==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-DEC-03 1V80 . COMPND 2 MOLECULE: UBIQUITIN/60S RIBOSOMAL PROTEIN L40 FUSION; . SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; . AUTHOR R.KITAHARA,S.YOKOYAMA,K.AKASAKA,RIKEN STRUCTURAL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5071.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 61 0, 0.0 2,-0.6 0, 0.0 62,-0.1 0.000 360.0 360.0 360.0 142.3 0.6 -7.9 9.4 2 2 A Q + 0 0 117 14,-0.2 62,-1.4 12,-0.0 14,-0.2 -0.879 360.0 179.6-121.2 97.6 1.4 -4.3 10.1 3 3 A I E -A 15 0A 2 -2,-0.6 12,-4.0 12,-0.6 63,-0.3 -0.401 12.4-143.7 -90.2 170.1 2.7 -2.5 7.0 4 4 A F E -Ab 14 66A 35 61,-4.0 63,-2.4 10,-0.3 2,-0.3 -0.744 0.5-141.1-128.1 175.6 3.7 1.1 6.7 5 5 A V E -Ab 13 67A 0 8,-0.8 8,-2.0 61,-0.3 2,-0.7 -0.998 4.5-149.2-143.8 137.3 3.5 4.0 4.2 6 6 A K E -Ab 12 68A 99 61,-0.9 63,-4.1 -2,-0.3 6,-0.2 -0.920 20.6-167.9-111.3 109.0 6.0 6.7 3.3 7 7 A T > - 0 0 15 4,-1.7 3,-0.8 -2,-0.7 63,-0.1 -0.019 43.8 -86.4 -80.3-171.3 4.4 9.9 2.2 8 8 A L T 3 S+ 0 0 128 1,-0.3 62,-0.1 2,-0.1 -1,-0.1 0.838 133.3 51.5 -66.8 -33.8 6.0 12.9 0.6 9 9 A T T 3 S- 0 0 99 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.517 116.2-119.7 -79.7 -6.0 7.0 14.2 4.0 10 10 A G < + 0 0 28 -3,-0.8 -2,-0.1 1,-0.3 -1,-0.1 0.107 59.1 157.3 88.3 -21.3 8.5 10.8 4.7 11 11 A K - 0 0 126 -5,-0.2 -4,-1.7 1,-0.1 2,-0.6 -0.006 39.8-131.8 -37.2 136.3 6.0 10.4 7.6 12 12 A T E -A 6 0A 76 -6,-0.2 2,-0.5 -3,-0.1 -6,-0.2 -0.889 21.8-168.9-103.9 115.4 5.6 6.7 8.3 13 13 A I E -A 5 0A 25 -8,-2.0 -8,-0.8 -2,-0.6 2,-0.2 -0.909 15.7-136.5-107.0 125.6 2.0 5.6 8.7 14 14 A T E -A 4 0A 69 -2,-0.5 2,-0.3 -10,-0.2 -10,-0.3 -0.531 21.7-167.4 -80.1 145.0 1.3 2.1 10.1 15 15 A L E -A 3 0A 5 -12,-4.0 -12,-0.6 -2,-0.2 49,-0.2 -0.897 21.5-151.4-130.9 159.6 -1.4 -0.0 8.4 16 16 A E + 0 0 139 -2,-0.3 -14,-0.2 -14,-0.2 2,-0.1 -0.493 44.4 139.4-130.0 61.7 -3.2 -3.2 9.3 17 17 A V - 0 0 6 -2,-0.1 -14,-0.0 1,-0.1 -2,-0.0 -0.178 44.5-115.3 -92.0-172.0 -4.0 -4.8 6.0 18 18 A E > - 0 0 94 4,-0.1 3,-1.1 -2,-0.1 38,-0.3 -0.871 17.4-119.3-127.7 160.7 -3.8 -8.5 4.9 19 19 A P T 3 S+ 0 0 59 0, 0.0 38,-1.6 0, 0.0 39,-0.1 0.483 118.5 51.5 -75.0 -2.6 -1.8 -10.5 2.4 20 20 A S T 3 S+ 0 0 96 36,-0.1 -3,-0.0 37,-0.1 0, 0.0 0.432 95.5 90.0-109.4 -6.4 -5.1 -11.3 0.8 21 21 A D S < S- 0 0 23 -3,-1.1 35,-0.8 1,-0.1 36,-0.3 0.009 75.0-113.0 -77.3-170.9 -6.3 -7.8 0.6 22 22 A T > - 0 0 30 33,-0.2 4,-1.0 1,-0.1 33,-0.2 -0.783 17.1-114.1-124.5 168.3 -5.7 -5.4 -2.3 23 23 A I H >> S+ 0 0 0 28,-0.6 4,-2.6 31,-0.5 3,-1.2 0.945 117.4 55.4 -65.5 -50.3 -3.7 -2.2 -3.0 24 24 A E H 3> S+ 0 0 103 1,-0.3 4,-1.4 2,-0.2 -1,-0.2 0.746 106.8 54.2 -54.1 -24.0 -6.8 -0.2 -3.5 25 25 A N H 3> S+ 0 0 64 2,-0.2 4,-0.6 -3,-0.2 -1,-0.3 0.796 108.4 48.0 -79.7 -31.1 -7.8 -1.5 -0.1 26 26 A V H XX S+ 0 0 2 -3,-1.2 3,-1.4 -4,-1.0 4,-1.3 0.951 111.6 47.5 -72.8 -52.5 -4.5 -0.2 1.4 27 27 A K H >X S+ 0 0 33 -4,-2.6 4,-1.7 1,-0.3 3,-0.7 0.902 103.8 62.8 -54.5 -44.2 -4.7 3.2 -0.1 28 28 A A H 3X S+ 0 0 53 -4,-1.4 4,-1.0 -5,-0.3 -1,-0.3 0.813 104.4 49.0 -50.6 -32.0 -8.3 3.4 1.1 29 29 A K H - 0 0 63 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 -0.419 16.9-127.8 -75.0 149.9 -8.4 12.0 -0.8 38 38 A P G > S+ 0 0 89 0, 0.0 3,-1.0 0, 0.0 -10,-0.0 0.438 97.9 87.6 -74.9 0.7 -7.6 9.1 -3.1 39 39 A D G 3 S+ 0 0 113 1,-0.3 33,-0.0 33,-0.0 -3,-0.0 0.814 103.1 25.9 -67.5 -31.0 -7.6 11.7 -5.9 40 40 A Q G < S+ 0 0 85 -3,-1.3 2,-0.4 31,-0.1 -1,-0.3 -0.312 102.3 110.7-127.9 47.6 -3.9 12.4 -5.2 41 41 A Q < + 0 0 6 -3,-1.0 2,-0.2 30,-0.1 30,-0.1 -0.950 30.9 167.2-125.8 145.0 -2.9 9.1 -3.7 42 42 A R E -C 70 0A 76 28,-0.5 28,-1.7 -2,-0.4 2,-0.4 -0.715 19.2-154.3-160.2 101.8 -0.6 6.4 -5.0 43 43 A L E -C 69 0A 1 -2,-0.2 7,-0.5 26,-0.2 2,-0.4 -0.667 18.7-175.7 -81.7 127.3 0.8 3.5 -2.9 44 44 A I E -C 68 0A 25 24,-2.4 24,-2.1 -2,-0.4 2,-0.4 -0.959 9.8-155.7-126.5 143.7 4.0 2.1 -4.2 45 45 A F E > S-CD 67 48A 27 3,-1.7 3,-2.1 -2,-0.4 22,-0.1 -0.933 73.6 -7.5-121.4 143.6 6.1 -0.8 -3.0 46 46 A A T 3 S- 0 0 83 20,-0.5 -1,-0.2 -2,-0.4 3,-0.1 0.854 126.5 -62.9 41.0 43.3 9.7 -1.5 -3.4 47 47 A G T 3 S+ 0 0 65 1,-0.2 2,-0.4 -3,-0.2 -1,-0.3 0.881 111.9 125.9 50.5 44.0 9.8 1.5 -5.7 48 48 A K B < -D 45 0A 92 -3,-2.1 -3,-1.7 0, 0.0 -1,-0.2 -0.982 68.6-100.8-134.1 144.6 7.4 -0.3 -8.0 49 49 A Q - 0 0 127 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.1 -0.388 38.4-149.1 -64.3 135.4 4.1 0.7 -9.5 50 50 A L - 0 0 13 -7,-0.5 2,-0.3 -2,-0.1 -1,-0.1 -0.758 4.4-148.5-107.4 154.6 1.1 -1.0 -7.7 51 51 A E - 0 0 116 -2,-0.3 -28,-0.6 1,-0.1 3,-0.4 -0.913 21.0-135.0-123.8 150.4 -2.2 -2.0 -9.1 52 52 A D S S+ 0 0 79 -2,-0.3 -27,-0.1 1,-0.2 -28,-0.1 0.487 110.3 56.0 -78.3 -3.2 -5.7 -2.1 -7.6 53 53 A G S S+ 0 0 71 -31,-0.1 -1,-0.2 2,-0.1 -3,-0.0 0.641 97.9 73.7 -99.7 -21.4 -6.0 -5.5 -9.3 54 54 A R S S- 0 0 109 -3,-0.4 -31,-0.5 1,-0.0 2,-0.3 -0.002 72.6-134.8 -79.5-170.5 -2.9 -7.0 -7.7 55 55 A T > - 0 0 21 -33,-0.2 4,-1.1 1,-0.1 6,-0.2 -0.968 19.9-117.0-147.9 159.9 -2.5 -8.2 -4.1 56 56 A L H >>>S+ 0 0 2 -35,-0.8 5,-2.3 -38,-0.3 3,-1.1 0.955 119.3 48.7 -61.4 -52.7 0.0 -7.9 -1.3 57 57 A S H 345S+ 0 0 71 -38,-1.6 -1,-0.2 1,-0.3 -37,-0.1 0.719 114.0 49.4 -59.7 -20.8 0.6 -11.7 -1.3 58 58 A D H 345S+ 0 0 82 1,-0.2 -1,-0.3 -39,-0.1 -2,-0.2 0.653 110.9 48.5 -90.4 -19.9 1.1 -11.2 -5.0 59 59 A Y H <<5S- 0 0 10 -4,-1.1 -2,-0.2 -3,-1.1 -1,-0.2 0.415 115.0-114.6 -97.6 -2.0 3.5 -8.4 -4.5 60 60 A N T <5 + 0 0 131 -4,-0.9 -3,-0.2 1,-0.3 -4,-0.1 0.538 61.9 160.7 78.7 7.4 5.5 -10.3 -1.9 61 61 A I < + 0 0 9 -5,-2.3 -1,-0.3 -6,-0.2 2,-0.2 -0.376 10.4 168.7 -63.7 137.3 4.3 -7.7 0.6 62 62 A Q > - 0 0 116 1,-0.1 3,-0.9 -3,-0.1 2,-0.2 -0.467 39.1 -49.5-130.2-158.8 4.6 -8.9 4.2 63 63 A K T 3 S+ 0 0 132 1,-0.2 -60,-0.2 -2,-0.2 -1,-0.1 -0.539 120.6 20.1 -82.9 149.1 4.4 -7.5 7.7 64 64 A E T 3 S+ 0 0 146 -62,-1.4 2,-0.4 1,-0.3 -1,-0.2 0.599 89.8 153.3 69.1 10.9 6.3 -4.4 8.7 65 65 A S < - 0 0 11 -3,-0.9 -61,-4.0 1,-0.0 2,-0.5 -0.595 35.8-145.6 -76.8 128.7 6.4 -3.7 5.0 66 66 A T E -b 4 0A 54 -2,-0.4 -20,-0.5 -63,-0.3 -61,-0.3 -0.828 14.6-165.1 -99.6 132.0 6.7 -0.0 4.2 67 67 A L E -bC 5 45A 3 -63,-2.4 -61,-0.9 -2,-0.5 2,-0.4 -0.266 19.9-112.2-100.3-171.0 5.0 1.4 1.1 68 68 A H E -bC 6 44A 82 -24,-2.1 -24,-2.4 -63,-0.2 2,-0.7 -0.980 19.3-164.4-133.0 119.9 5.5 4.7 -0.7 69 69 A L E + C 0 43A 12 -63,-4.1 -59,-0.2 -2,-0.4 -26,-0.2 -0.902 26.1 154.6-107.4 108.7 2.8 7.4 -0.8 70 70 A V E - C 0 42A 40 -28,-1.7 -28,-0.5 -2,-0.7 2,-0.1 -0.560 40.1 -94.1-120.2-175.2 3.4 9.9 -3.5 71 71 A L - 0 0 93 -2,-0.2 2,-0.2 -30,-0.1 -1,-0.1 -0.347 32.9-148.9 -94.9 178.4 1.3 12.3 -5.6 72 72 A R - 0 0 143 1,-0.3 3,-0.1 -2,-0.1 -30,-0.1 -0.688 35.5 -53.2-135.3-172.5 -0.2 11.9 -9.0 73 73 A L S S- 0 0 116 -2,-0.2 -1,-0.3 1,-0.1 0, 0.0 -0.030 70.1 -82.8 -59.5 170.0 -1.2 13.8 -12.1 74 74 A R - 0 0 214 1,-0.1 -1,-0.1 -34,-0.0 0, 0.0 0.125 30.7-132.7 -63.8-174.1 -3.4 16.9 -11.9 75 75 A G 0 0 67 -3,-0.1 -1,-0.1 -35,-0.0 -2,-0.1 0.798 360.0 360.0-107.9 -62.5 -7.2 16.7 -11.7 76 76 A G 0 0 120 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.323 360.0 360.0 157.4 360.0 -8.6 19.2 -14.1