==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-DEC-03 1V81 . COMPND 2 MOLECULE: UBIQUITIN/60S RIBOSOMAL PROTEIN L40 FUSION; . SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; . AUTHOR R.KITAHARA,S.YOKOYAMA,K.AKASAKA,RIKEN STRUCTURAL . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5038.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 102 0, 0.0 16,-0.8 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 155.2 -2.3 -7.2 10.3 2 2 A Q E +A 16 0A 43 14,-0.3 62,-3.4 12,-0.0 63,-0.3 -0.865 360.0 159.9-114.6 148.2 0.3 -4.4 10.0 3 3 A I E -A 15 0A 4 12,-0.7 12,-1.3 -2,-0.3 2,-0.3 -0.805 25.6-123.2-148.1-173.3 2.6 -3.6 7.1 4 4 A F E -b 66 0B 44 61,-0.7 63,-1.9 -2,-0.2 2,-0.3 -0.957 10.5-151.0-141.6 158.4 4.7 -0.8 5.6 5 5 A V E -b 67 0B 11 -2,-0.3 8,-0.3 61,-0.3 63,-0.2 -0.945 7.7-154.0-131.2 151.5 5.0 1.1 2.4 6 6 A K + 0 0 81 61,-2.7 2,-0.3 -2,-0.3 64,-0.1 -0.252 14.3 173.5-107.2-164.2 7.9 2.8 0.6 7 7 A T > - 0 0 40 62,-0.1 3,-3.0 -2,-0.1 64,-0.1 -0.937 54.8 -73.5 171.3 172.2 8.2 5.7 -1.8 8 8 A L T 3 S+ 0 0 118 1,-0.3 63,-0.0 -2,-0.3 -1,-0.0 0.671 133.0 54.8 -59.6 -15.6 10.5 8.0 -3.7 9 9 A T T 3 S- 0 0 103 2,-0.0 -1,-0.3 -3,-0.0 -3,-0.0 0.446 110.3-129.6 -95.5 -4.0 11.0 9.6 -0.2 10 10 A G < + 0 0 48 -3,-3.0 2,-0.2 1,-0.1 -2,-0.1 0.976 55.6 138.2 51.0 76.6 11.9 6.2 1.2 11 11 A K - 0 0 139 -6,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.661 44.9-124.6-133.7-171.9 9.6 6.2 4.2 12 12 A T - 0 0 74 -2,-0.2 2,-0.5 -8,-0.1 -6,-0.1 -0.995 11.3-163.6-146.2 137.0 7.4 3.8 6.1 13 13 A I - 0 0 53 -2,-0.3 2,-1.0 -8,-0.3 -10,-0.1 -0.986 17.8-138.4-125.5 124.3 3.7 3.8 7.0 14 14 A T + 0 0 95 -2,-0.5 -10,-0.2 -10,-0.1 2,-0.2 -0.712 33.8 174.8 -84.1 103.5 2.2 1.6 9.7 15 15 A L E -A 3 0A 11 -12,-1.3 -12,-0.7 -2,-1.0 2,-0.3 -0.525 32.2-132.9-103.0 172.0 -1.1 0.4 8.3 16 16 A E E +A 2 0A 146 -14,-0.2 -14,-0.3 -2,-0.2 2,-0.1 -0.630 48.6 141.3-127.7 72.4 -3.6 -2.1 9.6 17 17 A V - 0 0 2 -16,-0.8 8,-0.0 -2,-0.3 -2,-0.0 -0.426 44.6-114.3-103.3-179.9 -4.6 -4.4 6.8 18 18 A E > - 0 0 100 -2,-0.1 3,-1.4 4,-0.1 38,-0.4 -0.876 12.0-130.8-119.7 152.0 -5.2 -8.1 6.6 19 19 A P T 3 S+ 0 0 20 0, 0.0 38,-2.3 0, 0.0 39,-0.2 0.517 113.7 51.5 -75.0 -5.3 -3.4 -10.9 4.8 20 20 A S T 3 S+ 0 0 83 36,-0.2 2,-0.3 37,-0.1 35,-0.0 0.262 89.9 104.5-111.4 6.6 -6.7 -12.0 3.5 21 21 A D S < S- 0 0 22 -3,-1.4 35,-1.8 1,-0.1 36,-0.2 -0.641 75.9-110.8 -90.8 148.0 -7.6 -8.5 2.2 22 22 A T B > -C 55 0C 35 -2,-0.3 4,-2.1 33,-0.2 5,-0.3 -0.500 27.6-111.7 -78.2 145.9 -7.4 -7.7 -1.5 23 23 A I H > S+ 0 0 2 31,-1.8 4,-4.2 28,-0.5 5,-0.3 0.882 118.5 58.1 -39.0 -52.6 -4.8 -5.3 -2.8 24 24 A E H > S+ 0 0 92 30,-0.3 4,-0.8 2,-0.2 -1,-0.2 0.934 105.3 47.0 -42.8 -66.7 -7.5 -2.8 -3.5 25 25 A N H >> S+ 0 0 75 1,-0.3 4,-2.5 2,-0.3 3,-2.1 0.915 117.4 43.1 -41.2 -59.3 -8.8 -2.8 0.1 26 26 A V H 3X S+ 0 0 14 -4,-2.1 4,-1.3 1,-0.3 -1,-0.3 0.869 115.4 49.6 -56.1 -38.6 -5.2 -2.4 1.3 27 27 A K H 3< S+ 0 0 11 -4,-4.2 4,-0.5 -5,-0.3 -1,-0.3 0.471 110.7 54.1 -78.7 -2.2 -4.7 0.1 -1.5 28 28 A A H X S+ 0 0 53 -4,-2.5 4,-4.0 2,-0.2 3,-2.1 0.978 111.4 42.9 -52.0 -68.7 -6.9 2.2 3.4 30 30 A I H 3X>S+ 0 0 7 -4,-1.3 4,-2.5 1,-0.3 5,-0.8 0.927 110.6 55.0 -41.6 -64.5 -3.8 4.2 2.7 31 31 A Q H 34>S+ 0 0 12 -4,-0.5 5,-1.8 1,-0.3 4,-0.5 0.755 118.9 38.0 -42.1 -27.5 -5.5 6.2 -0.0 32 32 A D H <<5S+ 0 0 132 -3,-2.1 -2,-0.3 -4,-1.2 -1,-0.3 0.885 109.3 58.9 -90.4 -49.9 -7.9 7.0 2.8 33 33 A K H <5S+ 0 0 147 -4,-4.0 -2,-0.2 1,-0.2 -3,-0.2 0.922 126.9 19.7 -43.0 -58.7 -5.4 7.2 5.7 34 34 A E T <5S- 0 0 97 -4,-2.5 -1,-0.2 -5,-0.1 -3,-0.2 0.902 111.1-119.0 -79.5 -45.4 -3.7 10.0 3.9 35 35 A G T < + 0 0 61 -5,-0.8 -3,-0.2 -4,-0.5 -4,-0.2 0.806 64.0 130.2 104.6 49.5 -6.5 10.9 1.6 36 36 A I < - 0 0 55 -5,-1.8 -1,-0.3 -6,-0.2 -2,-0.1 -0.992 56.9-113.9-135.7 141.4 -5.2 10.4 -1.9 37 37 A P > - 0 0 71 0, 0.0 3,-1.2 0, 0.0 4,-0.5 -0.496 13.3-140.0 -74.9 140.5 -6.5 8.4 -4.9 38 38 A P T 3 S+ 0 0 33 0, 0.0 -10,-0.0 0, 0.0 5,-0.0 0.530 94.5 84.1 -75.0 -6.3 -4.7 5.3 -6.0 39 39 A D T 3 S+ 0 0 118 1,-0.2 3,-0.1 3,-0.0 34,-0.1 0.509 95.5 43.9 -72.7 -3.9 -5.4 6.4 -9.5 40 40 A Q S < S+ 0 0 58 -3,-1.2 33,-0.8 1,-0.3 2,-0.3 0.658 125.8 20.1-109.3 -28.8 -2.3 8.6 -9.1 41 41 A Q - 0 0 17 -4,-0.5 -1,-0.3 31,-0.2 2,-0.3 -0.977 64.3-157.2-143.0 153.7 -0.0 6.0 -7.4 42 42 A R - 0 0 93 -2,-0.3 28,-1.1 -3,-0.1 2,-0.3 -0.861 20.5-113.6-129.0 163.2 0.2 2.3 -7.1 43 43 A L - 0 0 7 7,-0.4 7,-1.5 -2,-0.3 2,-0.3 -0.679 26.9-160.9 -97.2 151.7 1.7 -0.2 -4.7 44 44 A I E +D 49 0D 32 -2,-0.3 24,-1.7 24,-0.2 2,-0.3 -0.931 11.0 177.2-131.5 154.7 4.5 -2.6 -5.5 45 45 A F E > S-D 48 0D 35 3,-1.4 3,-1.1 -2,-0.3 22,-0.1 -0.848 73.0 -2.3-162.3 120.7 5.9 -5.7 -4.0 46 46 A A T 3 S- 0 0 93 -2,-0.3 3,-0.1 1,-0.2 21,-0.1 0.514 124.7 -67.6 75.9 5.0 8.7 -8.1 -5.1 47 47 A G T 3 S+ 0 0 72 1,-0.4 2,-0.3 21,-0.0 -1,-0.2 0.645 110.1 118.8 87.0 18.2 9.0 -5.8 -8.1 48 48 A K E < S-D 45 0D 72 -3,-1.1 -3,-1.4 1,-0.0 2,-0.6 -0.756 75.0 -94.0-114.0 161.4 5.6 -6.8 -9.4 49 49 A Q E -D 44 0D 125 -2,-0.3 2,-0.6 -5,-0.2 -5,-0.2 -0.653 36.6-140.5 -78.5 117.4 2.5 -4.8 -10.1 50 50 A L + 0 0 4 -7,-1.5 -7,-0.4 -2,-0.6 2,-0.3 -0.702 32.6 168.5 -82.3 116.9 0.2 -5.0 -7.1 51 51 A E > - 0 0 65 -2,-0.6 3,-0.6 4,-0.1 -28,-0.5 -0.807 52.8-107.0-125.5 166.5 -3.4 -5.4 -8.3 52 52 A D T 3 S+ 0 0 70 -2,-0.3 -27,-0.1 1,-0.2 -29,-0.1 0.555 92.2 107.4 -67.8 -6.7 -6.7 -6.2 -6.7 53 53 A G T 3 S- 0 0 47 -31,-0.1 -1,-0.2 -30,-0.0 2,-0.1 0.878 92.0 -10.2 -33.9 -69.0 -6.3 -9.5 -8.5 54 54 A R S < S- 0 0 152 -3,-0.6 -31,-1.8 1,-0.1 -30,-0.3 -0.325 82.5 -91.6-118.0-159.7 -5.6 -11.4 -5.4 55 55 A T B > -C 22 0C 24 -33,-0.3 4,-1.5 -2,-0.1 -33,-0.2 -0.531 41.9 -91.9-112.6-179.9 -4.9 -10.6 -1.7 56 56 A L T 4>S+ 0 0 4 -35,-1.8 5,-4.0 -38,-0.4 4,-0.2 0.915 126.8 52.1 -57.8 -45.5 -1.7 -10.0 0.3 57 57 A S T >45S+ 0 0 56 -38,-2.3 3,-2.3 1,-0.3 -1,-0.2 0.943 108.6 48.6 -55.7 -52.4 -1.7 -13.7 1.2 58 58 A D T 345S+ 0 0 95 1,-0.3 -1,-0.3 -39,-0.2 -2,-0.2 0.775 115.2 47.2 -58.9 -26.4 -1.9 -14.7 -2.5 59 59 A Y T 3<5S- 0 0 31 -4,-1.5 -1,-0.3 -3,-0.2 -2,-0.2 0.376 115.9-118.7 -94.8 1.4 0.9 -12.1 -2.9 60 60 A N T < 5 + 0 0 135 -3,-2.3 2,-1.8 1,-0.2 -3,-0.3 0.623 63.6 152.1 69.6 12.5 2.8 -13.6 -0.0 61 61 A I < + 0 0 1 -5,-4.0 -1,-0.2 -6,-0.2 -2,-0.1 -0.591 20.7 172.6 -78.6 85.8 2.4 -10.1 1.5 62 62 A Q - 0 0 127 -2,-1.8 3,-0.3 1,-0.2 -44,-0.0 -0.020 40.6 -54.7 -81.5-170.1 2.5 -11.1 5.1 63 63 A K S S+ 0 0 82 1,-0.2 -60,-0.2 -60,-0.1 -1,-0.2 -0.105 121.0 28.3 -62.5 166.2 2.6 -8.9 8.2 64 64 A E S S+ 0 0 121 -62,-3.4 -61,-0.3 1,-0.1 -1,-0.2 0.906 91.1 163.2 43.2 54.9 5.3 -6.2 8.5 65 65 A S - 0 0 8 -63,-0.3 -61,-0.7 -3,-0.3 2,-0.3 -0.283 33.3-140.0 -92.8-178.8 5.5 -6.0 4.7 66 66 A T E -b 4 0B 54 -63,-0.2 -61,-0.3 -2,-0.1 2,-0.2 -0.847 13.3-167.1-151.0 108.4 7.1 -3.3 2.6 67 67 A L E -b 5 0B 6 -63,-1.9 -61,-2.7 -2,-0.3 2,-0.5 -0.620 19.4-128.0 -94.6 154.9 5.5 -2.0 -0.7 68 68 A H - 0 0 100 -24,-1.7 -24,-0.2 -2,-0.2 2,-0.2 -0.916 18.5-139.2-107.9 122.9 7.3 0.1 -3.2 69 69 A L - 0 0 38 -2,-0.5 2,-0.2 -26,-0.2 -26,-0.2 -0.543 17.1-134.6 -79.8 143.8 5.7 3.3 -4.3 70 70 A V - 0 0 45 -28,-1.1 2,-2.7 -2,-0.2 -62,-0.2 -0.578 28.2 -99.9 -96.2 161.0 5.8 4.2 -8.0 71 71 A L - 0 0 109 -2,-0.2 -30,-0.1 1,-0.2 -1,-0.1 -0.381 69.6 -96.5 -77.6 62.1 6.6 7.6 -9.5 72 72 A R - 0 0 181 -2,-2.7 -31,-0.2 -30,-0.1 -1,-0.2 0.162 69.9 -35.8 48.2-175.4 3.0 8.3 -10.0 73 73 A L S S- 0 0 71 -33,-0.8 -33,-0.1 -3,-0.1 -31,-0.0 0.179 102.9 -34.6 -59.6-172.2 1.4 7.6 -13.4 74 74 A R S S+ 0 0 223 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.057 101.0 80.2 -43.5 158.0 3.3 8.3 -16.7 75 75 A G 0 0 73 1,-0.2 0, 0.0 -3,-0.1 0, 0.0 0.745 360.0 360.0 100.0 93.9 5.7 11.2 -16.7 76 76 A G 0 0 125 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.834 360.0 360.0-153.3 360.0 9.1 10.7 -15.1