==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 27-NOV-03 1V64 . COMPND 2 MOLECULE: NUCLEOLAR TRANSCRIPTION FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9155.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 56 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -88.6 -15.4 8.9 -18.6 2 2 A S + 0 0 118 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.860 360.0 166.3-111.2 98.6 -14.8 8.4 -14.9 3 3 A S - 0 0 120 -2,-0.7 -1,-0.1 1,-0.0 0, 0.0 -0.074 69.8 -84.4 -99.3 32.4 -16.3 11.2 -12.8 4 4 A G - 0 0 59 1,-0.0 3,-0.1 3,-0.0 -2,-0.1 0.990 47.9-169.0 64.1 81.7 -16.0 9.3 -9.5 5 5 A S S S+ 0 0 124 1,-0.1 2,-0.3 2,-0.0 -1,-0.0 0.933 71.9 14.1 -65.8 -47.5 -19.1 7.2 -9.3 6 6 A S S S- 0 0 110 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.854 70.1-155.4-127.5 163.1 -18.4 6.2 -5.7 7 7 A G - 0 0 79 -2,-0.3 2,-0.2 -3,-0.1 -2,-0.0 -0.520 11.1-122.0-124.0-167.9 -16.2 7.4 -2.9 8 8 A Q - 0 0 94 -2,-0.2 -1,-0.0 1,-0.0 0, 0.0 -0.750 9.6-137.5-131.5 178.7 -14.5 6.2 0.3 9 9 A L S S+ 0 0 175 -2,-0.2 -2,-0.0 1,-0.0 -1,-0.0 0.010 92.2 64.6-128.2 25.9 -14.4 7.0 4.0 10 10 A K S S- 0 0 143 3,-0.0 -1,-0.0 0, 0.0 0, 0.0 0.712 73.4-156.0-114.6 -42.2 -10.7 6.6 4.6 11 11 A D + 0 0 115 2,-0.1 4,-0.3 1,-0.1 3,-0.2 0.953 52.0 125.0 60.5 52.6 -9.1 9.3 2.5 12 12 A K > + 0 0 123 1,-0.1 4,-0.9 2,-0.1 2,-0.4 0.678 61.3 59.8-109.6 -30.1 -5.7 7.5 2.3 13 13 A F T 4 S+ 0 0 143 1,-0.1 -1,-0.1 2,-0.1 5,-0.1 -0.246 108.6 45.3 -94.6 45.1 -5.3 7.4 -1.5 14 14 A D T 4 S+ 0 0 119 -2,-0.4 -1,-0.1 2,-0.3 -2,-0.1 0.407 113.5 36.8-147.6 -48.6 -5.4 11.2 -1.8 15 15 A G T 4 S+ 0 0 34 -4,-0.3 -2,-0.1 1,-0.2 -3,-0.1 0.840 125.7 22.9 -83.4 -35.7 -3.2 12.8 0.8 16 16 A R S < S- 0 0 87 -4,-0.9 -2,-0.3 1,-0.1 3,-0.2 -0.937 83.6-107.7-132.1 154.7 -0.4 10.2 0.7 17 17 A P - 0 0 18 0, 0.0 2,-0.6 0, 0.0 -3,-0.1 0.098 68.9 -45.6 -66.7-174.3 0.8 7.6 -1.8 18 18 A T - 0 0 50 1,-0.1 59,-0.1 55,-0.1 60,-0.1 -0.412 64.0-134.0 -60.3 106.1 0.3 3.8 -1.5 19 19 A K - 0 0 142 -2,-0.6 -1,-0.1 -3,-0.2 52,-0.1 -0.495 19.8-136.8 -66.6 117.0 1.2 3.1 2.2 20 20 A P - 0 0 26 0, 0.0 47,-0.1 0, 0.0 -1,-0.1 -0.510 22.7-104.3 -77.6 142.7 3.6 0.0 2.2 21 21 A P - 0 0 30 0, 0.0 3,-0.1 0, 0.0 50,-0.0 -0.006 29.0-109.7 -57.6 168.3 3.0 -2.7 4.9 22 22 A P S S- 0 0 89 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.919 85.2 -30.4 -68.2 -45.4 5.4 -3.0 7.9 23 23 A N S > S- 0 0 68 1,-0.0 4,-2.0 44,-0.0 5,-0.1 -0.877 73.3 -77.1-157.1-172.8 7.0 -6.2 6.8 24 24 A S H > S+ 0 0 1 -2,-0.3 4,-3.4 2,-0.2 5,-0.3 0.857 121.9 60.3 -66.1 -36.0 6.6 -9.5 4.8 25 25 A Y H > S+ 0 0 81 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.964 111.3 37.1 -56.1 -57.1 4.6 -11.0 7.6 26 26 A S H > S+ 0 0 55 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.861 116.7 55.4 -64.4 -36.1 1.8 -8.4 7.5 27 27 A L H >X S+ 0 0 11 -4,-2.0 4,-1.7 1,-0.2 3,-0.5 0.947 106.3 48.7 -62.1 -50.4 2.1 -8.2 3.8 28 28 A Y H 3X S+ 0 0 21 -4,-3.4 4,-3.2 1,-0.2 5,-0.3 0.834 103.0 65.1 -59.1 -33.0 1.5 -11.9 3.3 29 29 A C H 3X S+ 0 0 23 -4,-1.5 4,-2.2 -5,-0.3 -1,-0.2 0.918 106.1 40.9 -56.0 -46.7 -1.5 -11.6 5.7 30 30 A A H X S+ 0 0 10 -4,-3.2 4,-3.2 2,-0.2 3,-0.9 0.943 112.4 52.4 -68.6 -49.2 -3.5 -14.8 1.8 33 33 A M H 3< S+ 0 0 57 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.852 106.4 56.1 -55.3 -35.4 -6.8 -13.2 3.0 34 34 A A H 3< S+ 0 0 68 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.819 115.0 37.6 -66.8 -31.1 -7.3 -11.9 -0.6 35 35 A N H << S+ 0 0 125 -4,-0.9 2,-2.2 -3,-0.9 3,-0.4 0.762 100.6 77.0 -89.8 -29.7 -7.0 -15.5 -1.8 36 36 A M >< + 0 0 53 -4,-3.2 3,-1.0 1,-0.2 -1,-0.2 -0.350 52.4 148.0 -79.5 59.1 -8.9 -17.1 1.1 37 37 A K T 3 S+ 0 0 186 -2,-2.2 2,-0.3 1,-0.3 -1,-0.2 0.829 70.0 55.5 -62.9 -32.4 -12.2 -16.0 -0.3 38 38 A D T 3 S+ 0 0 159 -3,-0.4 -1,-0.3 2,-0.1 -2,-0.1 -0.219 98.8 80.5 -94.9 43.0 -13.8 -19.0 1.3 39 39 A V S < S- 0 0 23 -3,-1.0 2,-0.0 -2,-0.3 -3,-0.0 -0.971 78.9-117.3-151.2 132.6 -12.6 -18.2 4.8 40 40 A P >> - 0 0 59 0, 0.0 4,-3.4 0, 0.0 3,-1.4 -0.349 33.6-110.1 -68.8 147.9 -13.8 -15.8 7.5 41 41 A S H 3> S+ 0 0 71 1,-0.3 4,-2.1 2,-0.2 5,-0.2 0.779 122.7 56.3 -46.7 -29.0 -11.5 -12.9 8.6 42 42 A T H 3> S+ 0 0 104 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.877 113.2 37.7 -72.4 -38.5 -11.2 -14.8 11.8 43 43 A E H <> S+ 0 0 114 -3,-1.4 4,-2.4 2,-0.2 -2,-0.2 0.837 115.6 54.6 -80.7 -35.1 -9.9 -17.9 10.0 44 44 A R H X S+ 0 0 62 -4,-3.4 4,-2.9 2,-0.2 5,-0.2 0.974 108.5 46.5 -61.4 -57.0 -7.9 -15.9 7.5 45 45 A M H X S+ 0 0 128 -4,-2.1 4,-0.8 1,-0.3 -1,-0.2 0.880 116.8 45.9 -53.3 -41.0 -5.9 -14.0 10.1 46 46 A V H X S+ 0 0 86 -4,-1.1 4,-1.2 -5,-0.2 3,-0.3 0.843 111.3 52.9 -71.7 -33.7 -5.3 -17.2 11.9 47 47 A L H X S+ 0 0 47 -4,-2.4 4,-3.7 1,-0.2 5,-0.4 0.910 99.6 61.0 -67.6 -43.4 -4.4 -19.0 8.7 48 48 A C H X S+ 0 0 3 -4,-2.9 4,-1.2 1,-0.3 -1,-0.2 0.811 103.6 53.1 -53.5 -31.0 -1.8 -16.3 7.8 49 49 A S H X S+ 0 0 38 -4,-0.8 4,-1.0 -3,-0.3 -1,-0.3 0.893 115.5 37.9 -72.2 -41.1 -0.0 -17.3 11.0 50 50 A Q H X S+ 0 0 107 -4,-1.2 4,-2.1 -3,-0.4 3,-0.4 0.938 116.2 50.1 -75.0 -49.8 0.1 -21.0 10.0 51 51 A Q H X S+ 0 0 58 -4,-3.7 4,-1.3 1,-0.3 -3,-0.2 0.814 113.4 48.7 -58.7 -30.6 0.7 -20.5 6.3 52 52 A W H < S+ 0 0 20 -4,-1.2 -1,-0.3 -5,-0.4 -2,-0.2 0.775 109.8 51.2 -79.8 -28.4 3.6 -18.2 7.3 53 53 A K H < S+ 0 0 147 -4,-1.0 -2,-0.2 -3,-0.4 -1,-0.2 0.784 113.7 43.9 -78.5 -29.1 5.0 -20.7 9.8 54 54 A L H < S+ 0 0 112 -4,-2.1 -2,-0.2 -5,-0.1 -1,-0.2 0.772 91.5 102.3 -85.5 -29.0 5.0 -23.5 7.2 55 55 A L S < S- 0 0 21 -4,-1.3 2,-0.0 -5,-0.3 -3,-0.0 -0.255 73.7-122.9 -57.1 139.9 6.4 -21.4 4.4 56 56 A S > - 0 0 67 1,-0.1 4,-2.7 4,-0.0 3,-0.2 -0.250 24.8-101.6 -79.7 171.2 10.1 -21.9 3.8 57 57 A Q H > S+ 0 0 127 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.906 124.2 53.1 -59.5 -43.5 12.8 -19.2 3.9 58 58 A K H > S+ 0 0 150 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.826 112.1 46.6 -61.7 -31.8 12.9 -19.0 0.1 59 59 A E H > S+ 0 0 64 -3,-0.2 4,-1.1 2,-0.2 3,-0.3 0.910 112.2 47.6 -76.8 -44.8 9.1 -18.5 0.1 60 60 A K H X S+ 0 0 49 -4,-2.7 4,-1.3 1,-0.2 -2,-0.2 0.823 106.8 59.5 -65.6 -31.4 9.2 -15.9 2.9 61 61 A D H X S+ 0 0 79 -4,-2.3 4,-1.3 -5,-0.2 -1,-0.2 0.852 98.0 59.3 -65.6 -35.0 12.0 -14.1 1.1 62 62 A A H X S+ 0 0 63 -4,-0.9 4,-1.0 -3,-0.3 3,-0.3 0.903 105.9 47.1 -60.6 -42.9 9.7 -13.6 -2.0 63 63 A Y H X S+ 0 0 52 -4,-1.1 4,-2.1 1,-0.2 -1,-0.2 0.816 103.0 64.6 -68.7 -30.9 7.2 -11.7 0.1 64 64 A H H X S+ 0 0 85 -4,-1.3 4,-2.6 1,-0.2 5,-0.2 0.870 98.6 54.1 -60.0 -37.7 10.0 -9.6 1.6 65 65 A K H X S+ 0 0 159 -4,-1.3 4,-2.8 -3,-0.3 -1,-0.2 0.900 106.9 50.8 -63.9 -41.8 10.7 -8.2 -1.9 66 66 A K H X S+ 0 0 81 -4,-1.0 4,-2.2 2,-0.2 -2,-0.2 0.918 111.5 47.7 -62.4 -44.8 7.1 -7.1 -2.3 67 67 A C H X S+ 0 0 3 -4,-2.1 4,-1.2 2,-0.2 -2,-0.2 0.953 116.4 42.4 -61.3 -51.3 7.1 -5.3 1.0 68 68 A D H X S+ 0 0 112 -4,-2.6 4,-1.6 1,-0.2 -2,-0.2 0.870 111.7 56.8 -63.4 -37.0 10.4 -3.5 0.3 69 69 A Q H X S+ 0 0 98 -4,-2.8 4,-1.9 1,-0.2 -1,-0.2 0.902 102.5 54.2 -61.1 -42.2 9.3 -2.8 -3.2 70 70 A K H X S+ 0 0 86 -4,-2.2 4,-2.3 1,-0.2 -1,-0.2 0.837 105.8 54.3 -61.3 -32.8 6.2 -1.0 -1.9 71 71 A K H X S+ 0 0 58 -4,-1.2 4,-2.3 2,-0.2 -1,-0.2 0.882 104.4 53.9 -68.8 -38.9 8.5 1.2 0.2 72 72 A K H X S+ 0 0 137 -4,-1.6 4,-1.9 2,-0.2 -2,-0.2 0.930 113.5 41.5 -61.1 -46.7 10.5 2.2 -2.9 73 73 A D H X S+ 0 0 80 -4,-1.9 4,-3.5 1,-0.2 5,-0.3 0.879 111.6 56.7 -68.6 -38.4 7.3 3.3 -4.7 74 74 A Y H X S+ 0 0 34 -4,-2.3 4,-1.9 -5,-0.2 -2,-0.2 0.896 107.4 49.0 -59.7 -41.4 6.0 4.9 -1.6 75 75 A E H X S+ 0 0 118 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.942 116.5 41.0 -64.0 -49.1 9.1 7.1 -1.3 76 76 A V H X S+ 0 0 79 -4,-1.9 4,-3.1 2,-0.2 5,-0.4 0.956 117.0 47.1 -64.2 -52.1 9.0 8.2 -4.9 77 77 A E H X S+ 0 0 55 -4,-3.5 4,-0.9 1,-0.2 -1,-0.2 0.822 116.9 46.3 -59.5 -31.3 5.2 8.7 -4.9 78 78 A L H X S+ 0 0 20 -4,-1.9 4,-2.6 -5,-0.3 -1,-0.2 0.827 113.8 48.0 -79.9 -34.1 5.6 10.6 -1.7 79 79 A L H X S+ 0 0 94 -4,-2.4 4,-2.4 2,-0.2 5,-0.3 0.958 112.5 46.0 -70.8 -52.7 8.5 12.6 -2.9 80 80 A R H X S+ 0 0 169 -4,-3.1 4,-0.7 1,-0.2 -1,-0.2 0.828 118.1 46.3 -59.5 -32.2 7.0 13.7 -6.2 81 81 A F H X S+ 0 0 76 -4,-0.9 4,-1.1 -5,-0.4 -2,-0.2 0.923 111.8 49.2 -76.2 -47.3 3.8 14.5 -4.3 82 82 A L H >< S+ 0 0 7 -4,-2.6 3,-1.9 1,-0.2 -2,-0.2 0.972 111.1 47.7 -56.1 -60.1 5.5 16.4 -1.5 83 83 A E H 3< S+ 0 0 146 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.820 105.9 62.1 -51.4 -32.5 7.6 18.6 -3.8 84 84 A S H 3< S+ 0 0 101 -4,-0.7 -1,-0.3 -5,-0.3 -2,-0.2 0.831 99.4 66.4 -63.7 -32.5 4.4 19.2 -5.7 85 85 A L S << S- 0 0 27 -3,-1.9 0, 0.0 -4,-1.1 0, 0.0 -0.538 94.8-100.6 -89.6 156.9 2.9 20.8 -2.6 86 86 A P > - 0 0 68 0, 0.0 4,-3.4 0, 0.0 5,-0.2 -0.001 40.5 -93.4 -66.4 177.6 4.1 24.1 -1.0 87 87 A E H > S+ 0 0 137 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.934 126.1 51.7 -59.4 -48.5 6.4 24.4 2.0 88 88 A E H > S+ 0 0 151 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.928 115.7 41.1 -54.6 -48.9 3.5 24.7 4.4 89 89 A E H > S+ 0 0 94 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.943 114.5 51.0 -65.2 -49.1 1.9 21.5 3.0 90 90 A Q H X S+ 0 0 36 -4,-3.4 4,-2.9 1,-0.2 5,-0.2 0.825 106.6 58.0 -57.9 -32.3 5.2 19.7 2.7 91 91 A Q H X S+ 0 0 109 -4,-2.6 4,-2.8 -5,-0.2 -1,-0.2 0.941 107.5 44.5 -64.1 -49.1 5.8 20.6 6.3 92 92 A R H < S+ 0 0 183 -4,-1.7 4,-0.3 2,-0.2 -2,-0.2 0.946 119.4 41.6 -60.9 -50.5 2.6 18.9 7.6 93 93 A V H >X>S+ 0 0 10 -4,-2.3 4,-2.9 1,-0.2 3,-0.9 0.902 119.4 44.9 -64.3 -42.4 3.2 15.8 5.4 94 94 A L H 3<>S+ 0 0 47 -4,-2.9 5,-1.0 -5,-0.3 -2,-0.2 0.829 110.3 55.0 -71.0 -32.8 6.9 15.7 6.2 95 95 A G T 3<5S+ 0 0 27 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.467 118.8 34.2 -79.9 -0.5 6.2 16.3 9.9 96 96 A E T <45S+ 0 0 114 -3,-0.9 -2,-0.2 -4,-0.3 4,-0.2 0.674 133.3 22.2-119.0 -39.8 3.9 13.3 10.0 97 97 A E T ><5S+ 0 0 29 -4,-2.9 3,-0.8 -5,-0.2 -3,-0.2 0.876 124.4 48.1 -95.6 -52.7 5.5 10.8 7.6 98 98 A K T 3