==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIVIRAL PROTEIN 25-MAR-99 1VMP . COMPND 2 MOLECULE: PROTEIN (ANTI-HIV CHEMOKINE MIP VII); . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; . AUTHOR A.C.LIWANG,Z.-X.WANG,Y.SUN,S.C.PEIPER,P.J.LIWANG . 71 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5557.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 54.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 18.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A L 0 0 231 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 115.2 24.7 -3.4 13.4 2 5 A G > + 0 0 44 0, 0.0 2,-3.2 0, 0.0 3,-0.5 -0.999 360.0 11.5 140.3-138.8 24.0 -5.2 10.1 3 6 A A T 3 S+ 0 0 76 -2,-0.4 0, 0.0 1,-0.2 0, 0.0 -0.298 77.2 135.9 -72.2 63.7 21.8 -4.4 7.1 4 7 A S T 3 + 0 0 89 -2,-3.2 -1,-0.2 1,-0.2 0, 0.0 0.812 69.4 53.1 -81.8 -29.2 21.2 -0.8 8.5 5 8 A W S < S+ 0 0 201 -3,-0.5 2,-1.4 1,-0.1 -1,-0.2 0.649 89.5 88.3 -79.5 -12.6 21.7 0.7 5.0 6 9 A H - 0 0 121 -4,-0.1 -1,-0.1 2,-0.0 -3,-0.0 -0.653 69.3-165.8 -87.7 89.9 19.1 -1.6 3.6 7 10 A R - 0 0 170 -2,-1.4 2,-0.7 1,-0.1 -2,-0.1 -0.407 35.3 -89.0 -74.1 153.5 15.9 0.4 4.2 8 11 A P - 0 0 103 0, 0.0 2,-1.8 0, 0.0 -1,-0.1 -0.468 36.0-150.5 -65.1 106.6 12.5 -1.4 3.9 9 12 A D + 0 0 84 -2,-0.7 22,-0.0 1,-0.2 -3,-0.0 -0.557 28.5 164.7 -80.9 84.2 11.5 -1.1 0.2 10 13 A K + 0 0 104 -2,-1.8 2,-0.3 20,-0.1 -1,-0.2 0.171 40.2 114.1 -86.5 21.6 7.7 -1.1 0.7 11 14 A a - 0 0 36 20,-0.1 2,-0.3 40,-0.0 3,-0.0 -0.649 56.1-146.8 -92.0 149.9 7.4 0.2 -2.9 12 15 A b - 0 0 30 -2,-0.3 25,-0.2 25,-0.2 24,-0.2 -0.781 18.5-126.4-114.0 159.9 5.7 -1.9 -5.6 13 16 A L S S+ 0 0 181 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.902 92.4 1.7 -72.1 -39.0 6.5 -2.1 -9.3 14 17 A G S S- 0 0 51 -3,-0.0 2,-0.2 38,-0.0 -1,-0.2 -0.981 73.2-119.7-146.0 157.7 2.9 -1.4 -10.3 15 18 A Y - 0 0 47 -2,-0.3 2,-0.4 -3,-0.1 37,-0.3 -0.642 39.9 -95.1 -97.1 157.1 -0.5 -0.7 -8.6 16 19 A Q - 0 0 73 35,-2.7 37,-0.2 -2,-0.2 4,-0.1 -0.539 28.4-163.5 -72.0 126.5 -3.6 -2.9 -8.9 17 20 A K + 0 0 199 -2,-0.4 -1,-0.2 2,-0.1 35,-0.0 0.778 66.5 87.7 -81.1 -26.4 -5.9 -1.5 -11.7 18 21 A R S S- 0 0 192 1,-0.1 2,-0.6 0, 0.0 -2,-0.0 -0.527 88.5-113.1 -75.8 139.4 -8.9 -3.5 -10.4 19 22 A P - 0 0 104 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.579 31.8-137.5 -73.7 114.3 -11.1 -1.8 -7.7 20 23 A L - 0 0 18 -2,-0.6 2,-2.4 -4,-0.1 3,-0.1 -0.373 27.6-100.6 -70.1 153.8 -10.7 -3.8 -4.4 21 24 A P > - 0 0 78 0, 0.0 3,-4.1 0, 0.0 4,-0.5 -0.475 37.6-144.4 -74.0 76.5 -13.9 -4.5 -2.4 22 25 A Q G > S+ 0 0 63 -2,-2.4 3,-1.8 1,-0.3 -2,-0.1 0.635 96.6 56.4 -9.5 -57.4 -13.0 -1.6 0.1 23 26 A V G 3 S+ 0 0 99 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.895 94.7 66.7 -52.8 -42.4 -14.5 -3.7 3.0 24 27 A L G < S+ 0 0 73 -3,-4.1 21,-1.6 20,-0.1 22,-0.3 0.771 90.2 78.9 -54.0 -24.6 -12.1 -6.6 2.2 25 28 A L E < -A 44 0A 6 -3,-1.8 19,-0.3 -4,-0.5 3,-0.1 -0.579 56.7-173.4 -86.7 151.1 -9.2 -4.4 3.2 26 29 A S E - 0 0 52 17,-3.6 2,-0.3 1,-0.4 18,-0.2 0.616 66.6 -11.6-115.2 -22.2 -8.4 -3.9 7.0 27 30 A S E -A 43 0A 16 16,-1.1 16,-2.8 39,-0.2 -1,-0.4 -0.983 56.6-134.5-167.3 169.9 -5.7 -1.2 6.8 28 31 A W E -A 42 0A 38 39,-2.5 14,-0.2 -2,-0.3 41,-0.2 -0.920 9.2-156.2-142.9 117.9 -3.3 0.6 4.4 29 32 A Y E -A 41 0A 23 12,-1.8 12,-1.6 -2,-0.4 2,-0.4 -0.744 29.1-114.7 -92.9 139.0 0.4 1.3 4.9 30 33 A P E -A 40 0A 84 0, 0.0 2,-0.4 0, 0.0 10,-0.3 -0.552 21.0-139.9 -73.8 124.2 1.9 4.3 3.0 31 34 A T E -A 39 0A 6 8,-4.2 8,-1.1 -2,-0.4 23,-0.1 -0.694 36.4 -98.9 -84.2 130.1 4.5 3.4 0.3 32 35 A S > - 0 0 54 -2,-0.4 3,-1.6 1,-0.2 5,-0.2 -0.204 20.3-142.4 -51.4 128.3 7.4 5.9 0.3 33 36 A Q T 3 S+ 0 0 144 1,-0.3 -1,-0.2 5,-0.1 -2,-0.0 0.526 96.0 77.6 -70.1 -2.3 7.0 8.5 -2.4 34 37 A L T 3 S+ 0 0 157 3,-0.1 -1,-0.3 0, 0.0 -2,-0.1 0.728 84.6 72.3 -80.5 -19.5 10.8 8.3 -2.8 35 38 A a S < S- 0 0 42 -3,-1.6 -26,-0.0 2,-0.2 -2,-0.0 0.283 121.6 -59.8 -72.4-151.9 10.4 5.0 -4.7 36 39 A S S S- 0 0 87 1,-0.2 -3,-0.1 -24,-0.2 -23,-0.1 0.968 117.2 -13.9 -61.5 -50.4 9.1 5.0 -8.2 37 40 A K S S- 0 0 122 -25,-0.2 2,-0.2 -5,-0.2 -1,-0.2 -0.989 79.6 -89.5-149.8 158.2 5.7 6.6 -7.2 38 41 A P + 0 0 28 0, 0.0 16,-1.0 0, 0.0 17,-0.6 -0.488 59.5 157.5 -68.4 127.4 3.7 7.3 -4.0 39 42 A G E -AB 31 53A 2 -8,-1.1 -8,-4.2 14,-0.3 2,-0.4 -0.942 37.4-138.7-148.1 171.3 1.5 4.4 -3.2 40 43 A V E -A 30 0A 0 12,-3.6 12,-0.5 -2,-0.3 2,-0.4 -0.947 15.1-151.2-136.7 115.4 -0.5 2.7 -0.4 41 44 A I E -A 29 0A 3 -12,-1.6 -12,-1.8 -2,-0.4 2,-0.4 -0.698 18.3-138.5 -87.2 134.6 -0.5 -1.1 -0.1 42 45 A F E -AC 28 50A 0 8,-2.5 8,-0.9 -2,-0.4 2,-0.7 -0.751 2.1-143.8 -96.9 141.3 -3.7 -2.5 1.5 43 46 A L E -AC 27 49A 24 -16,-2.8 -17,-3.6 -2,-0.4 -16,-1.1 -0.874 19.2-154.9-101.5 114.7 -3.7 -5.3 4.1 44 47 A T E > -A 25 0A 7 4,-1.6 3,-3.0 -2,-0.7 -19,-0.2 -0.376 37.6 -96.5 -83.2 168.4 -6.8 -7.5 3.7 45 48 A K T 3 S+ 0 0 150 -21,-1.6 -1,-0.1 1,-0.3 -20,-0.1 0.653 129.6 57.9 -58.7 -9.2 -8.3 -9.6 6.5 46 49 A R T 3 S- 0 0 169 -22,-0.3 -1,-0.3 2,-0.1 -21,-0.1 0.517 118.7-112.3 -98.1 -7.0 -6.2 -12.4 5.0 47 50 A G < + 0 0 41 -3,-3.0 2,-0.3 1,-0.3 -2,-0.1 0.777 66.9 149.1 82.2 25.2 -2.9 -10.4 5.4 48 51 A R - 0 0 125 -4,-0.1 -4,-1.6 2,-0.0 2,-0.4 -0.707 43.2-128.7 -94.1 144.5 -2.5 -10.0 1.6 49 52 A Q E -C 43 0A 109 -2,-0.3 2,-0.4 -6,-0.2 -6,-0.2 -0.733 21.7-176.3 -94.3 141.0 -0.8 -6.9 0.2 50 53 A V E -C 42 0A 15 -8,-0.9 -8,-2.5 -2,-0.4 2,-0.3 -0.887 16.3-148.6-136.1 102.4 -2.4 -4.8 -2.6 51 54 A b + 0 0 23 -2,-0.4 -35,-2.7 -10,-0.3 2,-0.3 -0.528 24.6 171.9 -74.9 133.5 -0.2 -1.9 -3.8 52 55 A A - 0 0 0 -12,-0.5 -12,-3.6 -2,-0.3 2,-0.5 -0.980 39.0-103.4-139.9 153.3 -2.2 1.1 -5.0 53 56 A D B > -B 39 0A 7 -2,-0.3 3,-1.9 -14,-0.3 7,-0.3 -0.641 21.8-149.2 -78.6 122.5 -1.3 4.7 -6.1 54 57 A K T 3 S+ 0 0 107 -16,-1.0 6,-0.2 -2,-0.5 -1,-0.2 0.794 100.3 57.1 -62.7 -23.1 -2.1 7.1 -3.2 55 58 A S T 3 S+ 0 0 71 -17,-0.6 2,-0.3 4,-0.1 -1,-0.3 0.569 87.8 97.3 -84.2 -6.6 -2.8 9.7 -5.9 56 59 A K S X> S- 0 0 108 -3,-1.9 4,-2.7 1,-0.1 3,-0.7 -0.650 78.2-130.1 -85.3 136.7 -5.5 7.4 -7.4 57 60 A D H 3> S+ 0 0 112 -2,-0.3 4,-3.0 1,-0.3 5,-0.3 0.961 106.7 45.8 -47.8 -70.7 -9.1 8.1 -6.4 58 61 A W H 3> S+ 0 0 55 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.756 115.4 53.1 -50.4 -20.2 -10.2 4.5 -5.5 59 62 A V H <> S+ 0 0 0 -3,-0.7 4,-2.6 -6,-0.2 5,-0.2 0.968 111.0 40.2 -80.7 -58.7 -6.8 4.3 -3.6 60 63 A K H X S+ 0 0 82 -4,-2.7 4,-2.2 -7,-0.3 5,-0.2 0.886 112.9 59.7 -57.0 -35.5 -7.2 7.5 -1.4 61 64 A K H X S+ 0 0 140 -4,-3.0 4,-0.7 -5,-0.4 -1,-0.2 0.949 107.8 43.0 -60.0 -46.5 -10.8 6.5 -0.9 62 65 A L H >X S+ 0 0 11 -4,-1.2 4,-3.7 -5,-0.3 3,-1.3 0.942 110.7 56.3 -65.3 -42.9 -9.9 3.2 0.7 63 66 A M H 3< S+ 0 0 20 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.883 107.9 47.7 -57.2 -35.1 -7.2 4.9 2.7 64 67 A Q H 3< S+ 0 0 169 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.649 117.2 46.1 -80.4 -10.7 -9.9 7.2 4.0 65 68 A Q H << S+ 0 0 108 -3,-1.3 -2,-0.2 -4,-0.7 -3,-0.2 0.898 114.8 41.3 -93.0 -55.9 -11.9 4.1 4.7 66 69 A L S < S- 0 0 9 -4,-3.7 -39,-0.2 1,-0.1 -1,-0.1 -0.657 88.0-116.0 -93.2 150.8 -9.3 1.8 6.3 67 70 A P - 0 0 89 0, 0.0 -39,-2.5 0, 0.0 2,-0.4 -0.114 42.9 -81.9 -73.5 177.0 -6.8 3.0 8.9 68 71 A V - 0 0 89 -41,-0.2 -39,-0.3 1,-0.1 2,-0.2 -0.668 46.3-114.5 -85.1 135.6 -3.0 3.1 8.4 69 72 A T - 0 0 21 -2,-0.4 -1,-0.1 -41,-0.2 -42,-0.1 -0.467 14.6-148.3 -68.0 134.2 -1.3 -0.3 9.0 70 73 A A 0 0 107 1,-0.2 -1,-0.2 -2,-0.2 -2,-0.0 0.714 360.0 360.0 -77.1 -17.2 1.1 -0.1 12.0 71 74 A R 0 0 258 -3,-0.0 -1,-0.2 -42,-0.0 -2,-0.1 0.867 360.0 360.0 -89.6 360.0 3.3 -2.7 10.3