==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 20-DEC-07 2VKN . COMPND 2 MOLECULE: PROTEIN SSU81; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR P.KURSULA,I.KURSULA,Y.H.SONG,K.PARASKEVOPOULOS,M.WILMANNS . 75 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5324.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 52.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 194 0, 0.0 34,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-143.9 28.5 -22.3 9.3 2 2 A N + 0 0 59 32,-0.1 63,-0.1 2,-0.0 0, 0.0 0.550 360.0 133.9 -75.4 -7.2 28.5 -23.0 5.6 3 3 A F - 0 0 85 61,-0.1 32,-0.5 1,-0.1 2,-0.4 -0.064 33.2-167.3 -62.6 138.7 26.0 -26.0 5.4 4 4 A I E -A 65 0A 53 61,-2.2 61,-2.0 30,-0.1 2,-0.2 -0.921 8.4-166.4-116.6 147.2 23.1 -26.2 2.8 5 5 A Y E - B 0 33A 56 28,-3.1 28,-2.6 -2,-0.4 2,-0.4 -0.743 18.8-121.5-126.1 167.8 20.3 -28.7 3.1 6 6 A K E -AB 62 32A 89 56,-2.6 55,-3.0 -2,-0.2 56,-1.6 -0.964 28.6-175.1-116.8 133.9 17.6 -30.0 0.9 7 7 A A E -AB 60 31A 0 24,-2.6 24,-2.7 -2,-0.4 2,-0.5 -0.955 16.2-145.3-127.2 147.0 13.9 -29.6 1.9 8 8 A K E -AB 59 30A 84 51,-3.0 51,-2.3 -2,-0.3 2,-0.3 -0.969 26.6-119.4-113.9 129.0 10.6 -30.9 0.3 9 9 A A E -A 58 0A 1 20,-2.5 19,-2.8 -2,-0.5 49,-0.3 -0.510 18.9-167.3 -68.9 128.3 7.5 -28.7 0.5 10 10 A L S S+ 0 0 66 47,-2.9 48,-0.2 -2,-0.3 -1,-0.2 0.701 77.8 6.7 -82.8 -28.9 4.6 -30.5 2.3 11 11 A Y S S- 0 0 53 46,-1.2 -1,-0.2 15,-0.1 17,-0.1 -0.955 88.4 -91.8-145.4 164.0 2.2 -27.8 1.1 12 12 A P - 0 0 65 0, 0.0 2,-0.4 0, 0.0 14,-0.2 -0.430 36.3-157.2 -72.3 154.9 2.2 -24.9 -1.3 13 13 A Y B -F 25 0B 23 12,-2.3 12,-2.0 -2,-0.1 2,-0.6 -0.997 7.9-157.0-133.8 135.5 3.0 -21.4 0.0 14 14 A D - 0 0 132 -2,-0.4 10,-0.1 10,-0.2 2,-0.1 -0.946 17.9-143.7-109.3 107.2 2.0 -18.1 -1.5 15 15 A A - 0 0 23 -2,-0.6 2,-0.1 1,-0.1 9,-0.1 -0.383 22.5-114.5 -60.5 143.3 4.4 -15.3 -0.4 16 16 A D - 0 0 94 3,-0.2 6,-0.2 1,-0.1 -1,-0.1 -0.434 8.2-135.9 -71.7 155.1 2.6 -11.9 0.2 17 17 A D S S+ 0 0 159 1,-0.1 -1,-0.1 -2,-0.1 3,-0.1 0.820 104.4 63.6 -76.4 -30.9 3.6 -9.1 -2.1 18 18 A D S S+ 0 0 151 1,-0.2 2,-0.8 2,-0.1 -1,-0.1 0.845 102.1 48.0 -62.0 -41.0 3.7 -6.9 1.1 19 19 A D S > S- 0 0 47 1,-0.1 3,-1.3 2,-0.0 -1,-0.2 -0.839 76.6-175.2-102.3 94.5 6.6 -8.9 2.6 20 20 A A T 3 + 0 0 84 -2,-0.8 -1,-0.1 1,-0.3 -2,-0.1 0.188 69.0 69.6 -88.2 16.3 8.9 -9.0 -0.4 21 21 A Y T 3 S+ 0 0 195 30,-0.1 31,-2.7 2,-0.1 -1,-0.3 0.525 82.1 90.6-100.3 -13.1 11.7 -11.2 1.1 22 22 A E B < -c 52 0A 15 -3,-1.3 2,-0.3 29,-0.2 31,-0.2 -0.479 63.9-150.5 -78.2 151.6 9.4 -14.3 1.1 23 23 A I - 0 0 11 29,-1.9 2,-0.2 -2,-0.1 -7,-0.1 -0.923 9.3-130.1-119.1 152.1 9.3 -16.7 -1.8 24 24 A S + 0 0 36 -2,-0.3 2,-0.3 -10,-0.1 -10,-0.2 -0.577 28.1 176.8 -88.9 160.5 6.4 -18.9 -3.0 25 25 A F B -F 13 0B 0 -12,-2.0 -12,-2.3 -2,-0.2 2,-0.2 -0.970 24.0-111.4-158.3 168.6 6.7 -22.6 -3.7 26 26 A E > - 0 0 114 -2,-0.3 3,-1.8 -14,-0.2 -17,-0.3 -0.691 41.6 -89.5-104.7 156.1 4.6 -25.7 -4.8 27 27 A Q T 3 S+ 0 0 104 1,-0.3 -17,-0.2 -2,-0.2 3,-0.1 -0.452 115.3 14.9 -64.6 133.5 3.7 -28.8 -2.9 28 28 A N T 3 S+ 0 0 100 -19,-2.8 -1,-0.3 1,-0.3 2,-0.2 0.388 90.7 143.0 78.5 1.0 6.4 -31.5 -3.4 29 29 A E < - 0 0 35 -3,-1.8 -20,-2.5 -18,-0.1 2,-0.5 -0.538 49.4-131.5 -68.2 135.0 8.9 -28.9 -4.8 30 30 A I E -B 8 0A 71 -22,-0.2 16,-0.4 -2,-0.2 2,-0.3 -0.823 29.1-174.5 -90.9 127.4 12.5 -29.6 -3.7 31 31 A L E -B 7 0A 0 -24,-2.7 -24,-2.6 -2,-0.5 2,-0.5 -0.910 26.0-128.9-120.3 144.7 14.3 -26.5 -2.3 32 32 A Q E -BD 6 44A 85 12,-2.1 12,-2.3 -2,-0.3 2,-0.3 -0.851 38.9-176.1 -87.3 131.9 17.8 -25.9 -1.2 33 33 A V E +BD 5 43A 4 -28,-2.6 -28,-3.1 -2,-0.5 2,-0.3 -0.902 15.2 172.6-132.2 155.9 17.8 -24.3 2.2 34 34 A S E + D 0 42A 30 8,-2.1 8,-2.2 -2,-0.3 -30,-0.1 -0.944 57.2 50.2-151.4 173.7 20.2 -22.8 4.8 35 35 A D > + 0 0 84 -32,-0.5 3,-0.6 -2,-0.3 -1,-0.2 0.943 60.2 163.3 55.6 54.3 20.2 -21.0 8.1 36 36 A I T 3 + 0 0 37 1,-0.2 -1,-0.1 5,-0.1 5,-0.1 0.258 41.1 100.0 -90.6 12.1 17.8 -23.6 9.5 37 37 A E T 3 S+ 0 0 152 3,-0.1 -1,-0.2 2,-0.0 2,-0.1 0.749 85.6 39.4 -67.5 -28.1 18.4 -22.6 13.2 38 38 A G S < S- 0 0 42 -3,-0.6 3,-0.0 2,-0.3 17,-0.0 -0.305 97.7 -89.6-112.7-162.4 15.3 -20.6 13.3 39 39 A R S S+ 0 0 189 -2,-0.1 16,-2.4 1,-0.1 2,-0.5 0.790 107.9 55.3 -89.2 -31.9 11.7 -20.6 12.1 40 40 A W E S- E 0 54A 41 14,-0.2 2,-0.3 15,-0.1 -2,-0.3 -0.931 78.0-158.8-103.1 124.0 12.1 -18.8 8.8 41 41 A W E - E 0 53A 25 12,-2.3 12,-2.3 -2,-0.5 2,-0.4 -0.709 20.0-113.4-103.3 154.6 14.7 -20.5 6.5 42 42 A K E -DE 34 52A 104 -8,-2.2 -8,-2.1 -2,-0.3 2,-0.3 -0.720 44.0-174.6 -83.4 132.8 16.7 -19.2 3.5 43 43 A A E -DE 33 51A 7 8,-3.1 8,-1.8 -2,-0.4 2,-0.4 -0.952 23.9-161.6-131.3 152.8 15.7 -21.0 0.3 44 44 A R E -DE 32 50A 110 -12,-2.3 -12,-2.1 -2,-0.3 6,-0.2 -0.994 16.9-147.4-130.5 126.9 16.6 -21.2 -3.3 45 45 A R > - 0 0 28 4,-2.9 3,-1.9 -2,-0.4 -14,-0.1 -0.476 31.0-107.4 -80.6 160.4 14.2 -22.6 -5.9 46 46 A A T 3 S+ 0 0 100 -16,-0.4 -1,-0.1 1,-0.3 -15,-0.1 0.858 120.4 61.2 -53.0 -35.2 15.4 -24.6 -9.0 47 47 A N T 3 S- 0 0 97 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.432 123.4-104.6 -76.0 0.3 14.5 -21.5 -11.1 48 48 A G S < S+ 0 0 45 -3,-1.9 -2,-0.1 1,-0.3 -1,-0.1 0.163 71.6 146.2 96.0 -17.4 17.0 -19.4 -9.2 49 49 A E - 0 0 86 -5,-0.1 -4,-2.9 1,-0.0 2,-0.3 -0.283 28.9-165.3 -54.2 142.2 14.5 -17.5 -7.0 50 50 A T E + E 0 44A 101 -6,-0.2 2,-0.3 -3,-0.1 -6,-0.2 -0.948 27.9 97.2-139.2 141.3 15.8 -16.8 -3.6 51 51 A G E - E 0 43A 16 -8,-1.8 -8,-3.1 -2,-0.3 2,-0.3 -0.984 64.6 -50.6 167.2-167.0 14.2 -15.7 -0.3 52 52 A I E -cE 22 42A 47 -31,-2.7 -29,-1.9 -2,-0.3 -10,-0.2 -0.693 42.5-165.5-102.0 155.5 12.8 -16.8 3.0 53 53 A I E - E 0 41A 0 -12,-2.3 -12,-2.3 -2,-0.3 2,-0.6 -0.958 30.8-104.1-136.6 147.6 10.4 -19.6 3.7 54 54 A P E > - E 0 40A 0 0, 0.0 3,-1.9 0, 0.0 -14,-0.2 -0.678 29.1-148.9 -72.6 117.1 8.1 -20.8 6.6 55 55 A S G > S+ 0 0 22 -16,-2.4 3,-1.1 -2,-0.6 -15,-0.1 0.716 91.8 66.8 -64.1 -23.4 10.0 -23.9 7.9 56 56 A N G 3 S+ 0 0 45 -17,-0.3 -1,-0.3 1,-0.2 -16,-0.1 0.632 93.9 61.2 -71.0 -13.7 6.7 -25.6 9.1 57 57 A Y G < S+ 0 0 21 -3,-1.9 -47,-2.9 -47,-0.1 -46,-1.2 0.460 105.1 52.5 -87.5 -4.8 5.7 -25.9 5.3 58 58 A V E < -A 9 0A 11 -3,-1.1 2,-0.4 -49,-0.3 -49,-0.2 -0.869 65.7-141.3-133.3 161.7 8.7 -28.1 4.5 59 59 A Q E -A 8 0A 107 -51,-2.3 -51,-3.0 -2,-0.3 2,-0.3 -0.992 26.8-119.4-122.4 133.7 10.5 -31.3 5.5 60 60 A L E +A 7 0A 74 -2,-0.4 -53,-0.3 -53,-0.3 3,-0.1 -0.530 37.1 165.7 -68.3 130.4 14.3 -31.8 5.5 61 61 A I E + 0 0 74 -55,-3.0 2,-0.3 1,-0.3 -54,-0.2 0.578 57.9 14.1-126.5 -16.3 15.3 -34.6 3.1 62 62 A D E S+A 6 0A 97 -56,-1.6 -56,-2.6 3,-0.0 -1,-0.3 -0.988 76.1 14.4-156.4 166.4 19.1 -34.2 2.7 63 63 A G E - 0 0 33 1,-0.3 -58,-0.2 -2,-0.3 2,-0.1 -0.504 28.4-158.2 115.1 173.3 22.2 -32.5 4.0 64 64 A P E + 0 0 59 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 0.504 54.7 167.4 -78.6 155.4 24.3 -31.1 5.4 65 65 A E E A 4 0A 132 -61,-2.0 -61,-2.2 1,-0.2 -3,-0.0 -0.990 360.0 360.0-130.6 144.8 26.4 -30.3 2.4 66 66 A E 0 0 152 -2,-0.3 -1,-0.2 -63,-0.2 -62,-0.0 0.848 360.0 360.0 -87.9 360.0 29.4 -27.9 1.9 67 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 68 3 C K 0 0 151 0, 0.0 -29,-0.1 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 135.0 7.7 -12.9 12.6 69 4 C P - 0 0 108 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.417 360.0-108.0 -75.6 155.9 5.2 -15.7 13.4 70 5 C L - 0 0 52 1,-0.1 3,-0.1 -2,-0.1 -30,-0.1 -0.528 38.1-105.4 -75.3 145.9 5.0 -18.7 11.1 71 6 C P - 0 0 22 0, 0.0 -1,-0.1 0, 0.0 -15,-0.1 -0.310 41.1 -96.0 -64.4 153.3 1.8 -19.1 9.0 72 7 C P - 0 0 110 0, 0.0 -16,-0.0 0, 0.0 0, 0.0 -0.411 45.4-104.4 -62.6 147.9 -0.8 -21.6 10.1 73 8 C L - 0 0 82 1,-0.1 3,-0.1 -3,-0.1 -16,-0.1 -0.393 42.1-109.6 -65.5 151.4 -0.5 -24.9 8.3 74 9 C P - 0 0 49 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.282 52.7 -57.6 -75.4 171.7 -3.0 -25.4 5.6 75 10 C L 0 0 161 1,-0.1 0, 0.0 -2,-0.0 0, 0.0 -0.190 360.0 360.0 -37.4 128.9 -5.9 -27.8 5.8 76 11 C A 0 0 133 -3,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.898 360.0 360.0 -89.6 360.0 -4.8 -31.5 6.3