==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 26-JUL-07 2V75 . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR R.P.GRANT,N.J.MARSHALL,M.STEWART . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5505.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 74.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A Y > 0 0 147 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -2.2 23.2 14.9 0.6 2 7 A T H > + 0 0 56 2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.894 360.0 49.6 -70.3 -34.0 22.8 13.9 -3.0 3 8 A E H > S+ 0 0 127 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.952 114.0 44.8 -73.5 -42.4 24.6 16.8 -4.6 4 9 A N H > S+ 0 0 80 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.859 110.8 55.3 -66.6 -34.0 27.7 16.3 -2.3 5 10 A L H X S+ 0 0 0 -4,-2.0 4,-2.9 2,-0.2 5,-0.2 0.914 104.8 52.4 -63.9 -38.8 27.6 12.6 -2.9 6 11 A K H X S+ 0 0 35 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.925 111.8 47.2 -64.7 -38.6 27.8 13.0 -6.6 7 12 A V H X S+ 0 0 70 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.958 111.7 50.1 -66.4 -42.0 30.8 15.3 -6.1 8 13 A I H X S+ 0 0 1 -4,-2.6 4,-1.8 1,-0.2 -2,-0.2 0.912 111.1 48.5 -66.4 -39.0 32.4 12.8 -3.8 9 14 A V H X S+ 0 0 2 -4,-2.9 4,-2.9 1,-0.2 -1,-0.2 0.943 110.2 51.6 -65.5 -46.4 31.9 9.9 -6.2 10 15 A A H X S+ 0 0 25 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.859 107.7 53.3 -52.6 -41.2 33.3 12.0 -9.1 11 16 A E H < S+ 0 0 47 -4,-2.3 4,-0.4 2,-0.2 -1,-0.2 0.907 110.3 47.0 -64.6 -40.4 36.4 12.7 -6.9 12 17 A K H >< S+ 0 0 35 -4,-1.8 3,-1.6 1,-0.2 4,-0.3 0.960 112.6 49.3 -64.8 -49.0 36.9 9.0 -6.3 13 18 A L H >< S+ 0 0 2 -4,-2.9 3,-1.7 1,-0.3 -2,-0.2 0.880 103.3 61.3 -56.5 -40.0 36.5 8.2 -10.0 14 19 A A T 3< S+ 0 0 69 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.674 99.9 56.1 -62.7 -19.0 38.9 10.9 -11.0 15 20 A G T < S+ 0 0 62 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.469 81.3 106.0 -95.0 -0.5 41.7 9.1 -9.1 16 21 A I S X S- 0 0 30 -3,-1.7 3,-1.6 -4,-0.3 -3,-0.0 -0.656 73.5-124.7 -85.6 118.3 41.3 5.8 -10.9 17 22 A P T 3 S+ 0 0 105 0, 0.0 3,-0.1 0, 0.0 -2,-0.1 -0.369 91.4 9.1 -62.7 139.2 44.1 5.2 -13.3 18 23 A N T 3 S+ 0 0 161 1,-0.2 2,-0.8 2,-0.0 -2,-0.0 0.698 81.8 155.4 68.5 20.6 42.9 4.5 -16.9 19 24 A F < + 0 0 32 -3,-1.6 -1,-0.2 -6,-0.2 4,-0.1 -0.747 11.6 171.8 -82.9 112.7 39.4 5.4 -16.1 20 25 A N + 0 0 121 -2,-0.8 -1,-0.1 33,-0.1 3,-0.1 0.528 37.0 101.9-100.7 -5.9 38.0 6.4 -19.5 21 26 A E S S- 0 0 51 1,-0.1 2,-0.6 2,-0.1 3,-0.1 -0.231 87.8 -82.5 -87.8 165.8 34.3 6.9 -18.9 22 27 A D > - 0 0 103 1,-0.2 4,-2.6 2,-0.1 5,-0.2 -0.535 42.8-161.9 -68.7 111.1 32.2 10.1 -18.4 23 28 A I H > S+ 0 0 56 -2,-0.6 4,-2.9 2,-0.2 5,-0.2 0.915 84.9 52.1 -66.3 -43.3 32.8 10.7 -14.7 24 29 A K H > S+ 0 0 159 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.908 114.1 44.7 -63.0 -41.5 29.9 13.1 -14.2 25 30 A Y H > S+ 0 0 117 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.943 112.8 48.7 -69.2 -48.8 27.5 10.5 -15.7 26 31 A V H X S+ 0 0 1 -4,-2.6 4,-2.9 1,-0.2 5,-0.2 0.922 112.8 50.4 -56.1 -44.3 28.9 7.5 -13.8 27 32 A A H X S+ 0 0 2 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.934 111.7 47.2 -61.2 -42.3 28.7 9.5 -10.6 28 33 A E H X S+ 0 0 91 -4,-2.3 4,-2.2 -5,-0.2 -1,-0.2 0.894 112.5 49.3 -65.2 -39.9 25.1 10.5 -11.3 29 34 A Y H X S+ 0 0 44 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.931 110.6 50.8 -68.0 -44.3 24.2 6.9 -12.1 30 35 A I H X S+ 0 0 0 -4,-2.9 4,-2.4 1,-0.2 -2,-0.2 0.944 111.4 46.9 -56.9 -46.5 25.9 5.6 -8.9 31 36 A V H X S+ 0 0 3 -4,-2.4 4,-2.7 1,-0.2 5,-0.3 0.879 109.1 54.9 -68.0 -35.2 24.0 8.1 -6.8 32 37 A L H X S+ 0 0 94 -4,-2.2 4,-1.1 -5,-0.2 -1,-0.2 0.902 111.0 45.8 -57.5 -45.5 20.7 7.2 -8.5 33 38 A L H <>S+ 0 0 34 -4,-2.1 5,-1.8 2,-0.2 -2,-0.2 0.908 118.2 42.3 -67.0 -39.8 21.3 3.5 -7.7 34 39 A I H ><5S+ 0 0 7 -4,-2.4 3,-2.4 1,-0.2 4,-0.3 0.972 111.0 51.9 -77.0 -50.9 22.3 4.2 -4.0 35 40 A V H 3<5S+ 0 0 74 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.799 106.5 57.3 -57.5 -29.4 19.7 6.8 -3.1 36 41 A N T 3<5S- 0 0 122 -4,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.367 127.1 -89.4 -88.9 10.2 17.0 4.5 -4.4 37 42 A G T < 5 + 0 0 66 -3,-2.4 -3,-0.2 1,-0.2 -2,-0.1 0.682 64.8 163.1 101.1 16.7 17.8 1.6 -2.1 38 43 A G < - 0 0 19 -5,-1.8 -1,-0.2 -4,-0.3 2,-0.1 -0.347 34.8-126.2 -64.6 151.0 20.4 -0.6 -3.9 39 44 A T > - 0 0 70 1,-0.1 4,-2.2 -2,-0.0 5,-0.2 -0.481 30.9-105.6 -82.8 164.7 22.5 -3.1 -2.0 40 45 A V H > S+ 0 0 54 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.951 123.4 46.4 -55.7 -49.8 26.3 -2.9 -2.5 41 46 A E H > S+ 0 0 123 2,-0.2 4,-3.1 1,-0.2 -1,-0.2 0.896 111.4 50.0 -57.4 -45.1 26.1 -6.0 -4.7 42 47 A S H > S+ 0 0 54 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.848 111.8 48.4 -67.0 -36.2 23.2 -4.8 -6.8 43 48 A V H X S+ 0 0 0 -4,-2.2 4,-2.3 2,-0.2 -1,-0.2 0.933 114.0 45.5 -71.2 -43.2 24.8 -1.5 -7.4 44 49 A V H X S+ 0 0 4 -4,-2.2 4,-2.8 -5,-0.2 5,-0.2 0.967 112.5 52.4 -63.8 -47.4 28.2 -3.1 -8.4 45 50 A D H X S+ 0 0 81 -4,-3.1 4,-1.4 1,-0.2 -1,-0.2 0.892 110.2 47.6 -47.5 -49.8 26.3 -5.6 -10.6 46 51 A E H X S+ 0 0 71 -4,-2.0 4,-1.0 1,-0.2 3,-0.3 0.921 112.5 48.4 -67.0 -43.3 24.4 -2.8 -12.4 47 52 A L H >X S+ 0 0 0 -4,-2.3 4,-2.1 1,-0.2 3,-0.6 0.886 108.3 54.6 -64.2 -40.8 27.6 -0.7 -13.0 48 53 A A H 3< S+ 0 0 38 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.793 104.7 55.1 -60.8 -34.4 29.4 -3.8 -14.3 49 54 A S H 3< S+ 0 0 83 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.750 115.0 39.4 -67.8 -27.4 26.6 -4.3 -16.8 50 55 A L H << S+ 0 0 64 -4,-1.0 2,-0.5 -3,-0.6 -2,-0.2 0.745 117.8 41.6 -90.3 -27.8 27.1 -0.7 -18.1 51 56 A F >< + 0 0 14 -4,-2.1 3,-0.6 -5,-0.1 -1,-0.2 -0.905 47.1 171.4-135.2 99.0 30.9 -0.3 -18.1 52 57 A D T 3 S+ 0 0 160 -2,-0.5 -1,-0.1 1,-0.2 4,-0.1 0.449 77.2 72.5 -84.3 -3.2 33.2 -3.1 -19.3 53 58 A S T 3 S+ 0 0 54 2,-0.1 2,-0.4 1,-0.0 -1,-0.2 0.457 91.6 65.3 -85.8 -6.0 36.2 -0.8 -19.2 54 59 A V S < S- 0 0 18 -3,-0.6 -3,-0.1 -7,-0.1 -36,-0.0 -0.980 85.9-122.0-124.4 129.4 36.2 -0.9 -15.3 55 60 A S > - 0 0 59 -2,-0.4 4,-2.8 1,-0.1 5,-0.2 -0.271 18.5-122.2 -66.0 153.8 36.9 -4.0 -13.3 56 61 A R H > S+ 0 0 127 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.907 114.9 56.8 -63.0 -37.1 34.4 -5.3 -10.8 57 62 A D H > S+ 0 0 129 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.956 110.0 44.1 -58.2 -48.5 37.0 -4.9 -8.1 58 63 A T H > S+ 0 0 38 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.946 113.0 51.0 -63.1 -42.0 37.4 -1.2 -8.9 59 64 A L H X S+ 0 0 2 -4,-2.8 4,-3.1 1,-0.2 5,-0.2 0.910 108.4 53.5 -61.3 -43.1 33.7 -0.7 -9.2 60 65 A A H X S+ 0 0 22 -4,-3.0 4,-2.9 1,-0.2 5,-0.2 0.911 107.4 50.0 -58.6 -43.3 33.3 -2.3 -5.8 61 66 A N H X S+ 0 0 67 -4,-2.1 4,-2.3 2,-0.2 -1,-0.2 0.914 112.6 47.3 -57.8 -44.8 35.8 0.0 -4.2 62 67 A V H X S+ 0 0 2 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.930 114.3 46.9 -65.0 -48.5 34.0 3.0 -5.7 63 68 A V H X S+ 0 0 0 -4,-3.1 4,-2.6 2,-0.2 5,-0.3 0.922 111.6 50.6 -60.1 -48.7 30.7 1.7 -4.5 64 69 A Q H X S+ 0 0 112 -4,-2.9 4,-2.2 -5,-0.2 5,-0.2 0.937 111.7 48.9 -50.8 -46.8 32.0 0.9 -1.0 65 70 A T H X S+ 0 0 31 -4,-2.3 4,-3.1 -5,-0.2 -2,-0.2 0.925 109.3 52.9 -65.6 -37.3 33.4 4.4 -0.7 66 71 A A H X S+ 0 0 1 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.922 111.7 43.2 -63.0 -51.4 30.1 6.0 -1.9 67 72 A F H X S+ 0 0 57 -4,-2.6 4,-2.0 1,-0.2 -1,-0.2 0.900 115.7 50.3 -64.8 -40.5 28.0 4.2 0.7 68 73 A F H X S+ 0 0 163 -4,-2.2 4,-2.6 -5,-0.3 -2,-0.2 0.953 110.4 48.6 -57.9 -49.5 30.6 4.9 3.4 69 74 A A H X S+ 0 0 4 -4,-3.1 4,-3.0 1,-0.2 -2,-0.2 0.904 108.9 54.2 -59.6 -41.3 30.7 8.6 2.4 70 75 A L H X S+ 0 0 28 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.912 109.7 46.7 -58.5 -47.9 26.9 8.9 2.5 71 76 A E H X S+ 0 0 91 -4,-2.0 4,-1.7 2,-0.2 -2,-0.2 0.946 111.9 51.6 -61.5 -45.1 26.8 7.5 6.1 72 77 A A H <>S+ 0 0 18 -4,-2.6 5,-2.3 1,-0.2 4,-0.3 0.927 108.5 50.7 -58.2 -47.7 29.6 9.8 7.1 73 78 A L H ><5S+ 0 0 2 -4,-3.0 3,-1.8 1,-0.2 -1,-0.2 0.924 108.0 52.6 -53.5 -49.4 27.7 12.7 5.7 74 79 A Q H 3<5S+ 0 0 105 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.796 105.1 56.0 -57.1 -29.9 24.5 11.7 7.6 75 80 A Q T 3<5S- 0 0 146 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.2 0.471 128.8-100.8 -84.5 -1.7 26.6 11.6 10.8 76 81 A G T < 5 + 0 0 60 -3,-1.8 -3,-0.2 -4,-0.3 -2,-0.1 0.512 68.6 152.3 100.2 7.0 27.5 15.2 10.1 77 82 A E < - 0 0 63 -5,-2.3 -1,-0.3 -6,-0.2 2,-0.2 -0.410 50.5-109.0 -65.0 143.3 31.0 14.8 8.6 78 83 A S > - 0 0 46 1,-0.1 4,-1.8 -2,-0.1 5,-0.1 -0.508 11.3-132.5 -78.6 141.3 31.8 17.7 6.2 79 84 A A H > S+ 0 0 18 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.887 107.5 57.8 -57.8 -38.5 31.9 17.0 2.4 80 85 A E H > S+ 0 0 161 1,-0.2 4,-3.0 2,-0.2 -1,-0.2 0.933 105.2 48.9 -53.8 -50.4 35.3 19.0 2.2 81 86 A N H > S+ 0 0 82 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.888 112.3 49.2 -60.3 -39.6 36.9 16.6 4.8 82 87 A I H X S+ 0 0 13 -4,-1.8 4,-2.1 2,-0.2 -1,-0.2 0.932 111.6 48.0 -67.6 -45.9 35.6 13.6 2.8 83 88 A V H X S+ 0 0 18 -4,-2.8 4,-2.6 2,-0.2 5,-0.2 0.920 108.6 54.5 -55.8 -46.5 37.0 15.1 -0.5 84 89 A S H X S+ 0 0 66 -4,-3.0 4,-2.2 1,-0.2 -2,-0.2 0.905 108.8 49.4 -59.2 -38.1 40.3 15.8 1.1 85 90 A K H X S+ 0 0 109 -4,-1.9 4,-1.7 2,-0.2 -1,-0.2 0.911 111.9 47.6 -65.6 -44.4 40.6 12.1 2.3 86 91 A I H < S+ 0 0 24 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.889 112.8 48.8 -64.9 -42.6 39.7 10.8 -1.2 87 92 A R H < S+ 0 0 160 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.866 106.6 55.5 -66.8 -39.0 42.2 13.2 -2.9 88 93 A M H < 0 0 164 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.959 360.0 360.0 -52.9 -51.4 45.1 12.2 -0.5 89 94 A M < 0 0 179 -4,-1.7 -1,-0.2 -5,-0.1 -2,-0.2 0.652 360.0 360.0 -63.2 360.0 44.6 8.6 -1.4