==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-DEC-03 1V86 . COMPND 2 MOLECULE: DNA SEGMENT, CHR 7, WAYNE STATE UNIVERSITY 128, . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7280.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 14.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 126 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-100.3 14.8 -12.5 -43.4 2 2 A S - 0 0 131 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.561 360.0-176.9 62.9 139.4 15.5 -11.7 -39.8 3 3 A S + 0 0 122 2,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.963 16.1 123.7-165.9 151.1 14.0 -8.6 -38.1 4 4 A G - 0 0 73 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.799 19.2-173.3 161.8 157.9 14.0 -6.7 -34.8 5 5 A S + 0 0 126 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.976 5.1 170.6-164.8 162.3 14.7 -3.4 -33.2 6 6 A S - 0 0 123 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.938 6.3-170.2-174.2 154.7 14.9 -1.7 -29.8 7 7 A G + 0 0 68 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.991 11.0 167.1-154.7 151.8 16.0 1.6 -28.2 8 8 A D + 0 0 148 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.572 29.9 117.5-170.7 98.4 16.6 3.0 -24.7 9 9 A A + 0 0 110 -2,-0.1 2,-0.1 2,-0.0 -2,-0.0 -0.921 16.1 119.8-167.0 140.3 18.3 6.3 -24.1 10 10 A G - 0 0 84 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.346 42.5-120.1-160.4-115.0 17.4 9.7 -22.6 11 11 A G + 0 0 65 -2,-0.1 2,-0.3 0, 0.0 -2,-0.0 -0.862 62.2 34.3 162.3 166.1 18.8 11.7 -19.7 12 12 A G + 0 0 79 -2,-0.2 -2,-0.1 1,-0.1 0, 0.0 -0.513 48.9 150.1 71.8-131.0 18.1 13.3 -16.4 13 13 A V - 0 0 132 -2,-0.3 -1,-0.1 2,-0.1 3,-0.1 0.881 23.7-167.1 63.4 105.4 15.5 11.4 -14.3 14 14 A G - 0 0 73 1,-0.2 2,-0.5 0, 0.0 -2,-0.0 0.886 59.3 -21.8 -83.9 -92.5 16.1 11.8 -10.6 15 15 A K - 0 0 209 3,-0.0 -1,-0.2 0, 0.0 3,-0.1 -0.973 63.8-156.5-130.9 116.6 14.1 9.4 -8.4 16 16 A E - 0 0 142 -2,-0.5 17,-0.1 1,-0.2 19,-0.1 -0.143 50.0 -43.0 -80.0 179.8 11.0 7.7 -9.7 17 17 A L - 0 0 60 15,-0.2 2,-0.3 1,-0.1 -1,-0.2 0.039 69.1-109.9 -40.3 151.8 8.1 6.3 -7.6 18 18 A V E -A 33 0A 13 15,-4.2 15,-2.2 -3,-0.1 2,-0.4 -0.714 26.0-117.7 -93.1 141.7 9.3 4.4 -4.6 19 19 A D E +A 32 0A 77 -2,-0.3 60,-2.6 13,-0.2 61,-0.7 -0.651 37.8 179.2 -80.9 128.6 8.9 0.6 -4.4 20 20 A L E -Ab 31 80A 3 11,-2.1 11,-1.9 -2,-0.4 2,-0.6 -0.955 26.0-129.6-131.4 149.6 6.6 -0.5 -1.6 21 21 A K E -Ab 30 81A 82 59,-1.4 2,-1.6 -2,-0.3 61,-1.3 -0.890 14.4-144.6-103.1 118.6 5.4 -3.9 -0.5 22 22 A I E -Ab 29 82A 5 7,-1.8 7,-0.5 -2,-0.6 2,-0.5 -0.648 22.5-168.3 -83.5 88.0 1.7 -4.3 -0.1 23 23 A I E +Ab 28 83A 18 59,-2.5 61,-1.1 -2,-1.6 2,-0.3 -0.678 21.8 148.2 -82.1 125.6 1.6 -6.7 2.9 24 24 A W E > S-Ab 27 84A 36 3,-0.8 2,-3.2 -2,-0.5 3,-1.0 -0.806 73.6 -35.6-161.9 113.9 -1.8 -8.1 3.5 25 25 A N T 3 S- 0 0 103 59,-0.7 -2,-0.1 -2,-0.3 61,-0.0 -0.391 128.6 -35.5 71.2 -69.0 -2.6 -11.5 5.0 26 26 A K T 3 S+ 0 0 166 -2,-3.2 2,-0.3 0, 0.0 -1,-0.2 0.078 107.1 117.8-176.8 37.9 0.3 -13.0 3.1 27 27 A T E < -A 24 0A 52 -3,-1.0 -3,-0.8 -5,-0.1 2,-0.4 -0.828 43.5-157.1-116.9 155.8 0.6 -11.2 -0.2 28 28 A K E +A 23 0A 135 -2,-0.3 2,-0.6 -5,-0.2 -5,-0.1 -0.882 12.8 178.7-136.7 102.0 3.4 -9.1 -1.7 29 29 A H E -A 22 0A 87 -7,-0.5 -7,-1.8 -2,-0.4 2,-0.9 -0.922 22.1-142.2-108.6 119.2 2.4 -6.6 -4.4 30 30 A D E +A 21 0A 120 -2,-0.6 2,-0.4 -9,-0.2 -9,-0.2 -0.710 30.0 173.2 -82.7 108.6 5.2 -4.4 -5.8 31 31 A V E -A 20 0A 28 -11,-1.9 -11,-2.1 -2,-0.9 2,-0.7 -0.943 26.0-142.4-120.3 140.3 3.7 -1.0 -6.4 32 32 A K E +A 19 0A 137 -2,-0.4 -13,-0.2 -13,-0.2 -15,-0.2 -0.899 31.4 163.8-105.4 111.4 5.5 2.1 -7.4 33 33 A V E -A 18 0A 13 -15,-2.2 -15,-4.2 -2,-0.7 2,-0.1 -0.919 38.5-104.0-127.2 152.8 4.2 5.2 -5.8 34 34 A P > - 0 0 49 0, 0.0 3,-1.6 0, 0.0 37,-0.2 -0.438 19.3-131.9 -75.1 147.6 5.6 8.8 -5.4 35 35 A L T 3 S+ 0 0 47 1,-0.3 37,-1.6 -2,-0.1 38,-0.3 0.633 104.6 75.5 -71.5 -13.7 7.0 9.8 -2.0 36 36 A D T 3 S+ 0 0 131 35,-0.1 2,-0.3 34,-0.1 -1,-0.3 0.515 70.7 117.5 -74.5 -4.6 4.9 12.9 -2.5 37 37 A S S < S- 0 0 1 -3,-1.6 34,-2.2 1,-0.1 35,-0.2 -0.499 70.1-123.4 -68.6 126.1 2.0 10.7 -1.6 38 38 A T B >> -E 70 0B 53 -2,-0.3 3,-1.6 32,-0.2 4,-1.6 -0.423 20.7-113.2 -71.4 144.5 0.3 11.9 1.6 39 39 A G H 3> S+ 0 0 0 30,-1.2 4,-0.5 27,-0.3 28,-0.2 0.728 122.7 54.7 -47.6 -23.3 0.0 9.4 4.5 40 40 A S H >> S+ 0 0 52 27,-0.6 4,-0.9 1,-0.2 3,-0.7 0.833 99.2 58.8 -79.9 -35.7 -3.7 9.7 3.7 41 41 A E H <> S+ 0 0 77 -3,-1.6 4,-2.7 1,-0.2 5,-0.3 0.868 89.4 73.7 -60.5 -38.5 -3.2 8.8 0.1 42 42 A L H 3X S+ 0 0 5 -4,-1.6 4,-3.0 1,-0.3 5,-0.3 0.882 92.4 56.0 -40.4 -50.4 -1.6 5.5 1.2 43 43 A K H X>S+ 0 0 0 -4,-3.0 4,-3.8 -3,-0.5 3,-2.4 0.870 115.0 54.6 -88.1 -44.9 -3.6 0.4 -0.9 47 47 A H H 3X5S+ 0 0 67 -4,-3.8 4,-1.7 -5,-0.3 -3,-0.2 0.822 98.9 65.1 -57.6 -32.1 -7.3 0.3 -1.4 48 48 A S H 3<5S+ 0 0 98 -4,-1.0 -1,-0.3 -5,-0.3 -2,-0.2 0.669 121.1 20.9 -64.5 -16.3 -6.6 0.8 -5.1 49 49 A I H <45S+ 0 0 67 -3,-2.4 -2,-0.2 3,-0.1 -1,-0.1 0.733 125.5 48.0-114.1 -60.2 -4.9 -2.6 -4.9 50 50 A T H <5S- 0 0 15 -4,-3.8 -3,-0.2 1,-0.1 -2,-0.2 0.828 89.1-148.7 -52.9 -34.3 -6.3 -4.4 -1.8 51 51 A G << + 0 0 31 -4,-1.7 39,-0.4 -5,-0.5 -1,-0.1 0.425 58.0 119.3 76.8 -1.4 -9.7 -3.5 -3.1 52 52 A L S S- 0 0 5 -6,-0.2 -1,-0.3 37,-0.1 -3,-0.1 -0.454 73.6 -87.0 -91.8 167.2 -10.8 -3.3 0.5 53 53 A P - 0 0 32 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.426 22.7-139.1 -74.9 149.1 -12.2 -0.3 2.4 54 54 A P S > S+ 0 0 55 0, 0.0 3,-2.5 0, 0.0 5,-0.1 0.825 101.5 65.5 -75.0 -33.9 -9.8 2.1 4.1 55 55 A A T 3 S+ 0 0 101 1,-0.3 -12,-0.0 3,-0.1 -3,-0.0 0.811 108.0 42.6 -56.8 -30.7 -12.0 2.4 7.1 56 56 A M T 3 S+ 0 0 135 -3,-0.2 -1,-0.3 29,-0.1 2,-0.3 -0.071 99.7 105.0-106.1 30.5 -11.2 -1.2 7.7 57 57 A Q < - 0 0 18 -3,-2.5 2,-0.4 27,-0.1 27,-0.1 -0.766 58.2-148.8-111.3 157.3 -7.5 -0.8 6.9 58 58 A K - 0 0 137 -2,-0.3 2,-1.0 27,-0.2 -3,-0.1 -0.830 12.3-172.3-129.1 92.0 -4.5 -0.7 9.1 59 59 A V + 0 0 17 -2,-0.4 6,-0.8 -5,-0.1 2,-0.3 -0.758 28.0 140.9 -88.4 103.8 -1.7 1.5 7.8 60 60 A M B +CD 64 83A 81 -2,-1.0 23,-1.0 23,-0.7 2,-0.5 -0.932 24.6 179.6-150.0 121.3 1.3 1.0 10.0 61 61 A Y S S- 0 0 39 2,-1.9 21,-0.1 -2,-0.3 -2,-0.0 -0.895 79.0 -46.3-127.0 100.9 4.9 0.7 9.1 62 62 A K S S+ 0 0 198 -2,-0.5 2,-0.2 3,-0.0 -1,-0.0 0.754 136.1 13.5 48.1 24.8 7.3 0.2 12.0 63 63 A G S S- 0 0 29 2,-0.0 -2,-1.9 0, 0.0 0, 0.0 -0.709 106.5 -57.5 152.8 157.5 5.3 3.0 13.5 64 64 A L B -C 60 0A 134 -2,-0.2 -4,-0.2 -4,-0.2 0, 0.0 -0.256 49.5-134.2 -57.8 143.0 2.0 4.9 13.2 65 65 A V - 0 0 15 -6,-0.8 2,-0.2 -26,-0.1 -6,-0.1 -0.917 15.2-141.9-108.0 114.3 1.7 6.7 9.9 66 66 A P - 0 0 57 0, 0.0 -27,-0.3 0, 0.0 3,-0.2 -0.485 6.3-155.2 -75.0 142.0 0.5 10.3 10.1 67 67 A E S S+ 0 0 106 1,-0.2 -27,-0.6 -28,-0.2 -26,-0.1 0.592 93.7 64.3 -89.6 -14.3 -1.9 11.6 7.5 68 68 A D S S+ 0 0 158 -29,-0.1 2,-0.4 -30,-0.1 -1,-0.2 0.592 105.3 52.7 -82.4 -12.6 -0.8 15.2 8.1 69 69 A K S S- 0 0 106 -3,-0.2 -30,-1.2 2,-0.0 2,-0.1 -0.958 83.8-126.3-126.6 144.1 2.6 14.1 6.8 70 70 A T B >> -E 38 0B 33 -2,-0.4 4,-3.7 -32,-0.3 3,-1.6 -0.299 35.5 -97.3 -81.6 169.1 3.5 12.4 3.6 71 71 A L H 3> S+ 0 0 0 -34,-2.2 4,-1.7 1,-0.3 5,-0.4 0.939 127.9 54.7 -49.4 -55.4 5.6 9.2 3.3 72 72 A R H 34 S+ 0 0 160 -37,-1.6 -1,-0.3 1,-0.3 -36,-0.1 0.716 117.5 39.7 -52.1 -20.8 8.7 11.2 2.6 73 73 A E H <4 S+ 0 0 120 -3,-1.6 -2,-0.3 -38,-0.3 -1,-0.3 0.803 110.4 54.4 -96.3 -39.6 7.8 12.9 5.8 74 74 A I H < S- 0 0 28 -4,-3.7 -2,-0.2 -8,-0.1 -3,-0.2 0.574 126.3-100.8 -70.7 -8.6 6.7 9.9 7.8 75 75 A K < + 0 0 173 -4,-1.7 2,-0.3 -5,-0.3 -3,-0.2 0.931 61.1 167.0 84.6 80.6 10.1 8.5 6.9 76 76 A V + 0 0 9 -5,-0.4 2,-0.3 -41,-0.1 -1,-0.2 -0.921 9.2 177.8-126.5 151.8 9.7 6.1 4.0 77 77 A T > - 0 0 87 -2,-0.3 3,-1.6 -58,-0.1 2,-0.8 -0.870 46.7 -64.3-143.4 174.6 12.2 4.5 1.6 78 78 A S T 3 S+ 0 0 93 -2,-0.3 -58,-0.2 1,-0.3 -60,-0.0 -0.530 125.4 26.2 -68.0 105.3 12.5 2.1 -1.2 79 79 A G T 3 S+ 0 0 48 -60,-2.6 2,-0.4 -2,-0.8 -1,-0.3 0.565 80.2 164.2 114.4 20.1 11.3 -1.2 0.3 80 80 A A E < -b 20 0A 0 -3,-1.6 -59,-1.4 -61,-0.7 -1,-0.2 -0.575 35.7-128.6 -72.8 122.2 9.1 0.2 3.0 81 81 A K E -b 21 0A 98 -2,-0.4 2,-0.4 -61,-0.2 -59,-0.1 -0.430 21.3-163.6 -71.8 145.0 6.9 -2.6 4.3 82 82 A I E -b 22 0A 1 -61,-1.3 -59,-2.5 -2,-0.1 2,-0.3 -0.929 2.1-158.7-136.8 109.5 3.2 -1.9 4.5 83 83 A M E -bD 23 60A 92 -23,-1.0 -23,-0.7 -2,-0.4 2,-0.3 -0.690 11.8-174.3 -90.1 139.4 0.9 -4.0 6.6 84 84 A V E -b 24 0A 15 -61,-1.1 -59,-0.7 -2,-0.3 2,-0.2 -0.926 10.7-145.5-131.7 155.6 -2.8 -4.2 5.9 85 85 A V + 0 0 66 -2,-0.3 2,-0.2 -61,-0.1 -27,-0.2 -0.690 44.7 80.4-115.6 169.5 -5.8 -5.8 7.6 86 86 A G - 0 0 24 -2,-0.2 3,-0.1 -29,-0.1 -2,-0.1 -0.732 35.4-161.4 127.9-176.5 -9.0 -7.3 6.4 87 87 A S S S+ 0 0 98 1,-0.2 2,-0.6 -2,-0.2 -63,-0.0 0.096 72.5 50.3-165.0 -64.0 -10.2 -10.6 4.9 88 88 A T S S- 0 0 127 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.863 82.9-122.6-100.2 120.5 -13.5 -10.3 3.1 89 89 A I - 0 0 113 -2,-0.6 2,-0.3 -3,-0.1 -37,-0.1 -0.022 31.7-174.2 -52.4 162.4 -13.8 -7.5 0.5 90 90 A S - 0 0 75 -39,-0.4 -1,-0.0 0, 0.0 -2,-0.0 -0.884 9.6-158.1-166.4 131.8 -16.6 -5.0 1.0 91 91 A G - 0 0 61 -2,-0.3 -39,-0.0 1,-0.1 4,-0.0 -0.673 26.8 -99.8-110.8 166.2 -18.0 -2.1 -1.0 92 92 A P - 0 0 119 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.103 18.1-139.5 -75.0 177.8 -20.0 0.9 -0.1 93 93 A S S S+ 0 0 134 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.830 92.7 6.7-103.4 -58.5 -23.8 1.4 -0.6 94 94 A S 0 0 134 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.912 360.0 360.0 -90.7 -58.5 -24.3 4.9 -1.8 95 95 A G 0 0 104 -4,-0.0 0, 0.0 0, 0.0 0, 0.0 0.424 360.0 360.0 123.7 360.0 -20.7 6.1 -2.3