==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-04 1VEH . COMPND 2 MOLECULE: NIFU-LIKE PROTEIN HIRIP5; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR W.OHASHI,H.HIROTA,T.YAMAZAKI,S.YOKOYAMA,RIKEN STRUCTURAL . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7096.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 29.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.2 -16.6 -2.0 9.6 2 2 A S - 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.103 360.0 -12.7-178.8 -41.2 -14.7 -2.6 12.8 3 3 A S S S- 0 0 117 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.439 83.1-128.2-141.8 -55.7 -14.6 0.5 14.9 4 4 A G + 0 0 68 1,-0.2 2,-0.1 0, 0.0 0, 0.0 0.604 38.8 154.6 95.6 113.5 -15.8 3.5 12.8 5 5 A S - 0 0 106 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 -0.501 29.9-147.7-172.1 93.3 -13.9 6.8 12.5 6 6 A S S S+ 0 0 140 -2,-0.1 2,-0.1 2,-0.0 0, 0.0 -0.550 70.7 29.8 -70.3 117.8 -14.2 9.1 9.6 7 7 A G S S- 0 0 63 -2,-0.5 2,-0.2 2,-0.0 0, 0.0 -0.071 79.5-104.5 110.8 148.9 -10.9 10.8 9.0 8 8 A S - 0 0 57 -2,-0.1 2,-2.4 1,-0.1 3,-0.3 -0.463 51.8 -73.9-100.0 174.1 -7.2 9.9 9.6 9 9 A E S S- 0 0 199 1,-0.2 -1,-0.1 -2,-0.2 -2,-0.0 -0.454 100.7 -51.5 -70.0 78.6 -4.8 11.0 12.2 10 10 A E S S- 0 0 143 -2,-2.4 -1,-0.2 1,-0.1 2,-0.2 0.932 71.9-129.7 49.9 95.9 -4.3 14.5 10.8 11 11 A D - 0 0 98 -3,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.476 25.3-160.9 -74.9 144.5 -3.4 13.9 7.1 12 12 A D > - 0 0 95 -2,-0.2 4,-2.3 1,-0.0 5,-0.1 -0.484 35.6 -96.7-114.4-174.5 -0.4 15.7 5.8 13 13 A E H > S+ 0 0 171 2,-0.2 4,-0.7 1,-0.2 -2,-0.0 0.742 123.6 53.6 -75.8 -24.9 0.9 16.6 2.3 14 14 A V H > S+ 0 0 31 2,-0.2 4,-2.1 3,-0.1 -1,-0.2 0.915 112.9 41.5 -74.5 -45.8 3.0 13.5 2.3 15 15 A V H > S+ 0 0 19 2,-0.2 4,-3.5 1,-0.2 5,-0.3 0.975 108.0 58.3 -64.7 -57.4 0.2 11.2 3.1 16 16 A A H X S+ 0 0 36 -4,-2.3 4,-1.6 1,-0.2 -1,-0.2 0.809 109.5 50.4 -41.3 -34.6 -2.3 12.9 0.7 17 17 A M H X S+ 0 0 90 -4,-0.7 4,-2.0 2,-0.2 5,-0.3 0.979 111.1 43.0 -69.4 -59.8 0.3 12.0 -1.9 18 18 A I H X S+ 0 0 0 -4,-2.1 4,-2.0 1,-0.2 5,-0.2 0.916 110.4 59.0 -52.0 -48.0 0.8 8.4 -1.1 19 19 A K H X S+ 0 0 77 -4,-3.5 4,-1.9 2,-0.2 -1,-0.2 0.918 106.2 48.7 -46.5 -52.7 -3.0 8.1 -0.7 20 20 A E H >X S+ 0 0 110 -4,-1.6 4,-4.9 -5,-0.3 3,-1.6 0.970 111.9 45.1 -51.7 -65.3 -3.3 9.3 -4.3 21 21 A L H 3X S+ 0 0 21 -4,-2.0 4,-0.6 1,-0.3 -1,-0.3 0.728 115.1 53.2 -52.2 -21.3 -0.8 6.9 -5.7 22 22 A L H 3<>S+ 0 0 10 -4,-2.0 5,-3.1 -5,-0.3 4,-0.4 0.774 116.4 36.0 -83.9 -29.9 -2.6 4.4 -3.5 23 23 A D H <<5S+ 0 0 78 -4,-1.9 -2,-0.2 -3,-1.6 -3,-0.2 0.803 104.8 75.4 -89.8 -35.8 -5.9 5.3 -5.1 24 24 A T H <5S- 0 0 75 -4,-4.9 -3,-0.1 -5,-0.2 -2,-0.1 0.896 130.4 -36.7 -37.6 -89.3 -4.6 5.8 -8.6 25 25 A R T <5S+ 0 0 197 -4,-0.6 -1,-0.2 3,-0.1 -2,-0.1 -0.198 127.4 76.8-137.4 41.6 -4.0 2.3 -9.7 26 26 A I T >5S+ 0 0 9 -4,-0.4 4,-2.3 -6,-0.2 -3,-0.2 0.733 101.9 28.6-114.0 -56.4 -2.9 0.6 -6.5 27 27 A R H > S+ 0 0 51 2,-0.1 4,-1.2 3,-0.1 -2,-0.2 0.840 101.4 55.3 -96.7 -46.5 -5.8 -2.4 -8.9 30 30 A V H >X S+ 0 0 25 -4,-2.3 4,-2.6 1,-0.2 3,-1.6 0.943 103.2 57.3 -51.3 -54.8 -5.2 -4.9 -6.2 31 31 A Q H 3< S+ 0 0 79 -4,-1.5 -1,-0.2 1,-0.3 4,-0.2 0.889 100.1 58.2 -42.1 -51.4 -8.8 -5.8 -6.0 32 32 A E H 34 S+ 0 0 174 -4,-0.4 -1,-0.3 1,-0.2 -2,-0.2 0.856 116.4 35.8 -48.3 -40.0 -8.7 -6.7 -9.7 33 33 A D H << S- 0 0 100 -3,-1.6 -2,-0.2 -4,-1.2 -1,-0.2 0.977 132.9 -76.3 -77.4 -65.4 -6.0 -9.2 -8.8 34 34 A G S < S+ 0 0 34 -4,-2.6 2,-0.2 1,-0.2 -3,-0.2 0.036 90.2 56.7 157.6 83.9 -7.3 -10.3 -5.4 35 35 A G - 0 0 8 -4,-0.2 2,-0.5 18,-0.1 -1,-0.2 -0.802 64.6-111.4 157.2 163.3 -6.9 -8.2 -2.3 36 36 A D - 0 0 98 16,-0.2 2,-0.6 -2,-0.2 -9,-0.1 -0.951 23.5-156.4-126.5 110.2 -7.7 -4.9 -0.7 37 37 A V + 0 0 12 -2,-0.5 2,-0.5 -10,-0.3 14,-0.2 -0.763 15.4 176.9 -88.9 121.6 -4.8 -2.6 0.1 38 38 A I - 0 0 41 -2,-0.6 12,-1.6 48,-0.1 2,-0.9 -0.934 22.9-144.2-130.2 107.5 -5.6 -0.1 2.8 39 39 A Y E +A 49 0A 30 -2,-0.5 2,-0.5 10,-0.2 10,-0.3 -0.597 31.0 164.0 -73.8 104.2 -2.8 2.3 3.9 40 40 A R E + 0 0 165 8,-3.4 -1,-0.1 -2,-0.9 -2,-0.1 -0.832 54.6 2.8-127.4 92.2 -3.3 2.7 7.6 41 41 A G E - 0 0 35 -2,-0.5 7,-3.2 1,-0.1 2,-0.4 0.151 58.9-147.4 107.3 137.2 -0.3 4.2 9.3 42 42 A F E +A 47 0A 50 5,-0.2 2,-0.3 -3,-0.1 5,-0.2 -0.934 28.4 148.2-142.9 115.2 3.0 5.4 8.1 43 43 A E E > +A 46 0A 110 3,-1.5 3,-0.6 -2,-0.4 0, 0.0 -0.987 68.1 3.0-145.7 152.0 6.3 5.2 9.9 44 44 A D T 3 S- 0 0 124 1,-0.3 2,-0.7 -2,-0.3 3,-0.1 0.766 124.0 -71.5 43.0 27.4 10.0 4.9 9.1 45 45 A G T 3 S+ 0 0 5 1,-0.2 2,-0.5 35,-0.1 -1,-0.3 -0.179 106.7 128.2 85.3 -41.7 8.6 5.0 5.5 46 46 A I E < -A 43 0A 49 -2,-0.7 -3,-1.5 -3,-0.6 2,-0.6 -0.293 56.6-144.6 -51.5 100.6 7.1 1.6 6.0 47 47 A V E -Ab 42 83A 0 35,-2.0 37,-1.1 -2,-0.5 2,-0.7 -0.625 11.6-128.6 -76.0 118.0 3.6 2.3 4.9 48 48 A R E + b 0 84A 102 -7,-3.2 -8,-3.4 -2,-0.6 2,-0.4 -0.571 37.8 173.9 -71.3 110.2 1.2 0.2 7.0 49 49 A L E -Ab 39 85A 11 35,-1.9 37,-3.0 -2,-0.7 2,-0.7 -0.949 30.3-149.6-122.5 141.6 -1.1 -1.5 4.5 50 50 A K + 0 0 86 -12,-1.6 2,-0.2 -2,-0.4 -14,-0.2 -0.623 41.6 150.9-108.5 69.9 -3.7 -4.1 5.2 51 51 A L - 0 0 47 -2,-0.7 2,-0.3 33,-0.2 -14,-0.2 -0.634 21.8-174.7 -99.5 159.1 -3.6 -6.1 2.0 52 52 A Q + 0 0 114 -2,-0.2 2,-0.4 36,-0.1 -16,-0.2 -0.883 7.0 169.1-158.5 121.7 -4.4 -9.7 1.5 53 53 A G + 0 0 46 -2,-0.3 -18,-0.1 -18,-0.1 -19,-0.1 -0.998 15.1 177.1-139.4 132.9 -4.1 -11.9 -1.5 54 54 A S + 0 0 113 -2,-0.4 2,-1.1 -20,-0.2 -1,-0.1 0.835 67.5 82.7 -97.0 -46.1 -4.4 -15.7 -1.9 55 55 A C + 0 0 89 1,-0.2 -1,-0.1 -21,-0.1 0, 0.0 -0.493 54.4 180.0 -65.3 99.9 -4.0 -16.0 -5.7 56 56 A T - 0 0 77 -2,-1.1 6,-0.3 -3,-0.0 -1,-0.2 0.734 15.9-159.9 -73.9 -23.8 -0.3 -15.9 -6.0 57 57 A S - 0 0 70 -3,-0.1 4,-0.3 4,-0.1 5,-0.2 0.900 65.2 -43.7 40.3 57.2 -0.6 -16.3 -9.7 58 58 A C > - 0 0 86 3,-0.1 4,-1.1 2,-0.1 5,-0.0 0.420 62.7-110.4 66.7 147.8 3.0 -17.4 -9.9 59 59 A P H >>S+ 0 0 79 0, 0.0 4,-3.8 0, 0.0 5,-0.5 0.938 112.3 61.8 -75.0 -50.5 5.8 -15.7 -8.0 60 60 A S H >5S+ 0 0 88 1,-0.3 4,-1.1 2,-0.2 5,-0.1 0.888 106.7 46.9 -39.8 -54.0 7.5 -14.2 -10.9 61 61 A S H >>S+ 0 0 52 -4,-0.3 4,-4.5 2,-0.2 5,-0.5 0.901 115.7 46.1 -56.7 -44.0 4.4 -12.2 -11.7 62 62 A I H <>S+ 0 0 44 -4,-1.1 5,-2.2 -6,-0.3 6,-0.5 0.971 115.1 43.9 -62.8 -56.4 4.2 -11.2 -8.0 63 63 A I H <5S+ 0 0 112 -4,-3.8 -1,-0.2 3,-0.2 -2,-0.2 0.629 120.0 48.5 -63.7 -12.2 7.9 -10.3 -7.7 64 64 A T H < S+ 0 0 33 -6,-0.5 4,-2.0 1,-0.2 -1,-0.2 0.849 103.0 51.2 -47.8 -39.9 7.2 -3.8 -8.9 69 69 A I H X S+ 0 0 49 -4,-3.4 4,-2.0 -3,-0.4 -1,-0.2 0.982 100.9 58.0 -62.4 -59.9 4.5 -1.8 -7.2 70 70 A Q H X S+ 0 0 69 -4,-1.6 4,-1.6 1,-0.3 -1,-0.2 0.801 109.4 49.4 -39.1 -36.0 6.4 -1.4 -3.9 71 71 A N H X S+ 0 0 102 -4,-1.7 4,-4.2 2,-0.2 -1,-0.3 0.951 102.8 58.2 -70.3 -51.8 9.0 0.2 -6.1 72 72 A M H X S+ 0 0 57 -4,-2.0 4,-3.0 2,-0.2 5,-0.3 0.882 106.5 50.6 -43.4 -49.4 6.5 2.5 -7.8 73 73 A L H X S+ 0 0 4 -4,-2.0 4,-4.3 2,-0.2 -1,-0.2 0.980 115.6 39.1 -53.6 -66.5 5.6 4.0 -4.4 74 74 A Q H < S+ 0 0 36 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.915 113.9 57.2 -49.7 -50.5 9.2 4.6 -3.4 75 75 A F H < S+ 0 0 143 -4,-4.2 -1,-0.2 1,-0.2 -2,-0.2 0.920 120.3 28.1 -46.3 -55.5 10.1 5.7 -6.9 76 76 A Y H < S+ 0 0 139 -4,-3.0 -2,-0.2 -5,-0.2 -1,-0.2 0.962 128.6 42.8 -72.2 -55.4 7.4 8.4 -6.8 77 77 A I < - 0 0 5 -4,-4.3 -1,-0.2 -5,-0.3 -63,-0.0 -0.857 63.1-171.0 -99.4 109.3 7.3 9.0 -3.1 78 78 A P S S+ 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.474 79.6 72.8 -75.0 -2.0 10.9 9.1 -1.7 79 79 A E S S+ 0 0 109 -6,-0.2 -5,-0.1 -65,-0.1 -33,-0.1 0.989 81.4 68.5 -73.7 -68.7 9.3 9.1 1.8 80 80 A V - 0 0 3 1,-0.1 -34,-0.2 -7,-0.1 -35,-0.1 -0.029 55.0-178.1 -48.9 157.0 8.1 5.6 2.1 81 81 A E - 0 0 139 1,-0.5 2,-0.2 -37,-0.0 -36,-0.1 0.612 59.2 -8.9-126.7 -45.8 10.7 2.9 2.4 82 82 A G - 0 0 13 -38,-0.1 -35,-2.0 -9,-0.0 -1,-0.5 -0.791 62.3-115.9-144.3-174.5 9.0 -0.4 2.5 83 83 A V E -b 47 0A 66 -2,-0.2 2,-0.3 -37,-0.2 -35,-0.2 -0.891 21.2-172.4-130.4 160.0 5.6 -2.0 2.9 84 84 A E E -b 48 0A 58 -37,-1.1 -35,-1.9 -2,-0.3 2,-1.1 -0.988 29.4-119.9-151.7 153.6 3.9 -4.3 5.4 85 85 A Q E -b 49 0A 80 -2,-0.3 -35,-0.3 -37,-0.1 2,-0.1 -0.756 33.4-159.8 -99.2 87.9 0.7 -6.3 5.8 86 86 A V + 0 0 31 -37,-3.0 -48,-0.1 -2,-1.1 -2,-0.0 -0.443 67.6 16.5 -68.5 137.4 -1.0 -4.7 8.9 87 87 A S S S+ 0 0 99 1,-0.1 -1,-0.1 -2,-0.1 0, 0.0 0.941 87.6 140.9 62.5 96.1 -3.5 -7.0 10.5 88 88 A G - 0 0 42 2,-0.1 2,-0.5 -36,-0.0 -1,-0.1 -0.941 56.7 -69.1-155.5 173.1 -3.0 -10.5 9.3 89 89 A P S S+ 0 0 103 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.596 71.2 121.7 -75.0 121.5 -3.0 -14.2 10.3 90 90 A S + 0 0 119 -2,-0.5 -2,-0.1 1,-0.0 -3,-0.0 -0.590 12.2 149.8 177.6 115.3 -0.1 -15.0 12.6 91 91 A S 0 0 136 1,-0.3 -1,-0.0 -2,-0.2 0, 0.0 0.730 360.0 360.0-114.8 -60.1 0.1 -16.4 16.1 92 92 A G 0 0 113 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 -0.829 360.0 360.0 -98.8 360.0 3.3 -18.3 16.5