==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REGULATORY PROTEIN 20-FEB-98 1VPC . COMPND 2 MOLECULE: VPR PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR W.SCHUELER,H.DE ROCQUIGNY,Y.BAUDAT,J.SIRE,B.P.ROQUES . 45 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4467.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 71.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 2 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 48.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 52 A D 0 0 176 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 156.9 -28.7 4.2 -7.8 2 53 A T >> - 0 0 113 1,-0.1 4,-0.9 0, 0.0 3,-0.9 -0.834 360.0-171.3-139.2 97.7 -26.7 2.4 -10.6 3 54 A W H 3> S+ 0 0 152 -2,-0.3 4,-2.3 1,-0.2 5,-0.1 0.608 73.2 69.9 -73.0 -21.9 -24.1 0.5 -8.6 4 55 A T H 3> S+ 0 0 92 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.800 101.4 49.1 -64.8 -36.1 -21.9 -0.7 -11.5 5 56 A G H <> S+ 0 0 39 -3,-0.9 4,-1.5 2,-0.2 -2,-0.2 0.880 111.8 47.9 -69.0 -42.4 -20.7 3.0 -12.0 6 57 A V H X S+ 0 0 62 -4,-0.9 4,-1.6 2,-0.2 -2,-0.2 0.907 113.5 49.1 -58.3 -47.4 -19.9 3.4 -8.2 7 58 A E H X S+ 0 0 53 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.917 107.2 55.1 -55.8 -49.7 -18.0 0.0 -8.4 8 59 A A H X S+ 0 0 44 -4,-2.0 4,-1.3 1,-0.2 -2,-0.2 0.798 104.5 54.5 -55.7 -34.3 -16.1 1.2 -11.5 9 60 A L H X S+ 0 0 121 -4,-1.5 4,-1.7 2,-0.2 -1,-0.2 0.922 109.7 46.0 -65.5 -45.5 -14.8 4.3 -9.6 10 61 A I H X S+ 0 0 103 -4,-1.6 4,-1.8 2,-0.2 -2,-0.2 0.762 107.1 59.1 -71.2 -23.5 -13.4 2.1 -6.7 11 62 A R H X S+ 0 0 123 -4,-1.7 4,-1.3 2,-0.2 -1,-0.2 0.867 108.8 44.3 -68.7 -37.5 -11.7 -0.3 -9.3 12 63 A I H X S+ 0 0 100 -4,-1.3 4,-2.3 2,-0.2 -2,-0.2 0.894 111.8 54.3 -67.4 -42.6 -9.7 2.7 -10.8 13 64 A L H X S+ 0 0 108 -4,-1.7 4,-0.8 1,-0.2 -2,-0.2 0.862 110.5 44.2 -62.7 -39.1 -8.8 4.0 -7.1 14 65 A Q H X S+ 0 0 97 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.819 112.0 54.5 -72.1 -30.9 -7.3 0.5 -6.0 15 66 A Q H X S+ 0 0 100 -4,-1.3 4,-2.4 2,-0.2 -2,-0.2 0.914 106.6 50.1 -64.5 -45.7 -5.4 0.3 -9.4 16 67 A L H X S+ 0 0 105 -4,-2.3 4,-1.4 2,-0.2 -1,-0.2 0.731 112.3 49.0 -60.2 -27.0 -3.7 3.8 -8.8 17 68 A L H X S+ 0 0 91 -4,-0.8 4,-2.0 2,-0.2 -2,-0.2 0.888 109.8 49.6 -76.5 -49.1 -2.7 2.5 -5.3 18 69 A F H X S+ 0 0 96 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.900 112.4 49.6 -50.1 -47.6 -1.3 -0.8 -6.8 19 70 A I H X S+ 0 0 83 -4,-2.4 4,-2.4 2,-0.2 5,-0.3 0.882 107.8 53.4 -58.0 -47.2 0.6 1.5 -9.3 20 71 A H H X S+ 0 0 134 -4,-1.4 4,-1.7 1,-0.2 -2,-0.2 0.853 111.2 46.0 -59.3 -39.0 1.9 3.7 -6.3 21 72 A F H X S+ 0 0 135 -4,-2.0 4,-1.1 2,-0.2 -2,-0.2 0.856 114.4 47.7 -70.1 -38.0 3.3 0.6 -4.5 22 73 A R H X S+ 0 0 157 -4,-1.9 4,-1.3 2,-0.2 -2,-0.2 0.929 118.7 38.0 -68.8 -49.0 5.0 -0.8 -7.8 23 74 A I H < S+ 0 0 107 -4,-2.4 -2,-0.2 1,-0.2 -3,-0.2 0.901 116.4 53.3 -70.3 -43.7 6.7 2.5 -8.8 24 75 A G H X S+ 0 0 20 -4,-1.7 4,-1.7 -5,-0.3 3,-0.4 0.713 103.7 57.1 -61.7 -25.5 7.5 3.4 -5.1 25 76 A C H < S+ 0 0 69 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.912 109.1 44.9 -67.9 -46.1 9.3 -0.0 -4.7 26 77 A R T < S+ 0 0 199 -4,-1.3 -2,-0.2 -5,-0.1 -1,-0.2 0.292 121.1 42.0 -78.6 11.0 11.7 0.8 -7.6 27 78 A H T 4 S+ 0 0 149 1,-0.5 2,-0.4 -3,-0.4 3,-0.2 0.670 124.2 26.2-110.5 -72.4 12.2 4.4 -6.2 28 79 A S S < S+ 0 0 45 -4,-1.7 -1,-0.5 1,-0.2 6,-0.2 -0.804 124.1 26.0 -91.4 136.2 12.6 3.8 -2.4 29 80 A R S S+ 0 0 131 4,-2.0 -1,-0.2 -2,-0.4 5,-0.1 0.964 71.8 136.3 76.6 64.5 13.9 0.3 -1.2 30 81 A I S S- 0 0 120 -3,-0.2 -2,-0.1 -4,-0.1 2,-0.1 0.866 92.3 -30.1 -95.7 -74.0 16.0 -0.9 -4.2 31 82 A G S S- 0 0 65 0, 0.0 3,-0.1 0, 0.0 -3,-0.0 -0.591 131.4 -32.1-143.8 73.8 19.1 -2.3 -2.5 32 83 A I S S+ 0 0 102 1,-0.1 2,-0.1 -2,-0.1 -4,-0.0 0.990 88.2 141.7 63.4 71.9 19.3 -0.1 0.6 33 84 A I + 0 0 49 2,-0.0 -4,-2.0 5,-0.0 4,-0.2 -0.660 61.2 66.9-128.2 66.3 17.9 3.2 -0.8 34 85 A Q S S+ 0 0 101 2,-0.7 3,-0.2 -6,-0.2 9,-0.0 0.363 111.8 16.8-155.5 -59.2 16.0 3.9 2.5 35 86 A Q S S+ 0 0 97 1,-0.4 2,-0.6 2,-0.1 6,-0.5 0.887 138.7 32.2 -87.0 -64.3 18.5 4.7 5.3 36 87 A R B +A 40 0A 111 4,-0.2 -2,-0.7 1,-0.2 -1,-0.4 -0.845 65.5 151.9 -89.9 119.3 21.5 5.4 3.0 37 88 A R S S- 0 0 94 2,-1.2 -1,-0.2 -2,-0.6 6,-0.1 0.739 90.0 -37.5-102.5 -72.8 20.4 6.9 -0.4 38 89 A T S S+ 0 0 95 5,-1.1 2,-0.3 1,-0.4 6,-0.2 0.648 141.4 43.0-113.9 -53.7 23.6 8.9 -1.3 39 90 A R S S- 0 0 108 4,-2.0 -2,-1.2 3,-0.2 2,-0.6 -0.674 97.7-108.8 -86.9 145.8 24.6 10.2 2.3 40 91 A N B S+A 36 0A 109 -2,-0.3 2,-0.7 -4,-0.2 -4,-0.2 -0.680 95.8 1.4 -82.1 116.5 24.4 7.6 5.2 41 92 A G S S+ 0 0 32 -2,-0.6 2,-0.1 -6,-0.5 -1,-0.1 -0.784 129.2 46.4 110.7 -84.6 21.4 8.5 7.5 42 93 A A S S- 0 0 40 -2,-0.7 -5,-0.4 1,-0.1 3,-0.3 -0.481 91.1-112.7 -80.4 161.0 19.9 11.6 5.9 43 94 A S S S- 0 0 63 1,-0.3 -4,-2.0 -2,-0.1 -5,-1.1 0.978 98.3 -13.2 -60.2 -60.3 19.1 11.7 2.1 44 95 A K 0 0 171 -6,-0.2 -1,-0.3 -7,-0.1 -3,-0.0 -0.840 360.0 360.0-144.4 107.8 21.8 14.4 1.3 45 96 A S 0 0 106 -3,-0.3 -4,-0.0 -2,-0.3 -2,-0.0 0.102 360.0 360.0-135.2 360.0 23.3 16.4 4.3