==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 26-APR-99 1VFY . COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-3-PHOSPHATE BINDING FYVE . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.H.HURLEY,S.MISRA . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4730.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 53.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 169 A D 0 0 155 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -75.2 9.3 17.9 47.2 2 170 A W - 0 0 123 21,-0.0 2,-0.2 23,-0.0 27,-0.2 -0.529 360.0-169.2 -75.9 144.1 9.5 15.0 44.7 3 171 A I - 0 0 88 25,-2.4 2,-0.3 -2,-0.2 25,-0.0 -0.576 9.8-137.4-113.7-178.6 6.8 14.9 42.0 4 172 A D + 0 0 105 -2,-0.2 2,-0.3 26,-0.1 26,-0.1 -0.985 24.7 159.0-142.1 154.8 6.1 12.1 39.6 5 173 A S - 0 0 52 -2,-0.3 4,-0.1 24,-0.0 10,-0.0 -0.965 44.5-117.7-161.7 166.5 5.3 11.7 35.9 6 174 A D S S+ 0 0 90 -2,-0.3 9,-2.5 2,-0.1 2,-0.3 0.439 93.2 44.1 -90.9 0.1 5.4 9.1 33.2 7 175 A A B S-A 14 0A 16 7,-0.3 7,-0.2 23,-0.1 23,-0.2 -0.967 93.6 -86.3-145.0 156.9 7.9 10.9 31.0 8 176 A C > - 0 0 2 5,-2.3 4,-2.1 -2,-0.3 23,-0.3 -0.389 32.0-137.9 -61.2 133.2 11.2 12.9 31.2 9 177 A M T 4 S+ 0 0 100 21,-2.5 -1,-0.1 2,-0.2 22,-0.1 0.739 100.0 42.7 -68.6 -19.6 10.6 16.5 32.0 10 178 A I T 4 S+ 0 0 102 20,-0.2 -1,-0.2 3,-0.1 21,-0.1 0.934 131.1 16.1 -90.7 -54.6 13.2 17.6 29.5 11 179 A C T 4 S- 0 0 39 2,-0.1 -2,-0.2 1,-0.0 3,-0.1 0.524 87.4-133.5-100.9 -5.9 12.7 15.4 26.5 12 180 A S < + 0 0 93 -4,-2.1 2,-0.2 1,-0.2 -3,-0.1 0.559 50.2 151.0 65.9 12.5 9.2 14.0 27.1 13 181 A K - 0 0 118 1,-0.1 -5,-2.3 -6,-0.1 2,-0.3 -0.528 49.9-114.0 -74.7 137.8 10.2 10.4 26.3 14 182 A K B -A 7 0A 142 -7,-0.2 -7,-0.3 -2,-0.2 -1,-0.1 -0.558 28.6-116.5 -77.9 135.8 8.0 8.0 28.2 15 183 A F + 0 0 24 -9,-2.5 2,-0.3 -2,-0.3 5,-0.2 -0.396 45.4 150.2 -71.6 148.7 9.7 5.8 30.8 16 184 A S B > -B 19 0B 67 3,-1.6 3,-1.8 -2,-0.1 5,-0.0 -0.901 65.4 -78.5-158.3 179.9 9.9 2.1 30.4 17 185 A L T 3 S+ 0 0 137 1,-0.3 3,-0.3 -2,-0.3 -2,-0.0 0.789 132.6 51.7 -59.7 -25.4 12.2 -0.7 31.4 18 186 A L T 3 S+ 0 0 171 1,-0.3 -1,-0.3 2,-0.0 2,-0.1 0.423 123.1 27.5 -89.7 -3.6 14.4 0.3 28.5 19 187 A N B < S-B 16 0B 48 -3,-1.8 -3,-1.6 13,-0.0 -1,-0.3 -0.595 93.5-153.5-154.1 83.9 14.5 4.0 29.6 20 188 A R - 0 0 158 -3,-0.3 13,-0.3 -5,-0.2 2,-0.2 -0.174 13.9-107.7 -72.5 155.4 14.1 4.1 33.3 21 189 A K + 0 0 86 11,-0.1 2,-0.3 9,-0.1 11,-0.2 -0.528 37.2 178.0 -76.5 140.5 12.6 6.8 35.5 22 190 A H E -C 31 0C 42 9,-1.1 9,-3.1 -2,-0.2 2,-0.3 -0.998 19.5-137.7-143.8 143.7 14.9 8.8 37.8 23 191 A H E -C 30 0C 27 -2,-0.3 2,-0.6 7,-0.2 7,-0.2 -0.778 18.6-125.7 -97.1 145.9 14.4 11.7 40.2 24 192 A C > - 0 0 0 5,-2.4 4,-1.9 -2,-0.3 29,-0.3 -0.771 16.6-150.4 -81.9 123.2 16.6 14.7 40.5 25 193 A R T 4 S+ 0 0 85 27,-2.9 28,-0.2 -2,-0.6 -1,-0.1 0.678 92.2 49.9 -71.8 -15.7 17.5 14.9 44.3 26 194 A S T 4 S+ 0 0 52 26,-0.3 -1,-0.2 25,-0.1 27,-0.1 0.935 126.9 15.9 -86.5 -53.0 17.8 18.7 44.1 27 195 A C T 4 S- 0 0 65 2,-0.1 -2,-0.2 -25,-0.0 26,-0.1 0.593 92.6-126.7-101.8 -11.4 14.5 19.8 42.4 28 196 A G < + 0 0 1 -4,-1.9 -25,-2.4 1,-0.2 -3,-0.1 0.429 62.4 134.0 84.3 -4.3 12.4 16.6 42.7 29 197 A G - 0 0 4 -27,-0.2 -5,-2.4 -6,-0.1 2,-0.4 -0.146 56.2-112.5 -71.3 172.4 11.6 16.4 39.0 30 198 A V E +C 23 0C 0 -7,-0.2 -21,-2.5 -23,-0.2 2,-0.3 -0.925 39.5 167.7-113.5 137.8 11.7 13.2 36.9 31 199 A F E -C 22 0C 9 -9,-3.1 -9,-1.1 -2,-0.4 2,-0.1 -0.952 34.0-112.8-145.0 154.4 14.2 12.7 34.2 32 200 A C > - 0 0 1 -2,-0.3 3,-0.8 -11,-0.2 4,-0.1 -0.393 44.9 -99.4 -79.8 170.6 15.6 10.0 31.9 33 201 A Q G > S+ 0 0 87 -13,-0.3 3,-1.8 1,-0.2 -1,-0.1 0.897 121.8 60.1 -58.0 -42.0 19.3 8.9 32.3 34 202 A E G 3 S+ 0 0 124 1,-0.3 3,-0.4 2,-0.2 -1,-0.2 0.822 111.3 40.8 -59.7 -29.7 20.4 11.1 29.4 35 203 A H G < S+ 0 0 28 -3,-0.8 20,-1.3 1,-0.2 -1,-0.3 0.207 122.0 38.9-105.0 16.0 19.1 14.2 31.3 36 204 A S S < S+ 0 0 1 -3,-1.8 -1,-0.2 18,-0.2 -2,-0.2 -0.114 70.5 128.9-152.4 44.2 20.3 13.2 34.8 37 205 A S + 0 0 66 -3,-0.4 2,-0.2 15,-0.1 17,-0.1 0.596 57.0 75.1 -82.4 -9.6 23.7 11.7 34.2 38 206 A N E -D 53 0D 51 15,-0.6 15,-2.3 13,-0.0 2,-0.4 -0.661 61.5-159.4-102.3 158.1 25.6 13.8 36.7 39 207 A S E +D 52 0D 60 13,-0.2 13,-0.3 -2,-0.2 -2,-0.0 -0.996 10.7 176.7-137.2 144.5 25.6 13.5 40.5 40 208 A I E -D 51 0D 6 11,-2.4 11,-2.3 -2,-0.4 9,-0.2 -0.940 34.2-103.8-143.3 156.8 26.5 16.1 43.1 41 209 A P E - 0 0 30 0, 0.0 7,-0.2 0, 0.0 3,-0.1 -0.472 24.6-150.6 -75.5 160.2 26.5 16.3 46.9 42 210 A L E > > +D 47 0D 20 5,-1.8 3,-2.3 7,-0.3 5,-2.2 -0.672 18.8 175.2-131.3 76.6 23.6 18.4 48.4 43 211 A P G > 5S+ 0 0 55 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 0.793 76.0 64.8 -53.7 -31.6 25.1 19.8 51.7 44 212 A D G 3 5S+ 0 0 168 1,-0.3 -2,-0.0 2,-0.1 0, 0.0 0.648 107.3 43.0 -68.9 -13.9 22.0 21.9 52.3 45 213 A L G < 5S- 0 0 107 -3,-2.3 -1,-0.3 2,-0.2 3,-0.1 0.215 123.5-106.1-108.4 6.4 20.1 18.6 52.7 46 214 A G T < 5S+ 0 0 51 -3,-1.8 2,-0.6 1,-0.2 -2,-0.1 0.737 76.7 138.8 74.9 23.8 22.9 17.1 54.7 47 215 A I E < +D 42 0D 46 -5,-2.2 -5,-1.8 1,-0.1 -1,-0.2 -0.908 22.7 170.1-109.0 116.7 24.0 14.9 51.8 48 216 A Y E + 0 0 179 -2,-0.6 -1,-0.1 -7,-0.2 -2,-0.0 0.054 56.5 71.4-116.0 19.3 27.8 14.6 51.3 49 217 A E E S- 0 0 129 -9,-0.2 -7,-0.3 -7,-0.0 2,-0.2 -0.927 98.6 -85.0-124.1 156.5 28.1 11.9 48.7 50 218 A P E - 0 0 91 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.418 49.0-177.6 -67.1 132.4 27.1 12.5 45.0 51 219 A V E -D 40 0D 21 -11,-2.3 -11,-2.4 -2,-0.2 -25,-0.1 -0.935 36.0 -82.6-128.2 152.7 23.4 11.9 44.3 52 220 A R E +D 39 0D 53 -2,-0.3 -27,-2.9 -13,-0.3 2,-0.3 -0.251 49.5 172.6 -59.7 134.2 21.6 12.2 41.0 53 221 A V E -D 38 0D 0 -15,-2.3 -15,-0.6 -29,-0.3 -29,-0.1 -0.957 32.0-108.0-137.0 156.0 20.6 15.6 39.6 54 222 A C > - 0 0 5 -2,-0.3 4,-2.4 -18,-0.1 -18,-0.2 -0.275 41.6-100.6 -73.3 167.2 19.1 16.9 36.4 55 223 A D H > S+ 0 0 60 -20,-1.3 4,-2.2 1,-0.2 5,-0.2 0.841 121.0 53.7 -60.0 -36.0 21.3 19.0 34.0 56 224 A S H > S+ 0 0 74 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.931 111.5 43.8 -64.9 -47.4 19.8 22.3 35.2 57 225 A C H > S+ 0 0 9 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.863 112.0 55.0 -67.5 -33.4 20.6 21.6 38.9 58 226 A F H X S+ 0 0 52 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.925 107.9 48.6 -64.4 -42.9 24.0 20.3 37.9 59 227 A E H X S+ 0 0 100 -4,-2.2 4,-2.8 1,-0.2 -2,-0.2 0.917 108.8 53.7 -63.6 -42.3 24.8 23.6 36.1 60 228 A D H X S+ 0 0 86 -4,-2.1 4,-1.5 1,-0.2 -1,-0.2 0.918 112.8 43.8 -56.6 -46.4 23.6 25.6 39.1 61 229 A Y H X S+ 0 0 70 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.921 112.3 51.2 -66.9 -46.0 25.9 23.7 41.4 62 230 A E H X S+ 0 0 71 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.889 106.3 55.5 -60.8 -40.4 28.9 23.8 39.0 63 231 A F H X S+ 0 0 126 -4,-2.8 4,-0.6 1,-0.2 -1,-0.2 0.906 109.2 47.4 -59.1 -41.4 28.4 27.6 38.6 64 232 A I H >< S+ 0 0 134 -4,-1.5 3,-0.7 -5,-0.2 -2,-0.2 0.929 110.2 53.0 -65.3 -44.3 28.7 28.0 42.4 65 233 A V H 3< S+ 0 0 83 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.886 118.9 32.3 -59.1 -44.0 31.8 25.8 42.6 66 234 A T H 3< 0 0 110 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.335 360.0 360.0 -99.4 8.7 33.8 27.6 40.0 67 235 A D << 0 0 175 -3,-0.7 -3,-0.0 -4,-0.6 -4,-0.0 -0.321 360.0 360.0 -53.7 360.0 32.5 31.1 40.6