==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 20-SEP-04 1VMC . COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.K.GOZANSKY,G.M.CLORE . 61 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5290.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 24.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 21.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A R 0 0 281 0, 0.0 25,-0.1 0, 0.0 26,-0.1 0.000 360.0 360.0 360.0 135.1 39.0 10.2 -3.3 2 9 A a - 0 0 54 1,-0.1 25,-0.0 2,-0.1 0, 0.0 -0.627 360.0-121.9 -87.8 148.4 41.6 11.1 -6.0 3 10 A P S S+ 0 0 58 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.837 102.2 39.2 -57.3 -30.4 45.4 11.0 -5.0 4 11 A b - 0 0 3 1,-0.2 3,-0.1 28,-0.0 -2,-0.1 -0.965 58.3-179.7-124.1 137.8 45.6 14.7 -6.0 5 12 A R S S+ 0 0 208 -2,-0.4 2,-0.4 1,-0.4 -1,-0.2 0.876 76.4 18.9 -97.8 -64.0 43.0 17.4 -5.3 6 13 A F S S- 0 0 181 39,-0.0 2,-0.4 2,-0.0 -1,-0.4 -0.862 73.8-145.9-108.9 142.6 44.5 20.6 -6.8 7 14 A F - 0 0 79 -2,-0.4 2,-0.5 -3,-0.1 37,-0.2 -0.859 8.7-139.3-107.9 141.6 47.3 20.5 -9.4 8 15 A E B -a 44 0A 96 35,-2.0 37,-2.0 -2,-0.4 3,-0.3 -0.841 17.8-178.8-101.7 133.0 50.1 23.2 -9.6 9 16 A S S S+ 0 0 58 -2,-0.5 -1,-0.1 35,-0.2 35,-0.1 0.386 76.6 69.8-106.0 -0.3 51.2 24.4 -13.0 10 17 A H S S+ 0 0 168 2,-0.0 2,-0.3 38,-0.0 -1,-0.2 -0.075 74.5 109.2-108.2 34.5 53.9 26.8 -11.6 11 18 A V - 0 0 15 -3,-0.3 2,-0.3 34,-0.1 3,-0.0 -0.850 48.4-161.9-110.3 147.1 56.3 24.1 -10.4 12 19 A A >> - 0 0 54 -2,-0.3 3,-1.1 1,-0.1 4,-0.6 -0.820 32.0-111.5-123.4 163.5 59.7 23.3 -12.0 13 20 A R G >4 S+ 0 0 127 -2,-0.3 3,-1.9 1,-0.2 -1,-0.1 0.920 113.8 65.1 -62.3 -41.6 62.0 20.2 -11.7 14 21 A A G 34 S+ 0 0 98 1,-0.3 -1,-0.2 21,-0.0 -3,-0.0 0.790 107.5 43.6 -53.6 -23.9 64.7 22.2 -9.8 15 22 A N G <4 S+ 0 0 44 -3,-1.1 21,-3.2 21,-0.1 22,-0.4 0.542 106.4 74.6 -98.5 -7.2 62.0 22.4 -7.0 16 23 A V E << -B 35 0A 9 -3,-1.9 19,-0.2 -4,-0.6 3,-0.1 -0.825 56.8-166.7-106.2 144.5 60.9 18.8 -7.3 17 24 A K E S- 0 0 136 17,-1.7 2,-0.3 1,-0.4 -1,-0.1 0.831 73.5 -9.6 -96.7 -39.1 63.0 15.8 -6.0 18 25 A H E - 0 0 72 16,-0.4 16,-0.9 2,-0.0 2,-0.4 -0.996 60.7-130.4-156.8 154.7 61.1 13.0 -7.8 19 26 A L E -B 33 0A 20 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.907 16.0-156.6-110.9 135.0 57.9 12.4 -9.8 20 27 A K E -B 32 0A 121 12,-2.7 12,-1.9 -2,-0.4 2,-0.4 -0.932 8.7-148.0-112.9 126.1 55.4 9.6 -8.9 21 28 A I E -B 31 0A 66 -2,-0.5 2,-0.4 10,-0.2 10,-0.2 -0.764 13.7-173.7 -94.1 135.5 53.0 8.3 -11.7 22 29 A L E -B 30 0A 41 8,-1.8 8,-2.0 -2,-0.4 2,-1.2 -0.964 13.4-161.7-130.7 118.8 49.6 7.1 -10.7 23 30 A N E +B 29 0A 132 -2,-0.4 6,-0.2 6,-0.2 -2,-0.0 -0.652 24.5 167.7 -98.5 79.8 47.2 5.4 -13.2 24 31 A T E >> -B 28 0A 31 4,-1.4 4,-2.5 -2,-1.2 3,-1.7 -0.826 27.1-162.9 -98.0 110.8 43.9 5.7 -11.4 25 32 A P T 34 S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.490 91.4 64.4 -69.0 2.6 40.8 5.0 -13.6 26 33 A N T 34 S+ 0 0 152 2,-0.2 -24,-0.1 -25,-0.1 -2,-0.0 0.642 125.4 9.3 -97.3 -18.1 38.8 6.7 -10.9 27 34 A a T <4 S- 0 0 32 -3,-1.7 2,-0.2 1,-0.3 -25,-0.1 0.320 105.2-123.2-139.1 -0.3 40.5 10.1 -11.5 28 35 A A E < -B 24 0A 66 -4,-2.5 -4,-1.4 2,-0.1 2,-0.5 -0.528 65.8 -15.3 85.7-154.2 42.5 9.4 -14.7 29 36 A L E S+B 23 0A 81 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.720 70.2 170.8 -87.3 129.7 46.3 10.0 -14.8 30 37 A Q E -B 22 0A 12 -8,-2.0 -8,-1.8 -2,-0.5 2,-0.4 -0.989 18.4-154.0-138.0 146.3 47.7 12.0 -11.9 31 38 A I E -BC 21 44A 2 13,-0.6 13,-1.7 -2,-0.3 2,-0.4 -0.972 4.6-159.4-123.9 133.8 51.3 12.7 -10.9 32 39 A V E +BC 20 43A 8 -12,-1.9 -12,-2.7 -2,-0.4 2,-0.3 -0.895 13.4 178.4-112.1 139.0 52.5 13.6 -7.3 33 40 A A E -BC 19 42A 0 9,-2.8 9,-2.7 -2,-0.4 2,-0.4 -0.962 21.3-131.6-137.3 154.7 55.8 15.3 -6.7 34 41 A R E - C 0 41A 117 -16,-0.9 -17,-1.7 -2,-0.3 2,-0.4 -0.887 24.1-117.6-111.1 138.8 57.6 16.6 -3.5 35 42 A L E >> -BC 16 40A 32 5,-1.1 4,-1.6 -2,-0.4 5,-0.5 -0.571 15.9-150.8 -74.4 125.3 59.1 20.0 -3.1 36 43 A K T 45S+ 0 0 131 -21,-3.2 -1,-0.2 -2,-0.4 -20,-0.1 0.869 90.1 63.9 -64.5 -35.2 62.9 19.7 -2.5 37 44 A N T 45S+ 0 0 119 -22,-0.4 -1,-0.2 1,-0.2 -21,-0.0 0.984 127.8 5.0 -53.3 -72.2 62.9 22.9 -0.5 38 45 A N T 45S- 0 0 109 2,-0.0 -1,-0.2 0, 0.0 -2,-0.2 0.377 97.2-121.8 -96.6 5.5 60.7 21.8 2.5 39 46 A N T <5 + 0 0 112 -4,-1.6 -3,-0.2 1,-0.1 -2,-0.1 0.837 59.2 157.6 59.8 29.7 60.3 18.1 1.3 40 47 A R E < - C 0 35A 156 -5,-0.5 -5,-1.1 1,-0.1 2,-0.6 -0.242 47.0-112.4 -78.1 175.1 56.6 18.7 1.2 41 48 A Q E + C 0 34A 139 -7,-0.2 2,-0.3 -9,-0.0 -7,-0.2 -0.928 44.8 164.8-112.4 112.1 54.1 16.6 -0.9 42 49 A V E - C 0 33A 24 -9,-2.7 -9,-2.8 -2,-0.6 2,-0.4 -0.890 34.1-121.9-125.5 157.1 52.5 18.6 -3.7 43 50 A b E - C 0 32A 21 -37,-0.3 -35,-2.0 -2,-0.3 2,-0.4 -0.829 23.6-153.8-101.0 134.9 50.5 17.5 -6.8 44 51 A I E -aC 8 31A 0 -13,-1.7 -13,-0.6 -2,-0.4 -35,-0.2 -0.889 22.6-112.7-111.6 138.2 51.9 18.6 -10.2 45 52 A D > - 0 0 41 -37,-2.0 3,-1.8 -2,-0.4 6,-0.1 -0.507 20.2-139.1 -67.6 122.6 49.7 19.1 -13.3 46 53 A P T 3 S+ 0 0 45 0, 0.0 -1,-0.2 0, 0.0 -37,-0.0 0.370 93.8 77.5 -66.4 11.6 50.7 16.3 -15.9 47 54 A K T 3 + 0 0 178 4,-0.1 2,-0.1 5,-0.0 -2,-0.1 0.510 64.3 110.1 -99.4 -3.6 50.4 19.0 -18.6 48 55 A L <> - 0 0 30 -3,-1.8 4,-1.3 1,-0.1 3,-0.3 -0.464 68.4-136.4 -71.6 140.5 53.7 20.7 -17.9 49 56 A K H > S+ 0 0 174 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.913 101.8 58.0 -65.6 -42.1 56.3 20.1 -20.7 50 57 A W H > S+ 0 0 47 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.838 102.6 58.0 -61.7 -24.2 59.2 19.4 -18.3 51 58 A I H > S+ 0 0 2 -3,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.944 105.2 48.0 -68.6 -45.2 57.1 16.6 -16.9 52 59 A Q H X S+ 0 0 136 -4,-1.3 4,-2.1 1,-0.2 -2,-0.2 0.923 110.3 52.2 -62.8 -39.9 56.8 14.9 -20.3 53 60 A E H X S+ 0 0 106 -4,-2.2 4,-2.5 1,-0.2 5,-0.2 0.922 106.7 53.6 -62.8 -39.8 60.5 15.3 -20.9 54 61 A Y H X S+ 0 0 70 -4,-2.0 4,-1.2 1,-0.2 -1,-0.2 0.930 111.2 45.4 -61.3 -41.7 61.1 13.6 -17.5 55 62 A L H X S+ 0 0 47 -4,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.837 111.6 53.1 -70.5 -31.2 59.0 10.6 -18.6 56 63 A E H X S+ 0 0 120 -4,-2.1 4,-1.7 -5,-0.2 5,-0.3 0.891 110.9 45.6 -72.3 -37.1 60.7 10.6 -22.0 57 64 A K H X S+ 0 0 139 -4,-2.5 4,-0.6 1,-0.2 -1,-0.2 0.734 115.7 47.6 -78.1 -20.1 64.2 10.4 -20.3 58 65 A A H < S+ 0 0 57 -4,-1.2 -2,-0.2 -5,-0.2 -1,-0.2 0.705 112.9 48.1 -92.0 -21.1 62.9 7.7 -17.9 59 66 A L H < S+ 0 0 137 -4,-1.4 -2,-0.2 -5,-0.2 -3,-0.2 0.914 114.5 41.1 -86.0 -46.5 61.2 5.5 -20.6 60 67 A N H < 0 0 137 -4,-1.7 -3,-0.1 1,-0.3 -2,-0.1 0.898 360.0 360.0 -70.2 -35.7 64.0 5.3 -23.2 61 68 A K < 0 0 234 -4,-0.6 -1,-0.3 -5,-0.3 -4,-0.1 -0.182 360.0 360.0 -77.5 360.0 66.7 4.9 -20.5