==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBONUCLEOPROTEIN 29-NOV-95 1VIG . COMPND 2 MOLECULE: VIGILIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.MUSCO,G.STIER,C.JOSEPH,M.A.C.MORELLI,M.NILGES,T.J.GIBSON, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5844.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 16.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 26.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A I 0 0 210 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.0 -14.6 -13.5 9.9 2 7 A N - 0 0 119 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.403 360.0-154.3 62.8 152.0 -13.9 -10.1 8.3 3 8 A R + 0 0 215 2,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.108 45.6 124.2-153.3 42.4 -15.4 -9.2 4.9 4 9 A M - 0 0 66 49,-0.0 2,-0.4 1,-0.0 51,-0.2 -0.603 58.9-110.2-103.7 166.5 -13.0 -6.5 3.5 5 10 A D E -A 54 0A 76 49,-1.3 49,-2.4 -2,-0.2 2,-0.2 -0.797 36.0-178.0 -99.9 138.8 -11.2 -6.5 0.2 6 11 A Y E +A 53 0A 184 -2,-0.4 47,-0.3 47,-0.3 2,-0.2 -0.784 10.3 167.1-129.0 172.5 -7.4 -6.8 -0.0 7 12 A V E -A 52 0A 42 45,-1.4 45,-1.3 -2,-0.2 2,-0.4 -0.806 20.7-139.5 176.9 140.7 -4.6 -6.8 -2.6 8 13 A E E -A 51 0A 90 -2,-0.2 2,-0.5 43,-0.2 43,-0.2 -0.878 11.1-141.7-114.9 146.8 -0.8 -6.6 -2.8 9 14 A I E -A 50 0A 2 41,-1.6 41,-1.8 -2,-0.4 2,-0.2 -0.916 23.4-120.6-109.6 126.7 1.4 -4.7 -5.2 10 15 A N E +A 49 0A 97 -2,-0.5 2,-0.3 39,-0.2 39,-0.3 -0.465 41.1 170.8 -67.2 127.3 4.6 -6.3 -6.4 11 16 A I E +A 48 0A 18 37,-2.4 37,-2.0 -2,-0.2 3,-0.1 -0.930 20.0 168.0-136.3 158.8 7.6 -4.2 -5.5 12 17 A D + 0 0 119 -2,-0.3 3,-0.2 35,-0.2 -1,-0.1 0.486 54.7 68.8-131.5 -75.9 11.4 -4.6 -5.7 13 18 A H S S- 0 0 162 1,-0.2 2,-3.4 2,-0.1 3,-0.4 0.115 107.4 -73.7 -46.3 167.7 13.6 -1.5 -5.1 14 19 A K S > S+ 0 0 142 1,-0.2 4,-0.8 2,-0.1 -1,-0.2 -0.326 82.4 138.3 -67.7 66.5 13.7 0.1 -1.7 15 20 A F H > + 0 0 76 -2,-3.4 4,-2.7 -3,-0.2 -1,-0.2 0.833 61.8 59.5 -81.0 -35.5 10.3 1.5 -2.1 16 21 A H H >> S+ 0 0 9 -3,-0.4 4,-3.5 2,-0.2 3,-0.8 0.989 108.4 39.6 -55.3 -72.9 9.2 0.8 1.4 17 22 A R H 34 S+ 0 0 171 1,-0.3 -1,-0.2 2,-0.2 -2,-0.2 0.846 119.8 49.8 -46.4 -39.2 11.8 2.8 3.3 18 23 A H H >< S+ 0 0 134 -4,-0.8 3,-0.5 2,-0.2 -1,-0.3 0.852 114.0 44.5 -69.9 -35.6 11.4 5.5 0.7 19 24 A L H << S+ 0 0 20 -4,-2.7 7,-0.8 -3,-0.8 6,-0.4 0.877 119.5 40.6 -76.0 -39.8 7.6 5.4 1.1 20 25 A I T 3< S- 0 0 31 -4,-3.5 -1,-0.2 1,-0.3 -2,-0.2 0.148 96.8-154.7 -94.1 18.5 7.7 5.3 4.9 21 26 A G < - 0 0 45 -3,-0.5 -1,-0.3 -5,-0.3 -2,-0.1 -0.175 61.9 -34.5 46.4-122.4 10.5 7.9 4.9 22 27 A K S S+ 0 0 212 -3,-0.1 -1,-0.2 -4,-0.1 -2,-0.1 0.832 144.7 3.6 -95.8 -43.8 12.4 7.3 8.2 23 28 A S S S- 0 0 121 -3,-0.0 -2,-0.2 -6,-0.0 -3,-0.1 0.783 114.6 -87.4-108.3 -51.0 9.6 6.4 10.5 24 29 A G + 0 0 31 -5,-0.1 -4,-0.2 -7,-0.0 -3,-0.1 -0.021 60.3 143.6 136.4 118.2 6.5 6.2 8.2 25 30 A A >> + 0 0 71 -6,-0.4 3,-1.8 -2,-0.1 4,-1.6 0.484 66.7 70.2-140.8 -44.4 4.0 8.9 7.1 26 31 A N H 3> S+ 0 0 31 -7,-0.8 4,-1.9 1,-0.3 5,-0.2 0.863 92.0 65.9 -49.3 -40.1 3.0 8.2 3.5 27 32 A I H 3> S+ 0 0 58 1,-0.3 4,-1.8 2,-0.2 11,-0.4 0.852 105.9 42.7 -51.7 -36.9 1.1 5.1 4.8 28 33 A N H <> S+ 0 0 93 -3,-1.8 4,-2.0 2,-0.2 5,-0.4 0.829 103.4 66.2 -79.1 -34.2 -1.2 7.5 6.6 29 34 A R H X S+ 0 0 196 -4,-1.6 4,-1.3 2,-0.2 -2,-0.2 0.906 115.1 29.3 -53.1 -45.5 -1.5 9.9 3.7 30 35 A I H X>S+ 0 0 17 -4,-1.9 4,-4.2 2,-0.2 5,-0.7 0.970 115.6 56.2 -78.9 -62.7 -3.3 7.2 1.7 31 36 A K H <5S+ 0 0 105 -4,-1.8 -2,-0.2 1,-0.3 -3,-0.2 0.763 120.3 36.5 -40.6 -30.7 -5.0 5.3 4.4 32 37 A D H <5S+ 0 0 117 -4,-2.0 -1,-0.3 3,-0.2 -2,-0.2 0.792 121.3 44.4 -93.7 -35.3 -6.6 8.6 5.4 33 38 A Q H <5S+ 0 0 134 -4,-1.3 -2,-0.2 -5,-0.4 -3,-0.2 0.903 129.9 25.4 -75.8 -44.0 -7.0 10.0 1.9 34 39 A Y T <5S- 0 0 59 -4,-4.2 -3,-0.2 -5,-0.1 -1,-0.2 0.294 102.1-127.0-102.5 7.4 -8.4 6.8 0.3 35 40 A K < + 0 0 178 -5,-0.7 -3,-0.2 1,-0.1 -4,-0.2 0.910 67.6 127.6 46.1 50.1 -9.8 5.5 3.6 36 41 A V - 0 0 9 -6,-0.3 2,-0.4 22,-0.1 18,-0.2 -0.547 68.4-107.6-122.1-172.7 -7.9 2.2 3.1 37 42 A S E +B 53 0A 42 16,-1.4 16,-1.2 -2,-0.2 2,-0.3 -0.667 41.0 172.4-123.9 76.6 -5.5 -0.0 4.9 38 43 A V E -B 52 0A 16 -2,-0.4 2,-0.4 -11,-0.4 14,-0.2 -0.679 6.1-179.0 -86.8 135.7 -2.1 0.3 3.3 39 44 A R E -B 51 0A 132 12,-2.7 12,-1.8 -2,-0.3 -2,-0.0 -0.999 24.3-143.2-139.8 137.4 0.9 -1.4 5.1 40 45 A I - 0 0 29 -2,-0.4 10,-0.1 10,-0.2 -2,-0.0 -0.848 20.3-146.6-100.9 103.2 4.6 -1.6 4.3 41 46 A P - 0 0 16 0, 0.0 2,-2.9 0, 0.0 8,-0.2 -0.575 10.3-138.2 -72.9 113.7 5.9 -5.0 5.3 42 47 A P + 0 0 122 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.341 68.2 100.5 -71.2 66.0 9.5 -4.7 6.5 43 48 A D - 0 0 75 -2,-2.9 5,-0.0 2,-0.0 0, 0.0 -0.853 55.1-157.9-141.1 175.3 10.7 -7.8 4.6 44 49 A S + 0 0 101 -2,-0.3 2,-1.3 4,-0.1 4,-0.1 -0.314 22.1 162.4-157.9 63.0 12.5 -8.8 1.4 45 50 A E S S- 0 0 126 2,-0.3 2,-3.0 1,-0.1 -2,-0.0 -0.691 76.1 -71.0 -90.7 87.4 11.7 -12.4 0.4 46 51 A K S S+ 0 0 198 -2,-1.3 2,-0.4 -34,-0.0 -1,-0.1 -0.346 126.9 31.7 64.7 -72.7 12.8 -12.5 -3.2 47 52 A S S S- 0 0 52 -2,-3.0 -2,-0.3 2,-0.0 -35,-0.2 -0.960 82.3-134.2-120.0 133.0 9.9 -10.2 -4.3 48 53 A N E -A 11 0A 13 -37,-2.0 -37,-2.4 -2,-0.4 2,-0.2 -0.464 18.1-172.7 -81.7 154.4 8.3 -7.5 -2.2 49 54 A L E -A 10 0A 51 -39,-0.3 -39,-0.2 -8,-0.2 2,-0.1 -0.754 13.5-147.3-152.8 99.7 4.5 -7.1 -1.9 50 55 A I E -A 9 0A 3 -41,-1.8 -41,-1.6 -2,-0.2 2,-0.4 -0.426 24.2-122.0 -68.4 138.7 3.0 -4.1 -0.2 51 56 A R E +AB 8 39A 97 -12,-1.8 -12,-2.7 -43,-0.2 2,-0.4 -0.671 32.8 174.8 -86.7 135.6 -0.3 -4.9 1.6 52 57 A I E +AB 7 38A 2 -45,-1.3 -45,-1.4 -2,-0.4 2,-0.3 -0.936 7.6 156.5-144.0 115.7 -3.5 -2.9 0.6 53 58 A E E +AB 6 37A 59 -16,-1.2 -16,-1.4 -2,-0.4 -47,-0.3 -0.996 13.7 116.8-145.0 136.6 -6.9 -3.7 2.0 54 59 A G E -A 5 0A 11 -49,-2.4 -49,-1.3 -2,-0.3 -18,-0.1 -0.266 52.9-116.8-154.8-114.3 -10.1 -1.6 2.3 55 60 A D S S+ 0 0 74 1,-0.4 5,-0.1 -51,-0.2 -1,-0.1 0.076 77.1 56.6-169.2 -65.0 -13.5 -2.0 0.8 56 61 A P S >> S- 0 0 78 0, 0.0 3,-1.4 0, 0.0 4,-0.9 0.125 107.7 -70.5 -72.1-166.5 -14.8 0.8 -1.6 57 62 A Q H 3> S+ 0 0 141 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.651 123.6 79.7 -62.6 -14.5 -13.1 2.1 -4.7 58 63 A G H 3> S+ 0 0 13 2,-0.2 4,-2.6 1,-0.2 -1,-0.3 0.863 93.3 45.6 -62.0 -37.9 -10.6 3.6 -2.3 59 64 A V H <> S+ 0 0 8 -3,-1.4 4,-1.5 2,-0.2 -1,-0.2 0.931 118.5 40.1 -72.5 -46.6 -8.7 0.3 -1.9 60 65 A Q H X S+ 0 0 98 -4,-0.9 4,-1.6 2,-0.2 -2,-0.2 0.811 121.7 45.6 -71.7 -29.6 -8.7 -0.6 -5.6 61 66 A Q H X S+ 0 0 97 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.962 114.9 43.3 -76.6 -56.1 -7.9 3.0 -6.5 62 67 A A H X S+ 0 0 0 -4,-2.6 4,-2.5 -5,-0.3 5,-0.2 0.801 113.4 57.0 -59.8 -28.3 -5.2 3.7 -3.9 63 68 A K H X S+ 0 0 48 -4,-1.5 4,-1.9 -5,-0.2 -1,-0.2 0.948 112.5 37.3 -68.0 -49.9 -3.8 0.3 -4.8 64 69 A R H X S+ 0 0 152 -4,-1.6 4,-1.5 2,-0.2 5,-0.3 0.771 115.8 57.6 -72.4 -26.4 -3.4 1.1 -8.5 65 70 A E H X>S+ 0 0 59 -4,-2.6 5,-2.6 2,-0.2 4,-1.2 0.956 109.5 41.2 -68.5 -52.4 -2.4 4.6 -7.5 66 71 A L H <5S+ 0 0 10 -4,-2.5 -2,-0.2 3,-0.2 -1,-0.2 0.928 116.4 49.4 -61.6 -47.2 0.6 3.6 -5.3 67 72 A L H <5S+ 0 0 80 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.833 125.5 30.0 -61.6 -33.4 1.6 0.9 -7.8 68 73 A E H <5S+ 0 0 127 -4,-1.5 -3,-0.2 -5,-0.2 -2,-0.2 0.905 140.9 11.5 -88.8 -82.0 1.4 3.5 -10.6 69 74 A L T <5S- 0 0 113 -4,-1.2 -3,-0.2 -5,-0.3 -2,-0.1 0.875 78.7-162.1 -66.9 -38.3 2.2 7.0 -9.4 70 75 A A < 0 0 16 -5,-2.6 -4,-0.2 1,-0.3 -3,-0.1 0.842 360.0 360.0 57.1 33.8 3.5 5.6 -6.0 71 76 A S 0 0 125 -6,-0.3 -1,-0.3 -45,-0.0 -5,-0.1 0.620 360.0 360.0 63.7 360.0 3.0 9.2 -4.6