121.7-106.7 -53.8 -56.1 6.3 9.4 -7.7 17 17 A G S S+ 0 0 35 1,-0.4 -3,-0.1 -5,-0.1 -1,-0.1 -0.189 80.8 118.8 158.3 -52.2 5.5 6.7 -10.2 18 18 A E - 0 0 145 -5,-0.2 -4,-1.3 1,-0.1 -1,-0.4 -0.204 55.5-146.0 -46.5 116.6 7.1 3.5 -9.2 19 19 A V E -A 13 0A 58 -6,-0.3 -6,-0.3 -3,-0.1 -1,-0.1 -0.662 5.9-149.1 -91.0 145.9 4.3 1.1 -8.6 20 20 A M E -A 12 0A 15 -8,-1.1 -8,-1.3 -2,-0.3 2,-0.8 -0.972 13.0-131.1-121.3 124.0 4.4 -1.6 -5.9 21 21 A P E -A 11 0A 64 0, 0.0 2,-0.3 0, 0.0 -10,-0.2 -0.614 31.4-171.7 -75.0 108.8 2.7 -5.0 -6.2 22 22 A V E -A 10 0A 2 -12,-3.5 -12,-3.0 -2,-0.8 2,-0.4 -0.740 11.4-142.7-102.5 151.0 0.8 -5.5 -3.0 23 23 A V E +A 9 0A 97 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.887 27.7 154.3-114.9 145.0 -0.9 -8.7 -1.9 24 24 A V E -A 8 0A 12 -16,-1.1 -16,-1.3 -2,-0.4 4,-0.1 -0.951 45.4 -74.2-157.7 170.7 -4.2 -9.0 -0.0 25 25 A V > - 0 0 77 -2,-0.3 3,-1.3 -18,-0.2 -18,-0.0 -0.318 46.8-108.6 -70.7 155.9 -7.1 -11.3 0.6 26 26 A Q T 3 S+ 0 0 95 1,-0.3 -1,-0.1 -2,-0.0 54,-0.1 0.714 124.0 40.4 -56.7 -20.4 -9.8 -11.7 -2.1 27 27 A N T 3 S+ 0 0 82 52,-0.1 -1,-0.3 53,-0.0 -2,-0.1 -0.464 88.3 144.3-127.4 58.3 -11.9 -9.7 0.3 28 28 A A < - 0 0 2 -3,-1.3 51,-2.0 1,-0.1 52,-0.6 -0.300 33.6-142.5 -89.0 176.7 -9.5 -7.1 1.6 29 29 A T B > -E 78 0B 31 49,-0.3 4,-2.4 50,-0.1 49,-0.2 -0.702 34.3 -89.0-130.9-177.8 -10.2 -3.5 2.5 30 30 A V H > S+ 0 0 0 47,-0.9 4,-1.8 44,-0.5 45,-0.2 0.886 125.7 52.2 -61.1 -40.4 -8.6 -0.1 2.3 31 31 A L H >> S+ 0 0 70 44,-0.4 4,-2.3 2,-0.2 3,-0.9 0.988 107.9 48.3 -58.5 -64.5 -7.0 -0.7 5.7 32 32 A D H 3> S+ 0 0 49 1,-0.3 4,-4.3 2,-0.2 5,-0.2 0.903 106.3 59.0 -40.6 -56.4 -5.5 -4.1 4.8 33 33 A L H 3X S+ 0 0 1 -4,-2.4 4,-3.5 1,-0.3 -1,-0.3 0.885 108.5 45.4 -39.9 -51.9 -4.1 -2.5 1.6 34 34 A K H S+ 0 0 79 -4,-0.3 4,-2.9 -5,-0.3 5,-0.2 0.885 116.7 54.6 -49.8 -43.2 8.5 -7.9 5.8 44 44 A K H > S+ 0 0 95 -4,-0.3 4,-1.5 -5,-0.2 -1,-0.2 0.966 110.4 43.5 -55.1 -58.5 10.9 -7.4 2.9 45 45 A Q H ><>S+ 0 0 48 -4,-2.6 5,-0.7 1,-0.2 3,-0.6 0.923 112.0 54.4 -52.7 -50.2 13.4 -5.4 4.9 46 46 A E H ><5S+ 0 0 156 -4,-3.3 3,-1.5 1,-0.3 -1,-0.2 0.915 112.4 42.5 -50.0 -50.2 13.1 -7.9 7.8 47 47 A R H 3<5S+ 0 0 222 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.2 0.682 117.9 48.5 -70.7 -18.4 13.9 -10.7 5.4 48 48 A E T <<5S- 0 0 147 -4,-1.5 -1,-0.3 -3,-0.6 -2,-0.2 0.138 122.1-108.2-105.8 16.2 16.6 -8.5 3.9 49 49 A G T < 5S+ 0 0 74 -3,-1.5 2,-0.3 1,-0.2 -3,-0.3 0.982 71.3 138.0 53.8 70.1 17.9 -7.6 7.3 50 50 A G < - 0 0 33 -5,-0.7 2,-0.4 -8,-0.2 -1,-0.2 -0.997 48.2-132.8-146.3 146.0 16.7 -4.0 7.5 51 51 A V - 0 0 127 -2,-0.3 -9,-0.0 1,-0.1 -6,-0.0 -0.831 37.1-101.2-101.8 136.5 15.1 -1.7 10.1 52 52 A Q + 0 0 115 -2,-0.4 -1,-0.1 1,-0.1 3,-0.0 -0.175 43.7 165.0 -53.0 143.3 12.0 0.3 9.3 53 53 A H + 0 0 178 -3,-0.0 2,-0.5 1,-0.0 -1,-0.1 -0.011 40.3 104.0-152.8 31.0 12.8 4.0 8.6 54 54 A I - 0 0 75 3,-0.0 2,-2.3 0, 0.0 3,-0.2 -0.982 67.1-134.8-124.8 121.5 9.6 5.2 6.9 55 55 A S > + 0 0 85 -2,-0.5 4,-2.5 1,-0.2 3,-0.2 -0.500 32.8 168.3 -74.2 79.0 7.1 7.3 8.8 56 56 A W H > S+ 0 0 32 -2,-2.3 4,-3.4 1,-0.2 5,-0.4 0.794 70.8 70.1 -62.0 -27.7 4.0 5.4 7.7 57 57 A S H > S+ 0 0 100 -3,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.963 108.8 30.0 -52.7 -60.4 2.2 7.4 10.3 58 58 A Y H 4 S+ 0 0 152 -3,-0.2 5,-0.3 2,-0.2 -2,-0.2 0.926 118.3 57.6 -66.1 -47.3 2.5 10.7 8.4 59 59 A V H >X S+ 0 0 36 -4,-2.5 4,-3.4 1,-0.3 3,-1.2 0.941 114.9 36.7 -47.0 -59.1 2.5 9.0 5.0 60 60 A W H 3< S+ 0 0 38 -4,-3.4 2,-0.3 1,-0.3 -1,-0.3 0.872 117.7 54.3 -62.3 -37.5 -0.9 7.4 5.8 61 61 A R T 3< S+ 0 0 180 -4,-2.1 -1,-0.3 -5,-0.4 -2,-0.2 -0.172 119.5 33.0 -89.6 40.0 -1.8 10.6 7.6 62 62 A T T <4 S+ 0 0 19 -3,-1.2 33,-1.5 1,-0.6 2,-0.3 0.322 117.4 38.7-155.4 -45.7 -1.0 12.6 4.5 63 63 A Y E < -C 94 0A 42 -4,-3.4 -1,-0.6 -5,-0.3 31,-0.2 -0.809 61.7-156.6-118.9 159.9 -1.8 10.6 1.4 64 64 A H E -C 93 0A 52 29,-1.9 29,-2.0 -2,-0.3 2,-0.5 -0.649 26.9 -96.8-124.3-179.0 -4.6 8.3 0.4 65 65 A L E +CD 92 72A 0 7,-0.9 7,-2.7 27,-0.2 2,-0.3 -0.918 41.4 179.5-108.0 123.1 -5.1 5.5 -2.0 66 66 A T E +CD 91 71A 25 25,-4.5 25,-3.6 -2,-0.5 5,-0.2 -0.810 19.1 167.2-120.0 160.9 -6.8 6.3 -5.3 67 67 A S S S- 0 0 34 3,-0.6 -1,-0.1 -2,-0.3 4,-0.1 0.522 77.9 -23.6-133.2 -62.5 -7.8 4.3 -8.4 68 68 A A S S- 0 0 73 2,-0.3 3,-0.1 23,-0.0 22,-0.0 -0.379 117.2 -47.0-161.3 69.9 -10.1 6.1 -10.7 69 69 A G S S+ 0 0 71 1,-0.2 2,-0.9 0, 0.0 -3,-0.0 -0.022 108.8 114.5 89.1 -29.9 -12.1 8.9 -8.9 70 70 A E - 0 0 86 12,-0.1 2,-0.7 1,-0.0 -3,-0.6 -0.666 61.9-146.4 -79.2 107.6 -12.9 6.4 -6.1 71 71 A K E -D 66 0A 118 -2,-0.9 2,-1.8 -5,-0.2 3,-0.4 -0.664 5.9-143.9 -78.8 113.8 -11.1 7.7 -3.0 72 72 A L E +D 65 0A 1 -7,-2.7 -7,-0.9 -2,-0.7 -1,-0.1 -0.596 59.4 120.4 -80.4 84.0 -10.1 4.7 -0.9 73 73 A T + 0 0 55 -2,-1.8 -1,-0.2 -9,-0.1 -7,-0.0 0.777 43.3 85.1-109.6 -54.7 -10.7 6.2 2.5 74 74 A E - 0 0 117 -3,-0.4 -44,-0.5 1,-0.2 -43,-0.1 -0.304 50.0-174.4 -55.5 127.5 -13.3 4.0 4.2 75 75 A D S S+ 0 0 64 -45,-0.2 -44,-0.4 1,-0.1 -43,-0.2 0.715 83.2 60.0 -94.9 -28.0 -11.5 1.1 5.8 76 76 A R S S+ 0 0 250 -47,-0.1 2,-0.6 -46,-0.1 -1,-0.1 0.477 92.9 85.3 -77.8 -2.6 -14.7 -0.6 6.9 77 77 A K S S- 0 0 79 -4,-0.0 -47,-0.9 2,-0.0 -46,-0.1 -0.905 83.5-126.8-105.9 121.7 -15.5 -0.7 3.2 78 78 A K B >> -E 29 0B 85 -2,-0.6 3,-1.2 -49,-0.2 4,-0.8 -0.296 14.7-126.6 -63.6 148.1 -14.2 -3.7 1.2 79 79 A L H >>>S+ 0 0 2 -51,-2.0 5,-2.1 1,-0.3 3,-1.3 0.882 110.4 65.7 -62.6 -39.6 -12.2 -2.8 -1.9 80 80 A R H 345S+ 0 0 112 -52,-0.6 -1,-0.3 1,-0.3 -51,-0.1 0.725 100.4 53.0 -54.5 -21.7 -14.4 -5.1 -3.9 81 81 A D H <45S+ 0 0 89 -3,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.764 102.8 55.7 -83.8 -28.8 -17.1 -2.6 -3.0 82 82 A Y H <<5S- 0 0 26 -3,-1.3 -2,-0.2 -4,-0.8 -1,-0.2 0.606 125.3-102.7 -77.6 -13.0 -15.0 0.3 -4.4 83 83 A G T <5S+ 0 0 52 -4,-1.0 2,-0.5 1,-0.3 -3,-0.2 0.503 78.8 137.7 101.4 9.6 -14.8 -1.6 -7.7 84 84 A I < + 0 0 0 -5,-2.1 -1,-0.3 -6,-0.1 2,-0.2 -0.793 25.3 169.1 -92.8 125.3 -11.3 -2.8 -7.1 85 85 A R - 0 0 143 -2,-0.5 3,-0.3 1,-0.2 -77,-0.0 -0.589 43.5 -53.7-122.9-175.2 -10.7 -6.4 -8.1 86 86 A N S S+ 0 0 77 1,-0.2 -1,-0.2 -2,-0.2 -76,-0.1 -0.344 121.1 21.3 -63.1 141.0 -7.7 -8.7 -8.5 87 87 A R S S+ 0 0 210 -78,-0.3 2,-0.2 1,-0.2 -1,-0.2 0.973 92.4 150.5 63.7 57.6 -5.0 -7.4 -10.9 88 88 A D E -b 10 0A 43 -79,-0.8 -77,-1.7 -3,-0.3 2,-0.6 -0.688 47.1-120.6-115.4 169.4 -6.0 -3.7 -10.5 89 89 A E E +b 11 0A 123 -2,-0.2 2,-0.3 -79,-0.1 -77,-0.1 -0.938 34.7 171.3-117.5 109.7 -4.1 -0.5 -10.8 90 90 A V E -b 12 0A 1 -79,-2.0 -77,-4.1 -2,-0.6 2,-0.3 -0.889 6.3-175.1-118.0 148.5 -4.2 1.7 -7.7 91 91 A S E -bC 13 66A 37 -25,-3.6 -25,-4.5 -2,-0.3 -77,-0.2 -0.871 25.0-103.3-136.2 168.2 -2.2 4.9 -7.0 92 92 A F E - C 0 65A 26 -79,-1.2 2,-0.3 -2,-0.3 -27,-0.2 -0.486 29.7-161.6 -91.2 163.1 -1.6 7.3 -4.1 93 93 A I E - C 0 64A 49 -29,-2.0 -29,-1.9 -2,-0.2 2,-0.5 -0.956 16.0-124.6-142.5 158.6 -3.0 10.8 -3.8 94 94 A K E - C 0 63A 84 -2,-0.3 3,-0.3 -31,-0.2 -31,-0.2 -0.920 34.3-109.9-110.1 129.6 -2.3 13.9 -1.8 95 95 A K - 0 0 104 -33,-1.5 2,-0.4 -2,-0.5 -1,-0.1 0.082 65.6 -55.3 -46.2 166.0 -5.0 15.5 0.3 96 96 A L S S+ 0 0 185 1,-0.1 -1,-0.2 2,-0.0 2,-0.1 -0.299 91.5 135.0 -51.6 103.8 -6.4 18.9 -0.8 97 97 A G - 0 0 37 -2,-0.4 3,-0.1 -3,-0.3 -1,-0.1 -0.370 51.7-137.5-130.5-151.3 -3.2 20.9 -1.1 98 98 A Q S S+ 0 0 192 1,-0.5 -1,-0.1 -2,-0.1 2,-0.1 0.424 77.1 40.6-142.0 -60.1 -1.5 23.3 -3.5 99 99 A K - 0 0 160 0, 0.0 -1,-0.5 0, 0.0 2,-0.3 -0.340 66.2-149.8 -92.5 176.8 2.2 22.6 -3.9 100 100 A S - 0 0 80 -2,-0.1 -6,-0.0 -3,-0.1 0, 0.0 -0.992 24.7-101.4-150.0 149.8 3.9 19.2 -4.2 101 101 A G - 0 0 60 -2,-0.3 2,-0.0 1,-0.0 0, 0.0 -0.635 41.5-148.9 -77.0 113.9 7.3 17.7 -3.3 102 102 A P - 0 0 106 0, 0.0 3,-0.1 0, 0.0 -86,-0.0 -0.156 19.3-177.4 -75.0 173.7 9.5 17.6 -6.5 103 103 A S + 0 0 94 1,-0.5 2,-0.4 -87,-0.1 -87,-0.0 0.507 65.0 27.7-135.4 -58.5 12.1 15.0 -7.2 104 104 A S 0 0 115 0, 0.0 -1,-0.5 0, 0.0 0, 0.0 -0.889 360.0 360.0-116.8 146.7 13.9 15.7 -10.5 105 105 A G 0 0 129 -2,-0.4 -2,-0.0 -3,-0.1 0, 0.0 0.339 360.0 360.0 99.1 360.0 14.4 19.0 -12.2