==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JUL-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 09-NOV-11 3VK6 . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HAKAI; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.SIVARAMAN,M.MUKHERJEE . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8125.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 15.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 19.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A V 0 0 147 0, 0.0 2,-0.5 0, 0.0 11,-0.1 0.000 360.0 360.0 360.0 104.8 -13.7 -32.6 29.8 2 2 A H - 0 0 102 9,-0.5 9,-3.6 7,-0.0 2,-0.4 -0.985 360.0-147.5-119.9 121.5 -12.9 -30.4 26.9 3 3 A F B -A 10 0A 117 -2,-0.5 2,-0.3 7,-0.3 6,-0.1 -0.730 18.4-120.4 -90.0 137.1 -11.5 -31.9 23.7 4 4 A C > - 0 0 10 5,-2.8 4,-1.2 -2,-0.4 20,-0.0 -0.574 12.0-152.0 -72.6 131.1 -9.1 -30.0 21.5 5 5 A D T 4 S+ 0 0 144 -2,-0.3 -1,-0.1 2,-0.2 -2,-0.0 0.458 93.1 49.1 -84.9 -0.4 -10.5 -29.6 17.9 6 6 A K T 4 S+ 0 0 150 3,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.853 128.2 15.8 -95.4 -59.7 -6.9 -29.4 16.5 7 7 A C T 4 S- 0 0 62 2,-0.2 -2,-0.2 0, 0.0 -4,-0.0 0.687 94.2-130.7 -91.5 -22.2 -5.2 -32.4 18.1 8 8 A G < + 0 0 44 -4,-1.2 -3,-0.1 1,-0.3 3,-0.0 0.456 64.0 121.4 87.3 1.8 -8.4 -34.3 19.2 9 9 A L S S- 0 0 115 -6,-0.1 -5,-2.8 1,-0.1 -1,-0.3 -0.679 72.0 -95.3-101.3 152.9 -7.2 -34.9 22.8 10 10 A P B -A 3 0A 67 0, 0.0 2,-0.5 0, 0.0 -7,-0.3 -0.398 43.9-123.4 -63.1 136.2 -8.8 -33.9 26.1 11 11 A I + 0 0 11 -9,-3.6 -9,-0.5 1,-0.2 3,-0.1 -0.721 41.8 159.4 -90.6 128.5 -7.3 -30.7 27.4 12 12 A K S S+ 0 0 118 -2,-0.5 43,-1.3 1,-0.3 2,-0.4 0.615 72.9 39.7-113.3 -27.1 -5.8 -30.6 30.8 13 13 A V E S-B 54 0B 31 41,-0.2 13,-2.4 42,-0.1 14,-0.4 -0.991 74.7-155.2-125.4 131.0 -3.5 -27.6 30.4 14 14 A Y E -BC 53 25B 37 39,-3.5 39,-2.3 -2,-0.4 2,-0.5 -0.721 12.3-138.7-103.0 151.9 -4.6 -24.4 28.5 15 15 A G E -BC 52 24B 0 9,-3.1 9,-2.1 -2,-0.3 2,-0.5 -0.939 19.6-155.3-100.8 127.3 -2.6 -21.7 26.7 16 16 A R E -BC 51 23B 59 35,-2.7 35,-2.7 -2,-0.5 2,-0.3 -0.918 14.0-133.4-105.6 122.7 -4.1 -18.3 27.4 17 17 A M E > -B 50 0B 6 5,-3.0 4,-2.1 -2,-0.5 33,-0.2 -0.590 26.3-115.1 -76.8 134.3 -3.3 -15.7 24.8 18 18 A I E 4 S+B 49 0B 16 31,-2.3 30,-2.9 -2,-0.3 31,-1.2 -0.973 87.4 2.4-112.1 130.9 -2.1 -12.3 26.0 19 19 A P T 4 S+ 0 0 52 0, 0.0 -1,-0.2 0, 0.0 28,-0.1 -0.978 129.1 52.5-103.8 4.7 -3.6 -9.8 25.6 20 20 A C T 4 S- 0 0 25 26,-0.3 -2,-0.2 1,-0.1 27,-0.1 0.721 88.8-143.7 -73.0 -19.8 -6.8 -11.0 23.9 21 21 A K < + 0 0 121 -4,-2.1 -3,-0.1 1,-0.2 2,-0.1 0.523 45.9 143.5 72.3 10.7 -7.4 -13.6 26.7 22 22 A H - 0 0 84 -6,-0.1 -5,-3.0 -5,-0.1 2,-0.3 -0.444 39.0-139.9 -71.0 153.6 -8.8 -16.4 24.6 23 23 A V E +C 16 0B 34 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.915 24.5 166.1-124.4 151.1 -7.7 -20.0 25.5 24 24 A F E -C 15 0B 55 -9,-2.1 -9,-3.1 -2,-0.3 -20,-0.1 -0.935 52.8 -58.0-149.1 165.4 -6.8 -23.1 23.6 25 25 A C E > -C 14 0B 9 -2,-0.3 4,-2.3 -11,-0.2 -11,-0.2 -0.268 51.6-137.0 -45.1 125.7 -5.2 -26.5 24.1 26 26 A Y H > S+ 0 0 52 -13,-2.4 4,-2.7 1,-0.2 5,-0.2 0.917 98.4 50.9 -61.8 -44.6 -1.8 -25.6 25.5 27 27 A D H > S+ 0 0 100 -14,-0.4 4,-2.7 1,-0.2 -1,-0.2 0.916 113.3 45.2 -62.4 -42.4 0.2 -28.1 23.4 28 28 A C H > S+ 0 0 28 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.889 110.3 54.5 -69.1 -39.2 -1.3 -26.9 20.2 29 29 A A H X S+ 0 0 7 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.951 112.7 43.4 -55.5 -50.9 -0.9 -23.2 21.2 30 30 A I H X S+ 0 0 52 -4,-2.7 4,-3.3 2,-0.2 5,-0.3 0.956 112.7 51.9 -60.7 -51.1 2.9 -23.8 21.7 31 31 A L H X S+ 0 0 97 -4,-2.7 4,-1.3 1,-0.2 -1,-0.2 0.921 110.8 48.8 -49.0 -49.8 3.2 -25.9 18.5 32 32 A H H <>S+ 0 0 60 -4,-2.8 5,-1.9 1,-0.2 4,-0.3 0.899 111.9 49.4 -56.8 -44.4 1.5 -23.0 16.6 33 33 A E H ><5S+ 0 0 92 -4,-2.3 3,-1.7 1,-0.2 -2,-0.2 0.913 106.1 55.6 -63.4 -44.9 3.9 -20.6 18.3 34 34 A K H 3<5S+ 0 0 179 -4,-3.3 -1,-0.2 1,-0.3 -2,-0.2 0.803 102.6 58.3 -54.9 -31.8 7.0 -22.7 17.4 35 35 A K T 3<5S- 0 0 137 -4,-1.3 -1,-0.3 -3,-0.3 -2,-0.2 0.566 124.9-101.6 -80.2 -9.3 5.8 -22.5 13.8 36 36 A G T < 5S+ 0 0 50 -3,-1.7 2,-0.4 -4,-0.3 -3,-0.2 0.466 70.8 147.7 104.2 5.1 6.1 -18.7 13.9 37 37 A D < + 0 0 65 -5,-1.9 -1,-0.3 1,-0.1 -2,-0.1 -0.603 18.1 173.6 -79.9 125.8 2.4 -17.9 14.2 38 38 A K + 0 0 161 -2,-0.4 9,-2.6 2,-0.1 2,-0.4 0.146 49.9 91.7-118.5 17.4 1.8 -14.8 16.2 39 39 A M B S-D 46 0C 91 7,-0.2 6,-0.1 9,-0.0 -2,-0.0 -0.880 83.9-105.1-113.9 145.0 -1.9 -14.4 15.8 40 40 A C > - 0 0 1 5,-2.7 4,-1.7 -2,-0.4 -2,-0.1 -0.489 25.6-137.6 -65.1 131.5 -4.6 -15.8 18.1 41 41 A P T 4 S+ 0 0 32 0, 0.0 -1,-0.1 0, 0.0 46,-0.0 0.698 98.8 40.8 -66.8 -17.8 -6.2 -18.9 16.4 42 42 A G T 4 S+ 0 0 10 3,-0.1 45,-0.4 46,-0.1 -2,-0.0 0.810 133.9 10.9 -99.7 -38.1 -9.7 -17.8 17.4 43 43 A C T 4 S- 0 0 20 2,-0.1 45,-0.1 43,-0.1 43,-0.0 0.509 88.4-129.0-120.2 -10.3 -9.9 -14.0 16.9 44 44 A S < + 0 0 7 -4,-1.7 3,-0.1 1,-0.2 40,-0.1 0.438 54.6 146.9 72.2 2.7 -6.6 -13.3 15.0 45 45 A D - 0 0 64 -6,-0.1 -5,-2.7 1,-0.1 -1,-0.2 -0.309 61.4 -89.9 -60.3 151.9 -5.4 -10.5 17.3 46 46 A P B -D 39 0C 92 0, 0.0 2,-0.5 0, 0.0 -26,-0.3 -0.380 40.9-139.3 -55.7 142.3 -1.6 -10.3 17.7 47 47 A V - 0 0 24 -9,-2.6 3,-0.1 1,-0.2 -30,-0.0 -0.959 19.6-175.0-113.4 121.3 -0.4 -12.4 20.6 48 48 A Q S S- 0 0 140 -30,-2.9 2,-0.3 -2,-0.5 -1,-0.2 0.897 71.3 -22.5 -75.9 -46.4 2.4 -11.0 22.9 49 49 A R E -B 18 0B 131 -31,-1.2 -31,-2.3 -33,-0.1 2,-0.5 -0.983 59.0-116.7-159.4 165.3 2.8 -14.2 24.9 50 50 A I E -B 17 0B 33 -2,-0.3 2,-0.3 -33,-0.2 -33,-0.2 -0.955 23.6-152.8-114.1 125.9 1.1 -17.4 25.9 51 51 A E E -B 16 0B 63 -35,-2.7 -35,-2.7 -2,-0.5 2,-0.4 -0.758 15.0-129.1 -94.0 140.6 0.3 -18.2 29.6 52 52 A Q E +B 15 0B 124 -2,-0.3 2,-0.4 -37,-0.2 -37,-0.2 -0.750 34.1 176.2 -90.0 134.5 0.1 -21.7 30.9 53 53 A C E -B 14 0B 12 -39,-2.3 -39,-3.5 -2,-0.4 2,-0.2 -0.998 26.7-129.8-145.2 131.0 -3.1 -22.3 32.9 54 54 A T E > -B 13 0B 83 -2,-0.4 3,-2.0 -41,-0.2 4,-0.2 -0.521 37.0-104.3 -81.7 155.4 -4.7 -25.3 34.5 55 55 A R G > S+ 0 0 140 -43,-1.3 3,-0.8 1,-0.3 -1,-0.1 0.826 114.9 46.0 -47.2 -48.1 -8.3 -26.2 33.7 56 56 A G G 3 S+ 0 0 81 1,-0.2 -1,-0.3 3,-0.0 -2,-0.0 0.311 94.6 75.7 -87.8 10.5 -9.8 -24.9 37.0 57 57 A S G < S+ 0 0 59 -3,-2.0 2,-0.3 2,-0.0 -1,-0.2 0.427 79.9 87.5 -98.2 2.4 -8.0 -21.6 37.3 58 58 A L < - 0 0 62 -3,-0.8 2,-0.5 -4,-0.2 -5,-0.0 -0.779 54.1-158.7-114.7 147.6 -10.0 -19.7 34.7 59 59 A F - 0 0 203 -2,-0.3 2,-0.3 2,-0.0 -3,-0.0 -0.958 23.6-158.0-119.9 109.3 -13.2 -17.6 34.6 60 60 A M - 0 0 155 -2,-0.5 2,-0.5 2,-0.0 -38,-0.0 -0.678 14.3-130.8 -96.3 138.0 -14.6 -17.4 31.1 61 61 A C - 0 0 101 -2,-0.3 -1,-0.0 1,-0.1 -2,-0.0 -0.748 23.7-179.9 -81.3 125.2 -17.0 -14.8 29.8 62 62 A S + 0 0 103 -2,-0.5 2,-0.2 2,-0.1 -1,-0.1 0.105 27.8 139.3-112.5 21.3 -19.9 -16.5 28.0 63 63 A I - 0 0 119 1,-0.0 2,-0.5 2,-0.0 -2,-0.0 -0.502 40.1-152.1 -69.8 134.4 -21.9 -13.4 26.9 64 64 A V + 0 0 113 -2,-0.2 2,-0.3 0, 0.0 -2,-0.1 -0.954 30.1 149.3-111.7 113.6 -23.3 -13.8 23.4 65 65 A Q - 0 0 169 -2,-0.5 2,-0.1 0, 0.0 -2,-0.0 -0.934 47.6 -89.2-137.3 165.2 -23.8 -10.5 21.5 66 66 A G - 0 0 54 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.365 27.6-132.5 -71.4 154.8 -23.7 -9.2 17.9 67 67 A C + 0 0 60 1,-0.1 -1,-0.1 -2,-0.1 0, 0.0 0.970 28.4 179.7 -69.8 -59.7 -20.4 -7.9 16.4 68 68 A K + 0 0 185 1,-0.2 2,-0.1 0, 0.0 -1,-0.1 0.511 22.4 146.5 67.9 8.5 -21.8 -4.7 14.9 69 69 A R - 0 0 176 8,-0.0 2,-0.3 1,-0.0 -1,-0.2 -0.503 39.9-136.9 -69.1 149.0 -18.5 -3.5 13.4 70 70 A T - 0 0 126 -2,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.844 17.0-165.3-117.5 150.8 -18.9 -1.6 10.2 71 71 A Y - 0 0 81 -2,-0.3 3,-0.1 1,-0.1 4,-0.0 -0.879 24.8-134.0-133.4 157.0 -17.1 -1.7 6.9 72 72 A L S S+ 0 0 177 -2,-0.3 2,-0.3 1,-0.1 3,-0.1 0.577 90.9 30.3 -90.6 -11.4 -17.1 0.7 3.8 73 73 A S S > S- 0 0 48 1,-0.1 4,-2.1 0, 0.0 5,-0.1 -0.985 74.9-123.9-144.1 154.9 -17.4 -2.2 1.3 74 74 A Q H > S+ 0 0 132 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.900 115.2 57.8 -63.0 -39.2 -19.0 -5.6 1.2 75 75 A R H > S+ 0 0 208 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.889 106.3 47.4 -55.7 -43.6 -15.6 -6.9 0.2 76 76 A D H > S+ 0 0 82 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.881 110.5 52.3 -68.3 -37.0 -14.1 -5.4 3.4 77 77 A L H X S+ 0 0 57 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.915 110.0 48.9 -63.4 -42.1 -16.9 -6.9 5.5 78 78 A Q H X S+ 0 0 85 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.916 109.9 50.9 -64.3 -41.6 -16.2 -10.3 4.0 79 79 A A H X S+ 0 0 54 -4,-2.3 4,-1.6 1,-0.2 -1,-0.2 0.897 109.8 51.5 -62.0 -39.0 -12.5 -10.0 4.7 80 80 A H H X S+ 0 0 16 -4,-2.3 4,-2.6 2,-0.2 5,-0.3 0.902 109.5 49.3 -60.4 -45.0 -13.4 -9.1 8.3 81 81 A I H X>S+ 0 0 49 -4,-2.2 4,-2.1 1,-0.2 5,-0.6 0.912 112.4 47.7 -62.1 -44.4 -15.6 -12.2 8.6 82 82 A N H <5S+ 0 0 93 -4,-2.5 4,-0.2 1,-0.2 -1,-0.2 0.815 118.5 42.2 -64.1 -30.4 -12.9 -14.4 7.2 83 83 A H H <5S+ 0 0 75 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.813 128.5 22.4 -87.1 -34.7 -10.3 -12.9 9.6 84 84 A R H <5S+ 0 0 82 -4,-2.6 -3,-0.2 -5,-0.1 -2,-0.2 0.680 123.6 36.0-110.2 -24.7 -12.3 -12.7 12.8 85 85 A H T ><5S+ 0 0 67 -4,-2.1 3,-1.0 -5,-0.3 -3,-0.2 0.521 83.3 87.3-118.5 -7.6 -15.2 -15.2 12.8 86 86 A M T 3