==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 04-JAN-12 3VD6 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR D.A.JACQUES,N.RIPIN,L.E.WILKINSON-WHITE,J.M.GUSS,J.M.MATTHEW . 96 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8024.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 201 C A 0 0 154 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 53.5 20.7 19.4 26.1 2 202 C R + 0 0 110 8,-0.2 2,-0.3 2,-0.0 0, 0.0 -0.531 360.0 176.1 -79.2 141.8 20.6 15.6 26.0 3 203 C E - 0 0 112 -2,-0.2 2,-0.5 22,-0.0 7,-0.2 -0.998 37.3-109.6-150.9 137.5 23.5 13.7 27.6 4 204 C C > - 0 0 1 5,-2.8 4,-1.7 -2,-0.3 20,-0.2 -0.567 25.1-148.9 -67.1 118.3 24.5 10.1 28.3 5 205 C V T 4 S+ 0 0 91 18,-2.4 -1,-0.2 -2,-0.5 19,-0.1 0.700 92.8 44.2 -65.7 -19.1 24.2 9.7 32.1 6 206 C N T 4 S+ 0 0 35 17,-0.3 -1,-0.1 3,-0.1 18,-0.1 0.947 130.9 11.4 -85.6 -66.1 27.0 7.1 32.0 7 207 C C T 4 S- 0 0 40 2,-0.1 -2,-0.1 33,-0.0 17,-0.1 0.581 92.7-121.9 -95.8 -13.7 29.8 8.4 29.7 8 208 C G < + 0 0 32 -4,-1.7 -3,-0.1 1,-0.3 16,-0.0 0.470 52.8 158.9 85.9 3.0 28.6 12.0 29.1 9 209 C A - 0 0 31 1,-0.1 -5,-2.8 -6,-0.1 -1,-0.3 -0.309 26.8-170.3 -60.1 140.1 28.4 11.8 25.4 10 210 C T S S+ 0 0 101 -7,-0.2 2,-0.4 1,-0.1 -8,-0.2 0.389 70.9 55.7-109.5 -4.9 26.1 14.4 23.7 11 211 C A + 0 0 80 3,-0.0 -1,-0.1 -7,-0.0 -7,-0.1 -0.993 59.3 148.2-132.0 140.6 26.2 12.8 20.3 12 212 C T - 0 0 34 -2,-0.4 3,-0.2 13,-0.1 13,-0.0 -0.967 52.2-118.8-164.8 147.7 25.2 9.2 19.3 13 213 C P S S+ 0 0 115 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.726 105.9 14.8 -65.9 -19.4 23.7 7.4 16.3 14 214 C L S S- 0 0 78 41,-0.0 2,-0.2 -3,-0.0 12,-0.1 -0.820 72.6-141.6-158.4 115.9 20.8 6.3 18.5 15 215 C W + 0 0 60 -2,-0.3 2,-0.3 -3,-0.2 10,-0.2 -0.553 28.0 179.9 -72.5 138.0 19.7 7.5 21.9 16 216 C R E -A 24 0A 90 8,-2.9 8,-3.2 -2,-0.2 2,-0.3 -0.836 17.3-135.3-130.9 171.1 18.4 4.8 24.3 17 217 C R E -A 23 0A 74 -2,-0.3 6,-0.2 6,-0.2 2,-0.1 -0.934 12.4-130.9-126.3 151.9 17.1 4.6 27.9 18 218 C D > - 0 0 40 4,-2.2 3,-2.0 -2,-0.3 11,-0.0 -0.331 50.5 -77.6 -87.1-178.9 17.8 2.3 30.8 19 219 C R T 3 S+ 0 0 232 1,-0.3 78,-0.1 2,-0.1 -1,-0.0 0.767 134.0 47.9 -51.1 -34.0 15.1 0.6 32.9 20 220 C T T 3 S- 0 0 74 2,-0.1 -1,-0.3 76,-0.1 3,-0.1 0.629 120.7-106.1 -83.7 -15.0 14.4 3.8 34.8 21 221 C G < + 0 0 15 -3,-2.0 2,-0.3 1,-0.3 -2,-0.1 0.609 68.2 150.5 93.9 15.9 14.2 5.9 31.6 22 222 C H - 0 0 92 1,-0.1 -4,-2.2 -18,-0.0 -1,-0.3 -0.661 51.7-108.0 -78.6 136.0 17.6 7.6 32.2 23 223 C Y E +A 17 0A 54 -2,-0.3 -18,-2.4 -6,-0.2 2,-0.3 -0.417 41.5 174.3 -74.5 138.1 19.2 8.5 28.8 24 224 C L E -A 16 0A 7 -8,-3.2 -8,-2.9 -20,-0.2 -20,-0.1 -0.990 32.1-111.6-138.1 145.5 22.2 6.6 27.5 25 225 C C > - 0 0 6 -2,-0.3 4,-2.3 -10,-0.2 5,-0.2 -0.198 43.0 -98.3 -65.6 168.0 24.1 6.7 24.2 26 226 C N H > S+ 0 0 36 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.918 122.9 49.9 -55.7 -46.9 23.8 3.7 21.9 27 227 C A H > S+ 0 0 39 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.931 115.1 40.8 -58.9 -52.0 27.1 2.3 23.1 28 228 C C H > S+ 0 0 2 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.783 114.3 54.5 -70.1 -29.3 26.4 2.6 26.9 29 229 C G H X S+ 0 0 11 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.923 110.6 43.6 -70.0 -47.7 22.8 1.4 26.4 30 230 C L H X S+ 0 0 85 -4,-2.5 4,-2.1 -5,-0.2 -2,-0.2 0.886 114.0 52.4 -63.5 -40.6 23.8 -1.8 24.5 31 231 C Y H X S+ 0 0 67 -4,-2.0 4,-3.0 -5,-0.2 5,-0.4 0.936 110.5 45.5 -62.6 -49.1 26.6 -2.5 27.0 32 232 C H H X S+ 0 0 64 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.896 113.1 50.3 -63.8 -42.6 24.4 -2.2 30.1 33 233 C K H < S+ 0 0 188 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.907 118.5 39.4 -59.6 -44.2 21.6 -4.3 28.6 34 234 C M H < S+ 0 0 161 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.888 129.2 26.1 -73.1 -43.8 24.1 -7.0 27.7 35 235 C N H < S- 0 0 87 -4,-3.0 -3,-0.2 2,-0.3 -2,-0.2 0.703 90.8-128.6-101.3 -25.3 26.4 -7.0 30.8 36 236 C G S < S+ 0 0 60 -4,-2.2 2,-0.3 -5,-0.4 -4,-0.1 0.648 80.4 78.3 80.0 15.6 24.2 -5.7 33.6 37 237 C Q S S- 0 0 117 -6,-0.3 -1,-0.3 -5,-0.1 -2,-0.3 -0.944 90.7 -75.9-145.1 168.6 26.8 -3.1 34.6 38 238 C N - 0 0 107 -2,-0.3 -9,-0.1 1,-0.1 -10,-0.0 -0.326 50.2-103.9 -67.9 142.9 27.9 0.3 33.5 39 239 C R - 0 0 90 -11,-0.2 -1,-0.1 1,-0.1 -11,-0.1 -0.525 45.1-115.4 -64.2 126.6 30.1 0.7 30.3 40 240 C P 0 0 90 0, 0.0 -1,-0.1 0, 0.0 -33,-0.0 -0.360 360.0 360.0 -71.8 148.6 33.7 1.4 31.6 41 241 C L 0 0 165 -2,-0.1 -34,-0.0 -35,-0.1 -2,-0.0 0.788 360.0 360.0-111.5 360.0 35.3 4.7 30.8 42 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 43 256 C T 0 0 119 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 122.7 23.0 10.1 2.0 44 257 C Q - 0 0 105 20,-0.1 7,-0.2 8,-0.0 6,-0.1 -0.961 360.0 -95.9-132.1 150.9 19.6 11.0 0.6 45 258 C C > - 0 0 0 5,-2.7 4,-1.0 -2,-0.3 20,-0.2 -0.358 21.8-145.1 -65.7 135.4 16.2 9.4 0.5 46 259 C T T 4 S+ 0 0 62 18,-2.1 19,-0.1 2,-0.1 -1,-0.1 0.854 96.8 39.3 -67.5 -34.9 15.4 7.5 -2.6 47 260 C N T 4 S+ 0 0 35 17,-0.2 -1,-0.1 1,-0.1 35,-0.1 0.963 132.9 14.7 -81.9 -58.1 11.7 8.4 -2.5 48 261 C C T 4 S- 0 0 3 2,-0.1 -2,-0.1 33,-0.1 -1,-0.1 0.435 90.5-128.1-104.7 -2.8 11.5 12.1 -1.3 49 262 C Q < + 0 0 93 -4,-1.0 -3,-0.1 1,-0.2 2,-0.1 0.591 51.9 155.1 67.1 14.8 15.2 13.1 -1.8 50 263 C T - 0 0 14 1,-0.1 -5,-2.7 -6,-0.1 -1,-0.2 -0.418 35.3-160.2 -71.0 148.0 15.6 14.5 1.8 51 264 C T + 0 0 96 -7,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.299 70.0 73.1-106.6 5.2 19.1 14.6 3.2 52 265 C T + 0 0 88 3,-0.0 2,-0.3 -7,-0.0 -1,-0.1 -0.979 48.9 129.5-132.2 123.9 17.9 14.8 6.9 53 266 C T - 0 0 45 -2,-0.4 3,-0.2 13,-0.1 36,-0.0 -0.951 51.4-130.3-160.7 153.6 16.4 12.2 9.1 54 267 C T S S+ 0 0 124 -2,-0.3 2,-0.3 1,-0.3 12,-0.0 0.547 99.9 26.4 -81.3 -8.2 17.0 10.8 12.7 55 268 C L S S- 0 0 72 -41,-0.0 12,-0.4 2,-0.0 2,-0.3 -0.819 71.9-148.1-159.9 112.8 16.9 7.2 11.4 56 269 C W - 0 0 80 -2,-0.3 2,-0.2 -3,-0.2 10,-0.2 -0.616 20.4-179.7 -80.5 140.2 17.7 5.8 7.9 57 270 C R E -B 65 0B 93 8,-3.0 8,-2.7 -2,-0.3 2,-0.3 -0.686 21.3-118.4-124.3-179.3 15.9 2.8 6.7 58 271 C R E -B 64 0B 174 6,-0.3 2,-0.1 -2,-0.2 8,-0.0 -0.941 15.5-133.0-125.0 148.3 16.0 0.8 3.5 59 272 C N > - 0 0 50 4,-2.7 3,-1.6 -2,-0.3 6,-0.1 -0.278 45.2 -84.0 -85.0-179.8 13.4 0.0 0.8 60 273 C A T 3 S+ 0 0 101 1,-0.3 -1,-0.0 2,-0.1 -2,-0.0 0.799 130.8 51.0 -56.9 -34.0 12.7 -3.4 -0.8 61 274 C S T 3 S- 0 0 92 2,-0.1 -1,-0.3 1,-0.0 -3,-0.0 0.575 120.8-107.3 -81.2 -11.4 15.6 -3.0 -3.2 62 275 C G S < S+ 0 0 36 -3,-1.6 -2,-0.1 1,-0.3 -1,-0.0 0.541 74.7 133.6 96.5 9.5 18.0 -2.1 -0.4 63 276 C D - 0 0 80 1,-0.1 -4,-2.7 -18,-0.0 -1,-0.3 -0.630 63.2 -92.6 -88.6 152.2 18.4 1.6 -1.2 64 277 C P E +B 58 0B 32 0, 0.0 -18,-2.1 0, 0.0 2,-0.3 -0.381 42.9 178.1 -69.7 137.8 18.2 4.2 1.6 65 278 C V E -B 57 0B 8 -8,-2.7 -8,-3.0 -20,-0.2 -20,-0.1 -0.965 31.9-106.4-130.6 151.8 14.9 5.8 2.5 66 279 C C > - 0 0 5 -2,-0.3 4,-2.7 -10,-0.2 5,-0.2 -0.272 38.4-101.9 -70.3 163.0 14.2 8.4 5.3 67 280 C N H > S+ 0 0 41 -12,-0.4 4,-2.7 1,-0.2 5,-0.3 0.916 121.2 49.8 -51.2 -49.7 12.3 7.3 8.4 68 281 C A H > S+ 0 0 38 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.933 113.9 43.5 -56.3 -53.1 9.1 8.9 7.2 69 282 C C H > S+ 0 0 4 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.881 114.9 49.8 -63.3 -41.5 9.2 7.3 3.8 70 283 C G H X S+ 0 0 14 -4,-2.7 4,-1.9 2,-0.2 -2,-0.2 0.927 114.4 43.3 -63.0 -48.4 10.2 3.9 5.1 71 284 C L H X S+ 0 0 80 -4,-2.7 4,-2.1 -5,-0.2 -2,-0.2 0.899 112.4 53.7 -65.2 -42.2 7.5 3.8 7.7 72 285 C Y H X S+ 0 0 62 -4,-2.6 4,-2.8 -5,-0.3 6,-0.3 0.924 109.9 47.3 -58.7 -47.4 4.8 5.1 5.3 73 286 C F H X S+ 0 0 72 -4,-2.2 4,-2.7 1,-0.2 -1,-0.2 0.890 109.6 53.0 -61.7 -42.2 5.6 2.4 2.8 74 287 C K H < S+ 0 0 165 -4,-1.9 -1,-0.2 2,-0.2 -2,-0.2 0.909 115.9 40.7 -60.2 -42.1 5.5 -0.4 5.4 75 288 C L H < S+ 0 0 135 -4,-2.1 -2,-0.2 1,-0.1 -1,-0.2 0.947 130.5 23.9 -70.3 -51.4 2.1 0.8 6.5 76 289 C H H < S- 0 0 100 -4,-2.8 -3,-0.2 2,-0.3 -2,-0.2 0.566 89.7-133.0 -97.0 -11.7 0.4 1.5 3.2 77 290 C Q S < S+ 0 0 127 -4,-2.7 2,-0.3 -5,-0.3 -4,-0.2 0.775 79.3 93.8 55.8 30.6 2.5 -0.7 0.8 78 291 C V S S- 0 0 91 -6,-0.3 -2,-0.3 -5,-0.2 -1,-0.2 -0.982 86.6 -91.2-145.9 149.3 2.8 2.3 -1.5 79 292 C N - 0 0 101 -2,-0.3 -9,-0.1 1,-0.1 -10,-0.0 -0.265 45.1-103.0 -63.8 146.9 5.5 5.0 -1.8 80 293 C R - 0 0 27 -11,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.554 41.1-119.0 -69.3 125.2 5.1 8.2 0.3 81 294 C P > - 0 0 55 0, 0.0 3,-1.8 0, 0.0 4,-0.4 -0.395 14.4-122.2 -69.6 148.2 3.9 11.0 -2.0 82 295 C L G > S+ 0 0 122 1,-0.3 3,-1.1 2,-0.2 -2,-0.1 0.756 109.2 66.0 -59.9 -27.7 6.2 14.1 -2.4 83 296 C T G 3 S+ 0 0 137 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.669 89.1 66.6 -69.6 -18.9 3.4 16.4 -1.1 84 297 C M G < S+ 0 0 75 -3,-1.8 2,-0.4 2,-0.1 -1,-0.2 0.714 72.3 114.9 -69.9 -23.1 3.6 14.7 2.4 85 298 C R < - 0 0 115 -3,-1.1 2,-0.3 -4,-0.4 -3,-0.0 -0.341 56.1-154.0 -61.1 109.4 7.1 16.1 2.9 86 299 C K - 0 0 139 -2,-0.4 2,-0.1 2,-0.1 4,-0.1 -0.667 13.6-123.7 -83.2 137.2 6.9 18.6 5.9 87 300 C D S S+ 0 0 147 -2,-0.3 -1,-0.1 2,-0.1 0, 0.0 -0.432 72.7 20.6 -73.6 154.3 9.5 21.4 6.1 88 301 C G S S- 0 0 63 -2,-0.1 2,-0.5 1,-0.0 -2,-0.1 -0.000 94.9 -68.2 76.7 176.0 11.6 21.7 9.2 89 302 C I - 0 0 137 -36,-0.0 2,-0.4 2,-0.0 -2,-0.1 -0.915 42.2-151.8-110.3 127.1 12.4 19.2 11.9 90 303 C Q - 0 0 113 -2,-0.5 2,-0.3 -4,-0.1 -2,-0.0 -0.786 12.0-171.0 -99.2 141.3 9.7 17.9 14.3 91 304 C T - 0 0 132 -2,-0.4 2,-0.4 2,-0.0 -2,-0.0 -0.906 5.3-156.8-128.0 157.6 10.5 16.7 17.8 92 305 C R - 0 0 232 -2,-0.3 2,-1.1 2,-0.0 -2,-0.0 -0.999 20.7-126.8-139.2 137.5 8.4 14.9 20.4 93 306 C N - 0 0 157 -2,-0.4 2,-0.3 0, 0.0 -2,-0.0 -0.720 32.0-158.8 -83.9 97.9 8.6 14.6 24.2 94 307 C R - 0 0 195 -2,-1.1 2,-0.1 1,-0.1 -2,-0.0 -0.603 11.0-131.3 -80.6 138.1 8.5 10.9 24.9 95 308 C K - 0 0 179 -2,-0.3 -1,-0.1 1,-0.2 -74,-0.0 -0.371 31.3 -81.2 -87.5 166.7 7.4 9.7 28.3 96 309 C A 0 0 72 1,-0.2 -1,-0.2 -2,-0.1 -75,-0.1 -0.031 360.0 360.0 -64.6 167.7 9.2 7.2 30.6 97 310 C S 0 0 163 -78,-0.1 -1,-0.2 -77,-0.0 -76,-0.1 -0.391 360.0 360.0 67.5 360.0 8.9 3.4 30.4