==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 18-MAR-04 1VD4 . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.OKUDA,A.TANAKA,Y.ARAI,M.SATOH,H.OKAMURA,A.NAGADOI, . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5394.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 40.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 113 A R 0 0 300 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.6 1.2 -19.3 -17.9 2 114 A I - 0 0 149 1,-0.0 2,-0.6 2,-0.0 0, 0.0 -0.632 360.0-116.6 -94.2 154.4 -0.3 -16.3 -16.0 3 115 A E + 0 0 139 -2,-0.2 -1,-0.0 1,-0.2 0, 0.0 -0.777 28.4 179.1 -92.3 121.6 1.7 -13.2 -15.0 4 116 A T + 0 0 81 -2,-0.6 3,-0.3 2,-0.1 2,-0.3 0.907 64.0 71.8 -86.8 -46.3 2.0 -12.7 -11.2 5 117 A D + 0 0 97 1,-0.2 3,-0.0 2,-0.0 0, 0.0 -0.518 54.0 116.0 -71.9 131.3 4.1 -9.5 -11.1 6 118 A E S S- 0 0 160 -2,-0.3 -1,-0.2 3,-0.0 -2,-0.1 0.319 83.6 -10.9-163.2 -36.1 2.2 -6.5 -12.3 7 119 A R S S+ 0 0 208 -3,-0.3 2,-1.0 0, 0.0 -2,-0.0 0.241 72.2 122.6-138.9 -92.0 1.9 -3.9 -9.5 8 120 A D S S+ 0 0 114 -3,-0.0 2,-0.2 50,-0.0 50,-0.0 -0.334 86.8 27.6 56.8 -96.5 2.7 -4.6 -5.8 9 121 A S - 0 0 60 -2,-1.0 4,-0.1 1,-0.1 -3,-0.0 -0.577 64.7-169.0 -92.4 158.6 5.3 -1.8 -5.3 10 122 A T - 0 0 121 2,-0.4 -1,-0.1 -2,-0.2 3,-0.1 0.759 53.7 -73.3-110.3 -70.7 5.3 1.5 -7.3 11 123 A N S S+ 0 0 121 1,-0.4 2,-0.1 0, 0.0 3,-0.1 0.307 98.6 5.1-161.5 -44.7 8.5 3.5 -6.8 12 124 A R S S+ 0 0 112 1,-0.1 -1,-0.4 39,-0.1 -2,-0.4 -0.279 70.4 101.2-128.3-144.3 8.7 5.2 -3.4 13 125 A A S S+ 0 0 10 12,-0.2 13,-0.9 -2,-0.1 14,-0.2 0.811 81.1 81.4 65.5 26.7 6.6 5.3 -0.2 14 126 A S E +A 25 0A 15 11,-0.3 38,-4.0 -3,-0.1 11,-0.3 -0.429 55.7 160.3-160.8 75.2 9.2 2.9 1.4 15 127 A F E -AB 24 51A 4 9,-1.9 9,-3.0 36,-0.3 2,-0.3 -0.608 18.5-158.8 -99.3 162.7 12.3 4.6 2.7 16 128 A K E -AB 23 50A 68 34,-3.0 34,-3.3 7,-0.3 7,-0.3 -0.990 18.4-118.3-140.9 149.2 14.8 3.2 5.2 17 129 A C - 0 0 2 5,-1.6 32,-0.2 -2,-0.3 4,-0.2 -0.735 9.9-154.5 -91.2 134.8 17.4 4.7 7.5 18 130 A P S S+ 0 0 92 0, 0.0 -1,-0.1 0, 0.0 31,-0.1 0.596 90.0 44.7 -81.0 -12.9 21.1 3.7 7.0 19 131 A V S S+ 0 0 93 29,-0.1 27,-0.0 1,-0.1 -2,-0.0 0.880 127.6 18.0 -96.2 -72.6 22.0 4.4 10.6 20 132 A C S S- 0 0 39 1,-0.1 -3,-0.1 25,-0.0 -1,-0.1 0.318 98.1-127.4 -84.2 15.1 19.4 3.0 13.0 21 133 A S + 0 0 75 -4,-0.2 -1,-0.1 -5,-0.1 28,-0.0 0.787 59.4 148.0 47.3 29.2 18.1 0.7 10.2 22 134 A S - 0 0 32 -6,-0.1 -5,-1.6 1,-0.0 2,-0.3 0.011 33.2-144.6 -76.7-166.2 14.6 2.1 10.8 23 135 A T E -A 16 0A 64 -7,-0.3 2,-0.3 -3,-0.1 -7,-0.3 -0.998 16.0-174.5-159.6 158.4 12.1 2.4 8.0 24 136 A F E -A 15 0A 8 -9,-3.0 -9,-1.9 -2,-0.3 2,-0.1 -0.978 12.3-143.0-151.2 163.5 9.2 4.6 6.8 25 137 A T E >> -A 14 0A 51 -2,-0.3 4,-0.7 -11,-0.3 3,-0.5 -0.409 47.1 -78.2-115.3-165.6 6.6 4.8 4.0 26 138 A D H >> S+ 0 0 59 -13,-0.9 3,-1.8 1,-0.2 4,-1.5 0.951 127.7 60.3 -64.6 -45.6 5.1 7.6 2.0 27 139 A L H 34 S+ 0 0 107 1,-0.3 -1,-0.2 2,-0.2 4,-0.1 0.822 110.2 44.8 -52.3 -25.9 2.7 8.7 4.8 28 140 A E H <> S+ 0 0 47 -3,-0.5 4,-2.6 1,-0.1 3,-0.5 0.614 100.9 69.9 -92.8 -13.0 6.0 9.3 6.7 29 141 A A H > -C 39 0B 45 5,-2.3 4,-2.9 1,-0.1 5,-1.2 -0.989 22.4-155.3-143.3 132.6 13.0 18.6 5.1 35 147 A P T 45S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.865 92.9 68.7 -72.7 -37.8 13.6 21.7 2.9 36 148 A M T 45S+ 0 0 145 1,-0.2 -2,-0.0 3,-0.1 0, 0.0 0.801 125.5 12.5 -53.6 -24.8 16.9 22.6 4.5 37 149 A T T 45S- 0 0 64 -3,-0.5 -1,-0.2 2,-0.2 3,-0.1 0.581 97.0-127.5-124.7 -23.3 18.2 19.4 2.7 38 150 A G T <5S+ 0 0 42 -4,-2.9 2,-0.3 1,-0.3 -5,-0.1 0.873 77.5 85.8 77.0 35.3 15.4 18.5 0.3 39 151 A T E - 0 0 32 -38,-4.0 3,-0.6 1,-0.1 -1,-0.1 -0.871 17.2-171.5-104.6 114.8 14.3 0.7 0.4 53 165 A E T 3 S+ 0 0 189 -2,-0.7 3,-0.2 1,-0.2 -1,-0.1 0.535 87.1 50.2 -80.6 -2.7 13.8 -1.7 -2.6 54 166 A S T 3 S+ 0 0 112 1,-0.1 -1,-0.2 -40,-0.1 4,-0.0 -0.309 78.9 95.2-129.3 52.7 13.5 -4.6 -0.2 55 167 A A < + 0 0 45 -3,-0.6 -1,-0.1 -41,-0.1 -2,-0.1 0.114 67.2 83.8-126.8 21.4 10.9 -3.5 2.4 56 168 A M S S- 0 0 87 -3,-0.2 2,-0.9 -42,-0.1 -47,-0.0 -0.885 88.3 -95.9-125.0 158.2 7.7 -5.0 1.0 57 169 A P + 0 0 115 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.574 55.7 167.0 -72.9 103.8 6.1 -8.5 1.2 58 170 A K - 0 0 139 -2,-0.9 -4,-0.0 -4,-0.0 -50,-0.0 -0.124 56.1 -76.7-101.2-157.8 7.3 -10.3 -2.0 59 171 A K - 0 0 102 -2,-0.1 -1,-0.0 1,-0.1 0, 0.0 0.718 48.2-159.8 -77.5 -17.9 7.2 -14.0 -2.9 60 172 A D - 0 0 126 2,-0.1 -1,-0.1 1,-0.0 0, 0.0 0.859 67.2 -56.9 42.0 37.3 10.1 -14.7 -0.6 61 173 A A 0 0 91 1,-0.1 -3,-0.0 0, 0.0 -1,-0.0 0.816 360.0 360.0 63.1 109.7 10.6 -17.9 -2.7 62 174 A R 0 0 291 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.639 360.0 360.0 -77.7 360.0 7.4 -20.0 -2.7