==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-JAN-04 1V95 . COMPND 2 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 130 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9580.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 95 73.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 12 9.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 8.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-139.0 -1.3 -18.1 11.2 2 2 A S - 0 0 129 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.182 360.0 -38.9-161.5 -58.6 2.5 -18.2 11.8 3 3 A S - 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.356 64.6-137.4-147.7 -58.6 4.0 -14.7 12.0 4 4 A G - 0 0 75 -3,-0.0 0, 0.0 0, 0.0 0, 0.0 0.849 17.6-173.0 84.7 97.5 2.5 -12.3 9.6 5 5 A S - 0 0 127 123,-0.1 123,-0.0 124,-0.0 124,-0.0 0.945 57.7 -81.9 -82.7 -57.3 4.9 -10.0 7.9 6 6 A S - 0 0 105 3,-0.0 0, 0.0 0, 0.0 0, 0.0 0.023 53.4-158.4-175.5 -56.7 2.5 -7.6 6.1 7 7 A G - 0 0 49 2,-0.1 2,-0.2 54,-0.0 54,-0.1 -0.465 50.9 -11.4 90.2-163.9 1.2 -9.1 2.9 8 8 A P - 0 0 79 0, 0.0 2,-0.7 0, 0.0 52,-0.1 -0.510 63.0-137.6 -75.0 138.5 -0.2 -7.3 -0.1 9 9 A V > - 0 0 12 -2,-0.2 3,-0.5 47,-0.2 54,-0.4 -0.878 1.4-148.9-101.5 114.3 -1.1 -3.6 0.4 10 10 A D T 3 S+ 0 0 26 -2,-0.7 53,-1.4 1,-0.3 2,-0.3 0.875 95.4 7.0 -44.1 -45.0 -4.4 -2.6 -1.1 11 11 A C E 3 S-ab 38 63A 0 26,-2.8 28,-0.7 51,-0.1 2,-0.3 -0.834 79.2-162.3-146.4 101.6 -2.9 0.8 -1.7 12 12 A S E < -ab 39 64A 5 51,-2.2 53,-3.4 -3,-0.5 2,-0.5 -0.679 14.5-136.5 -87.8 137.8 0.8 1.3 -1.0 13 13 A V E -ab 40 65A 0 26,-3.0 28,-2.5 -2,-0.3 2,-0.6 -0.833 11.7-153.1 -97.6 126.7 2.1 4.8 -0.5 14 14 A I E +ab 41 66A 0 51,-3.9 53,-2.5 -2,-0.5 2,-0.4 -0.891 20.5 168.4-103.3 116.7 5.4 5.6 -2.2 15 15 A V E +ab 42 67A 0 26,-2.3 28,-1.5 -2,-0.6 53,-0.1 -0.884 11.8 172.9-132.1 99.9 7.4 8.4 -0.6 16 16 A V S S+ 0 0 48 51,-0.9 29,-0.4 -2,-0.4 30,-0.2 0.908 70.0 62.6 -70.0 -43.8 11.0 8.8 -1.8 17 17 A N S S- 0 0 57 50,-0.3 26,-0.3 27,-0.1 27,-0.1 -0.244 72.1-147.2 -76.9 169.5 11.4 11.9 0.3 18 18 A K S > S+ 0 0 76 24,-0.1 3,-0.6 25,-0.1 4,-0.2 0.785 89.5 71.2-104.1 -45.2 11.3 12.0 4.1 19 19 A Q G > S+ 0 0 146 1,-0.3 2,-1.2 2,-0.1 3,-0.7 0.822 93.3 63.0 -40.1 -39.1 9.8 15.5 4.6 20 20 A T G 3 S+ 0 0 0 1,-0.2 4,-0.4 2,-0.1 -1,-0.3 -0.279 70.1 112.4 -85.3 49.2 6.6 14.0 3.2 21 21 A K G <> S+ 0 0 94 -2,-1.2 4,-0.8 -3,-0.6 -1,-0.2 0.848 84.8 31.0 -86.8 -40.7 6.4 11.6 6.1 22 22 A D H <> S+ 0 0 125 -3,-0.7 4,-0.8 2,-0.2 -2,-0.1 0.940 119.2 51.8 -81.2 -54.4 3.4 13.1 7.7 23 23 A Y H >> S+ 0 0 39 -4,-0.4 4,-1.5 1,-0.3 3,-0.7 0.869 116.9 41.7 -48.9 -42.6 1.7 14.4 4.5 24 24 A A H 3> S+ 0 0 0 -4,-0.4 4,-2.0 1,-0.2 -1,-0.3 0.825 102.8 67.8 -74.5 -33.3 2.1 10.9 3.1 25 25 A E H 3X S+ 0 0 102 -4,-0.8 4,-0.8 2,-0.2 -1,-0.2 0.651 106.3 45.3 -60.2 -14.4 1.1 9.4 6.4 26 26 A S H <>S+ 0 0 0 -4,-1.2 5,-1.4 -5,-0.3 3,-0.5 0.763 109.7 55.7 -68.5 -25.5 -7.2 5.1 1.9 32 32 A R H ><5S+ 0 0 115 -4,-0.9 3,-2.0 1,-0.2 -2,-0.2 0.813 93.7 66.2 -75.1 -32.3 -7.5 3.1 5.2 33 33 A D T 3<5S+ 0 0 144 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.694 99.5 54.4 -61.6 -18.1 -10.5 5.1 6.2 34 34 A L T < 5S- 0 0 63 -3,-0.5 -1,-0.3 -4,-0.4 -2,-0.2 0.568 129.2-101.2 -90.0 -12.5 -12.2 3.4 3.3 35 35 A G T < 5S+ 0 0 48 -3,-2.0 2,-0.4 1,-0.3 -3,-0.2 0.697 79.1 135.5 97.3 26.5 -11.1 0.0 4.7 36 36 A M < - 0 0 3 -5,-1.4 -1,-0.3 -7,-0.1 2,-0.2 -0.916 59.9-114.5-112.1 133.5 -8.2 -0.5 2.4 37 37 A V + 0 0 78 -2,-0.4 -26,-2.8 -3,-0.1 2,-0.3 -0.463 42.6 176.6 -65.8 126.4 -4.8 -1.8 3.6 38 38 A V E -a 11 0A 12 -2,-0.2 2,-0.3 -28,-0.2 -26,-0.2 -0.972 9.6-175.3-134.8 148.5 -2.2 0.9 3.1 39 39 A D E -a 12 0A 67 -28,-0.7 -26,-3.0 -2,-0.3 2,-0.5 -0.873 22.6-121.7-137.1 168.3 1.5 1.2 3.9 40 40 A L E -a 13 0A 25 -2,-0.3 2,-0.6 -28,-0.2 -26,-0.2 -0.969 16.8-160.8-119.0 126.3 4.3 3.7 3.7 41 41 A I E -a 14 0A 36 -28,-2.5 -26,-2.3 -2,-0.5 2,-0.5 -0.922 7.6-163.7-109.9 112.1 7.4 3.1 1.7 42 42 A F E -a 15 0A 70 -2,-0.6 -26,-0.2 -28,-0.1 2,-0.2 -0.849 12.4-179.6 -99.5 124.2 10.4 5.3 2.7 43 43 A L > - 0 0 19 -28,-1.5 2,-1.5 -2,-0.5 3,-1.0 -0.500 7.2-179.5-118.6 59.6 13.3 5.5 0.3 44 44 A N T 3 S- 0 0 87 1,-0.3 -27,-0.1 -2,-0.2 3,-0.1 -0.457 82.1 -38.8 -64.3 92.3 15.5 7.9 2.2 45 45 A T T 3 S+ 0 0 126 -2,-1.5 2,-0.4 -29,-0.4 -1,-0.3 0.882 117.8 122.0 52.6 42.6 18.4 8.0 -0.3 46 46 A E S < S- 0 0 124 -3,-1.0 -1,-0.2 -30,-0.2 0, 0.0 -0.998 72.2 -39.3-139.6 133.0 17.8 4.3 -1.0 47 47 A V S S- 0 0 95 -2,-0.4 2,-0.2 -3,-0.1 -1,-0.1 -0.026 80.0 -87.3 48.7-156.8 17.0 2.5 -4.2 48 48 A S > - 0 0 62 1,-0.1 4,-0.9 -3,-0.1 5,-0.1 -0.771 31.3 -93.6-137.1-179.3 14.5 4.2 -6.5 49 49 A L H >> S+ 0 0 51 -2,-0.2 4,-2.4 2,-0.2 3,-2.2 0.978 121.6 52.1 -62.1 -58.8 10.8 4.6 -7.1 50 50 A S H 3> S+ 0 0 69 1,-0.3 4,-3.9 2,-0.3 5,-0.4 0.903 101.0 61.9 -42.2 -55.0 10.6 1.8 -9.7 51 51 A Q H 3> S+ 0 0 96 1,-0.3 4,-1.0 2,-0.2 -1,-0.3 0.816 111.6 40.0 -41.7 -37.0 12.4 -0.5 -7.3 52 52 A A H S+ 0 0 4 -4,-2.3 4,-1.1 -6,-0.3 5,-0.8 0.959 112.5 32.8 -62.5 -53.4 4.4 -3.1 -5.4 57 57 A S H ><5S+ 0 0 67 -4,-2.1 3,-1.4 2,-0.2 -2,-0.2 0.987 122.2 46.0 -66.5 -61.9 3.2 -5.3 -8.2 58 58 A R H 3<5S+ 0 0 177 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.821 113.1 53.8 -49.9 -34.1 5.1 -8.4 -7.3 59 59 A G H 3<5S- 0 0 38 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.798 120.5-112.8 -71.3 -30.3 4.0 -7.8 -3.8 60 60 A G T <<5 + 0 0 35 -3,-1.4 -3,-0.2 -4,-1.1 22,-0.1 -0.038 63.3 150.7 120.9 -27.9 0.4 -7.6 -4.9 61 61 A S < - 0 0 5 -5,-0.8 -1,-0.3 -6,-0.3 -51,-0.2 -0.135 24.9-171.2 -41.3 109.0 -0.3 -4.0 -4.3 62 62 A P S S+ 0 0 2 0, 0.0 20,-2.9 0, 0.0 21,-0.5 0.852 71.6 42.2 -75.0 -37.0 -2.9 -3.2 -6.9 63 63 A F E -bC 11 81A 3 -53,-1.4 -51,-2.2 -54,-0.4 2,-0.4 -0.935 67.0-170.9-116.6 135.9 -2.7 0.6 -6.2 64 64 A A E -bC 12 80A 0 16,-1.2 16,-2.3 -2,-0.4 2,-0.4 -0.989 10.3-151.2-129.1 123.5 0.4 2.6 -5.6 65 65 A I E -bC 13 79A 2 -53,-3.4 -51,-3.9 -2,-0.4 2,-0.5 -0.760 10.3-144.0 -95.1 137.9 0.4 6.2 -4.5 66 66 A V E -bC 14 78A 14 12,-0.5 12,-0.6 -2,-0.4 2,-0.3 -0.882 19.8-178.0-104.8 130.2 3.3 8.5 -5.5 67 67 A I E +b 15 0A 4 -53,-2.5 -51,-0.9 -2,-0.5 -50,-0.3 -0.926 11.9 143.6-127.0 151.3 4.5 11.1 -3.0 68 68 A T > - 0 0 40 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 -0.953 60.6 -84.6-175.8 161.6 7.1 13.8 -3.3 69 69 A Q H >> S+ 0 0 108 -2,-0.3 4,-1.4 1,-0.2 3,-1.1 0.907 127.9 42.9 -38.5 -65.0 8.0 17.3 -2.3 70 70 A Q H >>>S+ 0 0 126 1,-0.3 4,-1.6 2,-0.2 3,-1.2 0.945 109.4 55.8 -47.7 -60.8 6.2 18.8 -5.2 71 71 A H H 3>>S+ 0 0 31 1,-0.3 5,-1.5 2,-0.2 4,-1.3 0.793 103.7 60.0 -43.1 -31.7 3.2 16.5 -4.7 72 72 A Q H <<5S+ 0 0 70 -4,-2.2 -1,-0.3 -3,-1.1 -2,-0.2 0.935 107.4 42.3 -63.6 -48.8 3.2 18.0 -1.3 73 73 A I H <<5S+ 0 0 102 -4,-1.4 -2,-0.2 -3,-1.2 -3,-0.1 0.994 122.1 37.3 -60.7 -66.4 2.7 21.5 -2.5 74 74 A H H <5S- 0 0 129 -4,-1.6 -1,-0.2 2,-0.1 -2,-0.2 0.739 104.8-138.2 -57.9 -22.5 0.1 20.6 -5.2 75 75 A R T << + 0 0 181 -4,-1.3 19,-0.8 -5,-0.6 2,-0.4 0.896 60.5 122.6 63.4 42.3 -1.1 18.1 -2.6 76 76 A S E < - D 0 93A 13 -5,-1.5 -1,-0.2 17,-0.2 2,-0.2 -0.992 42.0-165.2-137.6 143.4 -1.7 15.5 -5.3 77 77 A C E - D 0 92A 0 15,-1.1 15,-1.1 -2,-0.4 2,-0.6 -0.662 25.6-110.5-118.9 175.0 -0.3 12.0 -5.7 78 78 A T E -C 66 0A 17 -12,-0.6 2,-0.8 -2,-0.2 -12,-0.5 -0.938 22.1-155.8-114.9 112.4 -0.2 9.6 -8.6 79 79 A V E -CD 65 89A 2 -2,-0.6 10,-1.8 10,-0.5 2,-0.6 -0.782 14.2-176.3 -89.9 110.6 -2.3 6.5 -8.4 80 80 A N E -CD 64 88A 24 -16,-2.3 -16,-1.2 -2,-0.8 8,-0.2 -0.937 14.9-145.2-112.7 114.2 -0.9 3.8 -10.6 81 81 A I E -C 63 0A 23 6,-1.7 -18,-0.2 -2,-0.6 -24,-0.1 -0.444 13.7-171.5 -75.7 149.6 -2.9 0.6 -10.8 82 82 A M + 0 0 69 -20,-2.9 2,-0.3 -2,-0.1 -19,-0.1 0.579 66.6 65.2-113.5 -21.2 -1.1 -2.7 -11.1 83 83 A F S S- 0 0 58 -21,-0.5 4,-0.2 4,-0.1 25,-0.0 -0.768 97.5 -0.0-106.7 151.9 -4.0 -5.0 -11.8 84 84 A G S S+ 0 0 58 -2,-0.3 3,-0.2 2,-0.1 24,-0.0 -0.066 115.1 4.3 67.0-173.0 -6.3 -5.0 -14.8 85 85 A T S S- 0 0 113 1,-0.2 2,-1.4 0, 0.0 -4,-0.1 0.039 90.5 -96.5 -38.8 146.5 -6.0 -2.6 -17.7 86 86 A P + 0 0 126 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.581 54.7 173.0 -75.1 92.6 -3.0 -0.3 -17.5 87 87 A Q - 0 0 94 -2,-1.4 -6,-1.7 -4,-0.2 2,-0.7 -0.914 11.6-173.8-108.2 114.7 -4.5 2.8 -16.0 88 88 A E E -D 80 0A 125 -2,-0.6 2,-0.8 -8,-0.2 -8,-0.2 -0.905 7.5-161.2-112.0 105.3 -2.1 5.5 -15.1 89 89 A H E -D 79 0A 46 -10,-1.8 -10,-0.5 -2,-0.7 2,-0.5 -0.772 10.3-166.9 -88.9 111.3 -3.7 8.4 -13.3 90 90 A R E + 0 0 176 -2,-0.8 -12,-0.1 1,-0.2 -13,-0.0 -0.856 62.0 2.5-102.9 132.0 -1.5 11.5 -13.5 91 91 A N E S+ 0 0 120 -2,-0.5 -1,-0.2 1,-0.2 -13,-0.1 0.948 79.3 169.8 58.9 94.5 -2.1 14.5 -11.3 92 92 A M E -D 77 0A 21 -15,-1.1 -15,-1.1 -3,-0.2 2,-0.2 -0.998 32.8-121.4-141.5 134.9 -5.1 13.6 -9.1 93 93 A P E > -D 76 0A 64 0, 0.0 4,-3.4 0, 0.0 3,-0.3 -0.499 27.8-118.4 -75.0 140.0 -6.6 15.4 -6.1 94 94 A Q H > S+ 0 0 41 -19,-0.8 4,-4.3 1,-0.3 5,-0.3 0.900 116.0 53.0 -38.2 -63.0 -6.8 13.4 -2.8 95 95 A A H > S+ 0 0 79 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.895 115.1 42.0 -39.9 -55.1 -10.6 13.6 -2.8 96 96 A D H >> S+ 0 0 77 -3,-0.3 4,-3.8 2,-0.2 3,-1.6 0.973 113.8 50.5 -57.8 -59.0 -10.6 12.2 -6.3 97 97 A A H 3X S+ 0 0 0 -4,-3.4 4,-2.7 1,-0.3 5,-0.3 0.887 108.6 54.1 -45.5 -46.2 -7.9 9.6 -5.6 98 98 A M H 3X S+ 0 0 24 -4,-4.3 4,-2.3 -5,-0.3 -1,-0.3 0.808 114.5 41.2 -59.2 -31.3 -10.0 8.6 -2.6 99 99 A V H