==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 21-SEP-11 3VI6 . COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L30; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.KAWAGUCHI,T.OSE,M.YAO,I.TANAKA . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5935.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 63.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 32.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 9 A K 0 0 200 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 134.2 13.8 6.2 44.2 2 10 A S - 0 0 96 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.241 360.0-131.3 -60.2 147.7 13.4 6.5 40.4 3 11 A L S S+ 0 0 180 2,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.613 72.5 117.8 -70.5 -15.4 16.3 7.4 38.2 4 12 A E S S- 0 0 119 1,-0.1 2,-0.1 2,-0.1 -2,-0.0 -0.272 71.9-113.8 -57.5 134.7 14.2 10.1 36.5 5 13 A S - 0 0 58 1,-0.1 3,-0.3 61,-0.0 4,-0.3 -0.447 11.6-145.5 -66.8 143.0 15.4 13.6 36.9 6 14 A I S > S+ 0 0 18 1,-0.2 4,-2.7 -2,-0.1 5,-0.2 0.463 72.7 103.7 -84.9 -0.9 13.2 16.0 39.0 7 15 A N H > S+ 0 0 58 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.873 81.0 42.7 -53.0 -50.5 14.1 19.0 36.8 8 16 A S H > S+ 0 0 82 -3,-0.3 4,-1.8 1,-0.2 -1,-0.2 0.900 114.7 51.6 -65.3 -39.0 10.9 19.2 34.8 9 17 A R H > S+ 0 0 58 -4,-0.3 4,-1.7 2,-0.2 -2,-0.2 0.872 108.5 52.3 -61.5 -39.0 8.8 18.6 38.0 10 18 A L H X S+ 0 0 0 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.916 106.3 52.9 -64.1 -42.6 10.7 21.4 39.7 11 19 A Q H X S+ 0 0 97 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.877 106.0 54.5 -58.7 -38.2 9.9 23.7 36.8 12 20 A L H X S+ 0 0 78 -4,-1.8 4,-2.4 2,-0.2 81,-0.4 0.880 107.6 49.8 -64.2 -37.7 6.2 22.8 37.3 13 21 A V H X S+ 0 0 0 -4,-1.7 4,-2.7 2,-0.2 -2,-0.2 0.926 108.2 53.2 -63.4 -46.0 6.5 23.9 40.9 14 22 A M H < S+ 0 0 36 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.908 117.5 38.2 -54.3 -41.7 8.2 27.2 39.9 15 23 A K H < S+ 0 0 173 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.832 137.0 10.5 -78.2 -35.5 5.2 27.8 37.6 16 24 A S H < S+ 0 0 47 -4,-2.4 -3,-0.2 75,-0.2 -2,-0.2 0.491 110.0 71.6-129.8 -10.6 2.3 26.5 39.6 17 25 A G S < S- 0 0 24 -4,-2.7 2,-0.4 -5,-0.4 -4,-0.0 -0.254 72.0-108.4-104.6-170.6 3.3 25.7 43.2 18 26 A K E +A 90 0A 113 72,-2.6 71,-2.3 -2,-0.1 72,-2.1 -0.986 47.7 145.7-123.9 135.0 4.3 27.5 46.4 19 27 A Y E -A 88 0A 60 -2,-0.4 2,-0.3 69,-0.3 69,-0.2 -0.976 34.9-138.2-160.2 162.1 7.9 27.4 47.6 20 28 A V E -A 87 0A 21 67,-2.3 67,-2.2 -2,-0.3 2,-0.3 -0.965 17.6-145.9-128.3 151.0 10.7 29.3 49.4 21 29 A L E +A 86 0A 36 -2,-0.3 4,-0.4 65,-0.2 65,-0.2 -0.889 52.2 32.4-114.8 148.0 14.4 29.4 48.5 22 30 A G S > S- 0 0 32 63,-2.7 4,-2.2 -2,-0.3 5,-0.2 0.069 86.5 -76.9 96.2 157.8 17.5 29.6 50.7 23 31 A Y H > S+ 0 0 60 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.906 120.5 50.8 -55.2 -53.4 18.6 28.4 54.2 24 32 A K H > S+ 0 0 148 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.930 117.3 36.8 -59.0 -50.9 16.7 30.8 56.4 25 33 A Q H > S+ 0 0 83 -4,-0.4 4,-2.6 2,-0.2 -1,-0.2 0.841 115.8 54.2 -72.7 -33.4 13.3 30.4 54.8 26 34 A T H X S+ 0 0 0 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.952 111.4 45.1 -63.9 -48.1 13.7 26.7 54.2 27 35 A L H X S+ 0 0 26 -4,-2.9 4,-2.8 -5,-0.2 -2,-0.2 0.907 112.1 52.7 -61.1 -43.7 14.5 26.1 57.8 28 36 A K H X S+ 0 0 103 -4,-2.1 4,-1.7 -5,-0.3 -2,-0.2 0.944 110.9 46.7 -56.1 -50.4 11.6 28.3 58.9 29 37 A M H <>S+ 0 0 16 -4,-2.6 5,-2.4 1,-0.2 6,-1.3 0.863 113.0 49.1 -62.4 -38.4 9.2 26.4 56.7 30 38 A I H ><5S+ 0 0 1 -4,-2.3 3,-1.5 4,-0.2 -1,-0.2 0.957 112.5 47.7 -62.5 -48.9 10.5 23.0 58.0 31 39 A R H 3<5S+ 0 0 152 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.724 110.7 51.4 -68.9 -24.5 10.2 24.1 61.7 32 40 A Q T 3<5S- 0 0 99 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.406 114.2-116.3 -89.8 -1.4 6.7 25.5 61.2 33 41 A G T < 5S+ 0 0 58 -3,-1.5 -3,-0.2 -4,-0.3 -2,-0.1 0.709 85.4 115.5 73.5 23.5 5.5 22.2 59.6 34 42 A K < + 0 0 111 -5,-2.4 2,-0.5 -6,-0.2 -4,-0.2 0.604 42.9 100.2 -97.9 -17.1 4.8 23.8 56.3 35 43 A A + 0 0 8 -6,-1.3 54,-0.2 1,-0.2 3,-0.1 -0.599 39.8 176.7 -77.9 121.7 7.4 22.0 54.2 36 44 A K S S+ 0 0 121 52,-2.9 26,-0.6 -2,-0.5 2,-0.3 0.746 77.0 2.8 -90.0 -29.7 6.0 19.2 52.1 37 45 A L E -bC 62 88A 24 51,-1.2 51,-3.4 24,-0.1 2,-0.4 -0.954 65.1-154.9-156.2 138.2 9.4 18.4 50.4 38 46 A V E -bC 63 87A 0 24,-2.2 26,-3.3 -2,-0.3 2,-0.4 -0.920 9.7-155.4-113.9 142.3 12.9 19.9 50.8 39 47 A I E -bC 64 86A 0 47,-2.6 47,-1.6 -2,-0.4 2,-0.4 -0.960 6.8-169.1-118.8 138.2 15.5 19.9 48.1 40 48 A L E -bC 65 85A 2 24,-2.0 26,-2.0 -2,-0.4 45,-0.2 -0.994 19.0-130.5-127.3 125.8 19.3 20.0 48.7 41 49 A A > - 0 0 1 43,-2.9 3,-1.4 -2,-0.4 28,-0.2 -0.298 26.3-115.5 -65.0 154.6 22.0 20.6 46.0 42 50 A N T 3 S+ 0 0 81 26,-2.9 27,-0.2 1,-0.3 -1,-0.1 0.690 113.6 47.6 -70.5 -16.0 24.9 18.2 46.0 43 51 A N T 3 S+ 0 0 67 25,-0.2 -1,-0.3 2,-0.0 3,-0.1 0.100 77.1 129.5-115.2 21.1 27.4 21.0 46.8 44 52 A C S < S- 0 0 7 -3,-1.4 -4,-0.0 40,-0.2 39,-0.0 -0.382 77.8 -82.8 -54.5 151.9 25.5 22.6 49.7 45 53 A P > - 0 0 62 0, 0.0 4,-2.7 0, 0.0 5,-0.2 -0.357 36.9-127.3 -58.2 142.8 27.7 23.0 52.7 46 54 A A H > S+ 0 0 71 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.891 109.0 51.7 -61.8 -40.9 28.0 19.8 54.7 47 55 A L H > S+ 0 0 152 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.885 112.5 46.6 -65.9 -35.1 27.0 21.5 58.0 48 56 A R H > S+ 0 0 81 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.911 110.9 50.8 -71.5 -43.0 24.0 23.1 56.3 49 57 A K H X S+ 0 0 52 -4,-2.7 4,-2.9 1,-0.2 5,-0.2 0.938 112.8 48.2 -55.9 -46.5 22.9 19.8 54.7 50 58 A S H X S+ 0 0 67 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.912 112.2 47.5 -64.1 -43.5 23.2 18.1 58.1 51 59 A E H X S+ 0 0 61 -4,-2.2 4,-2.4 2,-0.2 5,-0.2 0.925 114.7 45.8 -62.4 -47.7 21.2 20.9 59.9 52 60 A I H X S+ 0 0 0 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.930 113.3 49.7 -63.1 -44.0 18.4 20.8 57.2 53 61 A E H X S+ 0 0 65 -4,-2.9 4,-2.1 -5,-0.2 -1,-0.2 0.888 110.8 51.6 -60.1 -40.6 18.3 17.0 57.3 54 62 A Y H X S+ 0 0 122 -4,-2.4 4,-2.0 -5,-0.2 -2,-0.2 0.956 113.0 41.7 -61.9 -54.4 18.1 17.0 61.0 55 63 A Y H X S+ 0 0 66 -4,-2.4 4,-2.0 1,-0.2 -2,-0.2 0.875 113.0 54.4 -65.2 -35.3 15.2 19.4 61.3 56 64 A A H <>S+ 0 0 1 -4,-2.6 5,-2.7 -5,-0.2 4,-0.5 0.895 106.3 53.3 -63.8 -37.7 13.4 17.8 58.4 57 65 A M H ><5S+ 0 0 129 -4,-2.1 3,-1.1 1,-0.2 -2,-0.2 0.929 109.4 47.5 -60.0 -46.8 13.7 14.5 60.3 58 66 A L H 3<5S+ 0 0 97 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.863 114.2 47.6 -63.0 -35.7 12.1 16.0 63.4 59 67 A A T 3<5S- 0 0 36 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.469 108.7-124.8 -82.4 -3.6 9.3 17.5 61.2 60 68 A K T < 5 + 0 0 196 -3,-1.1 2,-0.5 -4,-0.5 -3,-0.2 0.873 61.8 148.2 55.9 41.4 8.8 14.1 59.3 61 69 A T < - 0 0 16 -5,-2.7 -1,-0.2 -6,-0.1 -24,-0.1 -0.906 48.6-118.5-110.4 129.4 9.4 16.0 56.1 62 70 A G E -b 37 0A 42 -26,-0.6 -24,-2.2 -2,-0.5 2,-0.5 -0.337 20.9-154.6 -67.0 144.2 11.0 14.3 53.1 63 71 A V E -b 38 0A 32 -26,-0.2 2,-0.6 -2,-0.0 -24,-0.2 -0.990 0.8-156.5-120.2 124.3 14.3 15.6 51.7 64 72 A H E -b 39 0A 31 -26,-3.3 -24,-2.0 -2,-0.5 2,-1.0 -0.903 12.0-144.6 -99.1 120.8 15.2 15.0 48.1 65 73 A H E -b 40 0A 91 -2,-0.6 -24,-0.2 -26,-0.2 -26,-0.1 -0.752 24.0-131.2 -88.5 103.6 19.0 15.1 47.6 66 74 A Y - 0 0 10 -26,-2.0 -24,-0.1 -2,-1.0 7,-0.0 -0.222 1.7-137.6 -58.8 138.8 19.3 16.7 44.2 67 75 A S S S+ 0 0 101 -26,-0.1 2,-0.1 -25,-0.1 -1,-0.1 0.668 82.2 56.5 -72.2 -19.2 21.6 14.9 41.8 68 76 A G S S- 0 0 5 1,-0.2 -26,-2.9 2,-0.0 -25,-0.2 -0.434 86.9 -94.7-107.9-176.4 23.2 18.1 40.5 69 77 A N > - 0 0 46 -28,-0.2 4,-2.5 -27,-0.2 -1,-0.2 -0.226 43.2 -92.1 -93.0-179.5 24.9 21.1 42.0 70 78 A N H > S+ 0 0 16 2,-0.2 13,-2.2 1,-0.2 4,-1.9 0.682 123.9 57.6 -72.5 -18.4 23.7 24.5 43.1 71 79 A I H > S+ 0 0 80 11,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.931 111.4 42.9 -70.0 -48.2 24.4 26.0 39.6 72 80 A E H > S+ 0 0 96 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.892 115.8 48.4 -62.9 -41.0 22.0 23.4 38.1 73 81 A L H X S+ 0 0 0 -4,-2.5 4,-1.8 2,-0.2 -1,-0.2 0.924 110.7 50.2 -69.7 -41.7 19.5 23.8 40.9 74 82 A G H <>S+ 0 0 1 -4,-1.9 5,-2.7 9,-0.2 -2,-0.2 0.913 112.9 47.8 -58.8 -42.7 19.5 27.7 40.5 75 83 A T H ><5S+ 0 0 99 -4,-2.3 3,-1.7 1,-0.2 -2,-0.2 0.916 109.0 52.5 -65.2 -44.0 19.0 27.3 36.8 76 84 A A H 3<5S+ 0 0 17 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.824 108.7 52.1 -61.4 -30.8 16.2 24.7 37.3 77 85 A C T 3<5S- 0 0 6 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.411 118.1-115.0 -84.0 -0.8 14.5 27.3 39.6 78 86 A G T < 5S+ 0 0 56 -3,-1.7 -3,-0.2 1,-0.2 2,-0.2 0.752 71.7 133.3 74.1 24.1 14.9 30.0 36.9 79 87 A K < - 0 0 73 -5,-2.7 -1,-0.2 2,-0.2 4,-0.1 -0.606 60.4-137.4-102.9 164.9 17.3 32.1 38.9 80 88 A Y S S+ 0 0 230 -2,-0.2 2,-0.3 2,-0.1 -5,-0.1 -0.061 85.2 61.6-110.2 29.2 20.6 33.8 38.0 81 89 A Y S S- 0 0 134 -7,-0.1 -2,-0.2 -11,-0.1 2,-0.1 -0.958 95.5 -83.5-147.0 161.6 22.3 32.7 41.2 82 90 A R - 0 0 154 -2,-0.3 2,-0.5 -8,-0.1 -11,-0.2 -0.415 37.0-157.9 -70.2 142.3 23.2 29.5 42.9 83 91 A V + 0 0 6 -13,-2.2 -9,-0.2 1,-0.1 -10,-0.2 -0.988 17.8 173.8-125.8 120.9 20.6 27.7 44.9 84 92 A C + 0 0 18 -2,-0.5 -43,-2.9 1,-0.3 2,-0.3 0.791 67.3 9.1 -90.6 -37.0 21.5 25.2 47.6 85 93 A T E + C 0 40A 1 -45,-0.2 -63,-2.7 -15,-0.1 2,-0.3 -0.991 54.0 174.3-149.5 151.3 18.1 24.5 49.2 86 94 A L E -AC 21 39A 0 -47,-1.6 -47,-2.6 -2,-0.3 2,-0.5 -0.982 20.5-138.8-149.5 157.4 14.4 25.1 48.8 87 95 A A E -AC 20 38A 0 -67,-2.2 -67,-2.3 -2,-0.3 2,-0.6 -0.990 13.6-145.6-118.1 129.0 11.2 24.0 50.5 88 96 A I E +AC 19 37A 0 -51,-3.4 -52,-2.9 -2,-0.5 -51,-1.2 -0.844 20.1 174.1 -91.0 120.2 8.1 23.1 48.5 89 97 A I E S+ 0 0 37 -71,-2.3 -70,-0.2 -2,-0.6 -1,-0.2 0.807 77.3 13.0 -93.7 -37.7 5.0 24.2 50.4 90 98 A D E -A 18 0A 82 -72,-2.1 -72,-2.6 -77,-0.1 -1,-0.4 -0.973 63.6-153.7-140.8 123.3 2.5 23.3 47.6 91 99 A P > - 0 0 20 0, 0.0 3,-2.0 0, 0.0 5,-0.2 0.592 27.5-166.2 -72.8 -9.9 3.6 21.2 44.6 92 100 A G T 3 - 0 0 29 1,-0.3 -75,-0.2 -76,-0.1 -79,-0.1 -0.413 67.2 -16.4 60.1-127.6 0.8 22.8 42.5 93 101 A D T 3 S+ 0 0 138 -81,-0.4 -1,-0.3 -2,-0.1 2,-0.2 0.404 111.4 107.2 -89.4 0.1 0.4 20.8 39.3 94 102 A S < - 0 0 8 -3,-2.0 3,-0.4 -82,-0.1 -85,-0.1 -0.574 65.3-145.5 -79.5 141.0 3.8 18.9 39.6 95 103 A D + 0 0 109 -2,-0.2 -1,-0.1 1,-0.2 -86,-0.1 0.039 63.4 125.7 -88.2 29.3 3.6 15.3 40.6 96 104 A I 0 0 22 1,-0.2 -1,-0.2 -5,-0.2 -86,-0.1 0.819 360.0 360.0 -63.3 -37.5 6.8 16.0 42.5 97 105 A I 0 0 117 -3,-0.4 -1,-0.2 -60,-0.0 -2,-0.1 0.897 360.0 360.0 -74.9 360.0 5.5 14.7 45.9