==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JUN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN/INHIBITOR 22-AUG-11 3VGY . COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.YAO,S.WALTERSPERGER,M.T.WANG,S.CUI . 79 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6818.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 91.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 70 88.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -6 C A > 0 0 111 0, 0.0 4,-2.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0-142.7 -13.6 8.0 67.4 2 -5 C D H > + 0 0 137 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.813 360.0 52.2 -76.7 -24.8 -16.4 6.2 65.6 3 -4 C I H > S+ 0 0 115 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.918 111.5 47.0 -71.5 -43.0 -18.2 9.4 65.0 4 -3 C G H > S+ 0 0 34 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.875 112.0 51.1 -58.4 -41.9 -15.1 10.9 63.4 5 -2 C S H X S+ 0 0 70 -4,-2.1 4,-1.8 2,-0.2 -1,-0.2 0.852 109.4 50.9 -65.4 -35.9 -14.7 7.7 61.4 6 -1 C E H X S+ 0 0 116 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.944 111.8 45.9 -68.6 -46.1 -18.2 8.0 60.2 7 0 C F H X S+ 0 0 133 -4,-2.5 4,-2.6 1,-0.2 5,-0.2 0.928 112.3 51.7 -60.0 -43.2 -17.7 11.6 59.1 8 546 C S H X S+ 0 0 65 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.831 107.8 51.6 -68.9 -30.3 -14.4 10.7 57.4 9 547 C G H X S+ 0 0 26 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.937 112.3 46.7 -67.6 -47.3 -16.0 7.9 55.5 10 548 C I H X S+ 0 0 82 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.895 112.9 47.3 -60.6 -43.8 -18.8 10.1 54.2 11 549 C V H X S+ 0 0 81 -4,-2.6 4,-2.1 2,-0.2 -1,-0.2 0.899 110.6 52.7 -71.3 -38.6 -16.4 13.0 53.2 12 550 C Q H X S+ 0 0 89 -4,-1.9 4,-1.8 -5,-0.2 -1,-0.2 0.893 109.9 49.1 -56.4 -44.1 -14.1 10.6 51.4 13 551 C Q H X S+ 0 0 43 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.883 107.5 54.6 -66.6 -37.4 -17.1 9.3 49.5 14 552 C Q H X S+ 0 0 131 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.894 107.1 51.0 -59.9 -40.7 -18.2 12.9 48.7 15 553 C N H X S+ 0 0 70 -4,-2.1 4,-2.5 2,-0.2 -1,-0.2 0.892 109.4 51.2 -60.8 -41.1 -14.7 13.5 47.2 16 554 C N H X S+ 0 0 7 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.952 110.3 47.9 -61.9 -46.6 -15.1 10.3 45.1 17 555 C L H X S+ 0 0 87 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.911 111.6 50.6 -63.0 -40.6 -18.4 11.4 43.8 18 556 C L H X S+ 0 0 87 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.924 108.9 51.2 -61.0 -46.8 -17.0 14.8 43.0 19 557 C R H X S+ 0 0 67 -4,-2.5 4,-1.9 2,-0.2 -1,-0.2 0.843 109.4 50.9 -59.5 -38.5 -14.1 13.3 41.1 20 558 C A H X S+ 0 0 9 -4,-2.0 4,-2.8 2,-0.2 -2,-0.2 0.915 109.7 49.4 -64.2 -45.0 -16.5 11.1 39.0 21 559 C I H X S+ 0 0 105 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.914 110.6 52.1 -58.1 -44.8 -18.6 14.2 38.1 22 560 C E H X S+ 0 0 96 -4,-2.5 4,-1.4 2,-0.2 -2,-0.2 0.890 111.9 44.3 -60.3 -43.3 -15.3 16.0 37.1 23 561 C A H X S+ 0 0 3 -4,-1.9 4,-2.0 1,-0.2 -2,-0.2 0.904 111.6 53.2 -70.4 -41.1 -14.2 13.2 34.8 24 562 C Q H X S+ 0 0 98 -4,-2.8 4,-2.7 1,-0.2 -2,-0.2 0.857 103.9 57.3 -59.3 -36.0 -17.6 12.8 33.3 25 563 C Q H X S+ 0 0 92 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.889 105.4 50.6 -60.9 -41.5 -17.6 16.5 32.5 26 564 C H H X S+ 0 0 90 -4,-1.4 4,-1.7 2,-0.2 -2,-0.2 0.903 110.7 49.4 -61.4 -40.7 -14.4 16.0 30.5 27 565 C L H X S+ 0 0 33 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.915 109.5 51.2 -61.2 -45.9 -16.1 13.1 28.7 28 566 C L H X S+ 0 0 98 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.891 109.4 51.4 -57.6 -40.0 -19.2 15.3 28.0 29 567 C Q H X S+ 0 0 112 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.848 107.4 52.4 -67.7 -35.6 -16.8 18.0 26.6 30 568 C L H X S+ 0 0 19 -4,-1.7 4,-1.8 2,-0.2 -2,-0.2 0.872 109.6 49.4 -68.6 -38.1 -15.2 15.4 24.3 31 569 C T H X S+ 0 0 58 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.908 108.7 52.0 -67.9 -40.2 -18.6 14.4 22.9 32 570 C V H X S+ 0 0 64 -4,-2.2 4,-2.2 1,-0.2 -2,-0.2 0.931 110.4 49.2 -59.6 -45.6 -19.6 18.0 22.3 33 571 C W H X S+ 0 0 93 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.897 111.9 49.3 -53.5 -44.4 -16.3 18.5 20.3 34 572 C G H X S+ 0 0 4 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.887 109.8 50.0 -70.2 -38.3 -17.0 15.4 18.3 35 573 C I H X S+ 0 0 115 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.913 110.9 49.4 -64.1 -42.4 -20.5 16.4 17.5 36 574 C K H X S+ 0 0 146 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.894 110.1 51.5 -67.1 -38.0 -19.3 19.9 16.3 37 575 C Q H X S+ 0 0 44 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.919 112.8 45.0 -62.2 -46.2 -16.7 18.3 14.1 38 576 C L H X S+ 0 0 92 -4,-2.2 4,-2.6 2,-0.2 -2,-0.2 0.831 110.1 54.3 -68.7 -34.5 -19.2 16.0 12.5 39 577 C Q H X S+ 0 0 106 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.919 108.8 49.3 -67.0 -41.3 -21.7 18.8 12.1 40 578 C A H X S+ 0 0 54 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.897 113.1 46.9 -63.8 -40.8 -19.1 20.8 10.2 41 579 C R H X S+ 0 0 124 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.914 109.4 52.1 -70.8 -40.0 -18.2 17.9 8.0 42 580 C I H X S+ 0 0 84 -4,-2.6 4,-3.3 1,-0.2 -1,-0.2 0.883 108.9 52.7 -62.9 -38.8 -21.8 17.0 7.2 43 581 C L H X S+ 0 0 38 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.904 105.7 52.4 -59.2 -45.8 -22.4 20.6 6.2 44 582 C A H X S+ 0 0 64 -4,-1.7 4,-1.7 2,-0.2 -2,-0.2 0.915 113.7 45.0 -61.2 -41.2 -19.5 20.6 3.8 45 583 C V H >X S+ 0 0 75 -4,-2.2 4,-2.0 1,-0.2 3,-0.8 0.987 110.8 52.9 -60.1 -55.2 -20.9 17.5 2.2 46 584 C E H 3< S+ 0 0 126 -4,-3.3 -2,-0.2 1,-0.3 -1,-0.2 0.790 110.9 47.5 -56.1 -29.2 -24.4 19.0 2.2 47 585 C R H 3< S+ 0 0 197 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.803 105.6 56.7 -84.4 -31.2 -23.2 22.1 0.3 48 586 C Y H << 0 0 210 -4,-1.7 -2,-0.2 -3,-0.8 -1,-0.2 0.868 360.0 360.0 -60.2 -37.9 -21.2 20.1 -2.2 49 587 C L < 0 0 167 -4,-2.0 -3,-0.0 -5,-0.1 0, 0.0 -0.075 360.0 360.0 -92.5 360.0 -24.5 18.3 -3.0 50 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 51 623 D W > 0 0 205 0, 0.0 4,-1.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 90.6 -4.9 14.9 9.5 52 624 D N H > + 0 0 70 2,-0.2 4,-3.2 1,-0.2 5,-0.3 0.761 360.0 70.3 -70.8 -22.2 -8.1 14.7 11.4 53 625 D E H > S+ 0 0 121 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.959 98.8 44.2 -57.9 -54.4 -7.4 11.0 11.5 54 626 D M H > S+ 0 0 110 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.859 117.5 48.1 -56.7 -35.6 -4.5 11.5 13.9 55 627 D T H X S+ 0 0 45 -4,-1.1 4,-2.6 2,-0.2 -2,-0.2 0.815 108.2 50.8 -78.8 -31.2 -6.7 13.8 15.9 56 628 D W H X S+ 0 0 54 -4,-3.2 4,-1.8 2,-0.2 -1,-0.2 0.799 110.4 53.0 -72.8 -27.6 -9.8 11.5 16.0 57 629 D M H X S+ 0 0 91 -4,-2.0 4,-1.4 -5,-0.3 -2,-0.2 0.848 108.6 48.4 -68.5 -37.5 -7.3 9.0 17.2 58 630 D E H X S+ 0 0 107 -4,-1.3 4,-2.2 2,-0.2 3,-0.4 0.945 110.1 52.9 -62.7 -46.2 -6.3 11.5 19.9 59 631 D W H X S+ 0 0 44 -4,-2.6 4,-2.6 1,-0.3 -2,-0.2 0.863 108.8 49.4 -55.3 -43.2 -10.0 12.0 20.7 60 632 D E H X S+ 0 0 105 -4,-1.8 4,-2.3 2,-0.2 -1,-0.3 0.798 109.7 50.5 -67.8 -34.1 -10.5 8.3 21.1 61 633 D R H X S+ 0 0 126 -4,-1.4 4,-2.5 -3,-0.4 -1,-0.2 0.850 110.1 50.2 -77.5 -35.4 -7.6 8.0 23.4 62 634 D E H X S+ 0 0 62 -4,-2.2 4,-2.6 2,-0.2 5,-0.3 0.943 111.1 49.0 -63.9 -50.1 -8.8 10.9 25.5 63 635 D I H X S+ 0 0 29 -4,-2.6 4,-2.1 1,-0.2 5,-0.2 0.937 112.5 49.1 -50.8 -50.6 -12.3 9.2 25.7 64 636 D E H X S+ 0 0 81 -4,-2.3 4,-2.4 1,-0.2 -2,-0.2 0.924 111.5 48.7 -60.8 -42.3 -10.6 6.0 26.7 65 637 D N H X S+ 0 0 94 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.897 112.7 45.6 -66.5 -41.4 -8.4 7.6 29.4 66 638 D Y H X S+ 0 0 72 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.852 113.4 51.1 -69.6 -33.0 -11.3 9.5 31.0 67 639 D T H X S+ 0 0 55 -4,-2.1 4,-2.9 -5,-0.3 -2,-0.2 0.904 109.3 50.6 -70.2 -42.7 -13.5 6.4 30.9 68 640 D K H X S+ 0 0 125 -4,-2.4 4,-2.1 -5,-0.2 -2,-0.2 0.928 111.4 48.4 -60.1 -43.6 -10.7 4.4 32.6 69 641 D L H X S+ 0 0 65 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.940 111.1 50.1 -64.6 -41.9 -10.4 7.0 35.3 70 642 D I H X S+ 0 0 10 -4,-2.5 4,-2.8 1,-0.2 5,-0.2 0.933 109.7 50.7 -63.2 -44.7 -14.2 7.1 35.8 71 643 D Y H X S+ 0 0 168 -4,-2.9 4,-2.8 1,-0.2 -1,-0.2 0.898 110.2 51.0 -57.8 -38.8 -14.3 3.3 36.2 72 644 D K H X S+ 0 0 87 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.901 111.7 46.1 -63.3 -42.0 -11.5 3.5 38.7 73 645 D I H X S+ 0 0 2 -4,-2.5 4,-1.7 2,-0.2 -2,-0.2 0.917 112.4 50.3 -70.2 -41.0 -13.3 6.1 40.7 74 646 D L H X S+ 0 0 78 -4,-2.8 4,-0.5 -5,-0.2 -2,-0.2 0.930 108.0 53.9 -63.3 -42.0 -16.6 4.1 40.6 75 647 D E H >X S+ 0 0 114 -4,-2.8 3,-1.1 -5,-0.2 4,-0.7 0.942 110.3 46.5 -55.8 -46.3 -14.6 1.0 41.7 76 648 D E H 3< S+ 0 0 68 -4,-1.9 3,-0.2 1,-0.2 4,-0.2 0.772 107.8 59.5 -65.0 -27.0 -13.3 3.0 44.8 77 649 D S H 3< S+ 0 0 14 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.461 98.1 56.3 -81.6 -7.3 -16.9 4.2 45.4 78 650 D Q H << S+ 0 0 176 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.664 99.4 59.5 -95.0 -20.3 -18.4 0.8 45.9 79 651 D E < 0 0 156 -4,-0.7 -2,-0.2 -3,-0.2 -1,-0.1 0.541 360.0 360.0 -85.0 -8.7 -16.0 -0.1 48.7 80 652 D Q 0 0 117 -4,-0.2 -1,-0.2 -67,-0.0 -4,-0.0 -0.700 360.0 360.0 -92.8 360.0 -17.4 2.9 50.6