==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 26-FEB-08 2VP7 . COMPND 2 MOLECULE: PYGOPUS HOMOLOG 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.FIEDLER,M.J.SANCHEZ-BARRENA,M.NEKRASOV,J.MIESZCZANEK, . 98 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6645.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 53.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 20.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 332 A M 0 0 112 0, 0.0 26,-0.0 0, 0.0 32,-0.0 0.000 360.0 360.0 360.0 133.7 13.2 -4.1 25.1 2 333 A G + 0 0 25 4,-0.0 5,-0.1 33,-0.0 8,-0.1 0.731 360.0 95.7 78.3 26.3 13.1 -3.4 21.4 3 334 A H + 0 0 180 3,-0.0 2,-0.0 0, 0.0 -1,-0.0 0.203 54.1 115.3-127.0 12.9 16.6 -4.7 20.5 4 335 A S S > S- 0 0 63 1,-0.1 3,-0.7 2,-0.0 0, 0.0 -0.221 77.2-112.2 -81.6 171.9 15.9 -8.2 19.4 5 336 A S T 3 S+ 0 0 132 1,-0.2 -1,-0.1 -2,-0.0 0, 0.0 0.668 116.3 38.7 -73.8 -16.4 16.4 -9.8 15.9 6 337 A S T 3 S+ 0 0 100 2,-0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.308 76.5 143.6-135.1 49.3 12.6 -10.0 15.6 7 338 A D < - 0 0 54 -3,-0.7 2,-0.1 -5,-0.1 3,-0.0 -0.712 44.9-129.6 -82.6 139.7 11.0 -6.9 17.2 8 339 A P - 0 0 88 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.453 36.1 -92.9 -74.6 161.2 7.9 -5.5 15.5 9 340 A V - 0 0 73 -2,-0.1 11,-0.1 1,-0.0 9,-0.0 -0.694 55.3-128.0 -70.9 129.3 7.8 -1.8 14.7 10 341 A Y - 0 0 57 -2,-0.4 9,-3.0 9,-0.4 2,-0.2 -0.649 9.6-130.5 -95.3 137.6 6.1 -0.5 17.8 11 342 A P B -A 18 0A 77 0, 0.0 24,-0.5 0, 0.0 7,-0.2 -0.587 30.8-105.1 -83.0 145.7 3.1 1.7 18.0 12 343 A C > - 0 0 4 5,-2.8 4,-1.8 -2,-0.2 24,-0.3 -0.473 19.9-134.6 -70.3 132.3 3.1 4.8 20.2 13 344 A G T 4 S+ 0 0 32 22,-2.3 -1,-0.1 -2,-0.2 23,-0.1 0.605 101.8 37.3 -61.7 -14.5 1.1 4.5 23.4 14 345 A I T 4 S+ 0 0 98 3,-0.1 -1,-0.2 23,-0.0 22,-0.1 0.848 130.1 20.2-101.3 -56.3 -0.5 7.9 22.8 15 346 A C T 4 S- 0 0 42 2,-0.2 -2,-0.1 22,-0.0 3,-0.1 0.615 87.9-132.7 -94.6 -11.2 -1.1 8.4 19.0 16 347 A T < + 0 0 110 -4,-1.8 2,-0.1 1,-0.3 -3,-0.1 0.260 64.2 127.6 72.6 -6.5 -1.1 4.7 17.9 17 348 A N S S- 0 0 103 -6,-0.2 -5,-2.8 1,-0.1 -1,-0.3 -0.421 71.3 -88.0 -81.2 155.0 1.3 5.5 14.9 18 349 A E B -A 11 0A 118 -7,-0.2 2,-1.0 -3,-0.1 -1,-0.1 -0.297 29.8-131.4 -63.2 142.2 4.5 3.6 14.5 19 350 A V - 0 0 15 -9,-3.0 -9,-0.4 -3,-0.1 -1,-0.1 -0.848 37.3-154.8 -91.6 100.7 7.6 4.9 16.3 20 351 A N > - 0 0 63 -2,-1.0 3,-1.6 -11,-0.1 -3,-0.0 -0.197 25.7-104.4 -81.1 167.7 10.0 4.8 13.3 21 352 A D T 3 S+ 0 0 174 1,-0.3 4,-0.1 3,-0.0 -1,-0.1 0.717 119.0 52.7 -63.2 -23.7 13.8 4.5 13.3 22 353 A D T 3 S+ 0 0 141 2,-0.1 2,-0.3 0, 0.0 -1,-0.3 0.060 97.9 82.3-101.6 27.4 14.2 8.2 12.5 23 354 A Q S < S- 0 0 70 -3,-1.6 2,-0.4 -4,-0.0 -4,-0.0 -0.956 87.3-106.4-127.2 146.1 12.0 9.4 15.4 24 355 A D - 0 0 63 -2,-0.3 14,-2.3 13,-0.0 2,-0.4 -0.598 41.5-166.8 -70.8 127.4 12.9 9.9 19.1 25 356 A A E -B 37 0B 30 -2,-0.4 2,-0.4 12,-0.2 12,-0.2 -0.930 10.8-160.7-117.0 144.8 11.3 7.1 21.1 26 357 A I E -B 36 0B 9 10,-2.7 10,-1.6 -2,-0.4 2,-0.5 -0.972 10.2-147.4-123.9 133.6 10.9 6.8 24.8 27 358 A L E -B 35 0B 27 -2,-0.4 2,-0.7 8,-0.2 32,-0.5 -0.872 17.2-127.0-101.7 128.6 10.3 3.4 26.6 28 359 A C B > +c 59 0C 0 6,-3.0 5,-1.1 -2,-0.5 32,-0.2 -0.643 32.3 172.7 -73.0 113.7 8.1 3.3 29.7 29 360 A E T 5 + 0 0 104 30,-2.7 31,-0.2 -2,-0.7 -1,-0.2 0.324 59.3 87.2-104.7 4.8 10.4 1.4 32.1 30 361 A A T 5S- 0 0 42 29,-0.6 -1,-0.1 45,-0.1 30,-0.1 0.975 120.1 -64.5 -65.3 -54.9 8.1 2.0 35.1 31 362 A S T 5S+ 0 0 94 3,-0.1 29,-0.0 0, 0.0 -3,-0.0 0.280 121.3 68.8-155.8 -53.4 6.1 -1.2 34.2 32 363 A C T 5S- 0 0 49 1,-0.1 -3,-0.1 29,-0.0 3,-0.1 0.740 71.3-149.4 -58.3 -34.4 4.2 -1.2 30.9 33 364 A Q < + 0 0 80 -5,-1.1 2,-0.2 1,-0.2 -1,-0.1 0.798 41.8 152.0 65.6 26.8 7.2 -1.3 28.5 34 365 A K - 0 0 91 -6,-0.1 -6,-3.0 -24,-0.0 2,-0.3 -0.618 40.2-130.9 -80.7 147.3 5.2 0.7 25.9 35 366 A F E -B 27 0B 30 -24,-0.5 -22,-2.3 -2,-0.2 2,-0.3 -0.713 25.5-176.6 -97.4 155.9 7.0 2.9 23.5 36 367 A F E -B 26 0B 9 -10,-1.6 -10,-2.7 -2,-0.3 2,-0.3 -0.994 33.1-105.3-148.0 145.3 6.1 6.5 22.7 37 368 A H E > -B 25 0B 12 -2,-0.3 4,-1.3 -12,-0.2 3,-0.3 -0.606 29.4-132.9 -63.4 131.4 7.2 9.3 20.4 38 369 A R H >>>S+ 0 0 32 -14,-2.3 4,-1.0 -2,-0.3 3,-1.0 0.940 108.2 57.1 -46.9 -48.7 9.1 11.8 22.5 39 370 A I H >45S+ 0 0 122 -15,-0.3 3,-0.7 1,-0.3 -1,-0.2 0.886 103.0 52.5 -52.0 -45.8 7.0 14.4 20.8 40 371 A C H 345S+ 0 0 44 -3,-0.3 -1,-0.3 1,-0.2 -2,-0.2 0.776 106.0 53.9 -65.0 -28.9 3.7 12.9 21.9 41 372 A T H <<5S- 0 0 18 -4,-1.3 -1,-0.2 -3,-1.0 -2,-0.2 0.722 106.0-122.4 -78.8 -21.6 4.8 12.8 25.6 42 373 A G T <<5 + 0 0 48 -4,-1.0 2,-0.2 -3,-0.7 -3,-0.1 0.474 61.0 146.3 88.3 2.1 5.6 16.5 25.8 43 374 A M < - 0 0 1 -5,-0.9 -1,-0.3 1,-0.1 -2,-0.1 -0.526 49.6-120.8 -75.0 136.1 9.2 15.8 26.9 44 375 A T > - 0 0 65 -2,-0.2 4,-2.5 33,-0.2 5,-0.2 -0.343 18.0-116.5 -72.4 157.4 11.7 18.4 25.5 45 376 A E H > S+ 0 0 134 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.909 117.4 51.0 -59.7 -38.5 14.5 17.3 23.3 46 377 A T H > S+ 0 0 74 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.941 109.8 48.1 -66.9 -46.1 17.0 18.5 25.9 47 378 A A H > S+ 0 0 2 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.905 112.1 50.7 -58.1 -42.2 15.3 16.6 28.7 48 379 A Y H X S+ 0 0 42 -4,-2.5 4,-3.0 2,-0.2 5,-0.3 0.926 109.4 51.2 -60.8 -45.5 15.2 13.4 26.5 49 380 A G H X S+ 0 0 37 -4,-2.7 4,-1.3 1,-0.2 -2,-0.2 0.921 113.9 43.2 -57.7 -43.4 18.9 13.8 25.8 50 381 A L H X S+ 0 0 60 -4,-2.4 4,-0.7 2,-0.2 -2,-0.2 0.911 115.6 47.2 -72.4 -39.4 19.8 14.1 29.5 51 382 A L H >< S+ 0 0 8 -4,-2.6 3,-1.0 1,-0.2 6,-0.2 0.923 110.4 51.2 -71.1 -41.3 17.5 11.3 30.6 52 383 A T H 3< S+ 0 0 78 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.826 108.7 54.2 -65.7 -27.5 18.6 8.9 27.9 53 384 A A H 3< S+ 0 0 86 -4,-1.3 2,-0.7 -5,-0.3 -1,-0.2 0.670 91.6 84.7 -77.5 -17.0 22.3 9.5 29.0 54 385 A E X< - 0 0 57 -3,-1.0 3,-1.8 -4,-0.7 -1,-0.1 -0.773 60.3-161.7 -99.5 111.1 21.8 8.7 32.7 55 386 A A T 3 S+ 0 0 82 -2,-0.7 -1,-0.1 1,-0.3 -4,-0.0 0.780 90.8 51.1 -57.0 -32.1 22.0 5.0 33.6 56 387 A S T 3 S+ 0 0 18 16,-0.1 17,-3.3 2,-0.0 2,-0.4 0.350 99.8 79.7 -90.8 6.1 20.2 5.5 36.9 57 388 A A E < + d 0 73C 7 -3,-1.8 2,-0.3 -6,-0.2 17,-0.2 -0.908 51.5 171.0-116.6 140.3 17.3 7.3 35.4 58 389 A V E - d 0 74C 9 15,-2.6 17,-3.0 -2,-0.4 2,-0.3 -0.916 27.4-116.5-137.8 168.3 14.3 5.9 33.6 59 390 A W E -cd 28 75C 4 -32,-0.5 -30,-2.7 -2,-0.3 -29,-0.6 -0.848 18.5-157.4-109.5 149.0 11.0 7.3 32.3 60 391 A G - 0 0 0 15,-2.2 17,-0.4 -2,-0.3 -32,-0.1 -0.990 21.7-116.9-126.8 131.1 7.5 6.4 33.4 61 392 A C > - 0 0 3 -2,-0.4 4,-2.4 15,-0.1 5,-0.2 -0.162 29.3-113.6 -54.1 150.0 4.2 6.9 31.4 62 393 A D H > S+ 0 0 109 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.771 119.1 51.2 -62.7 -26.2 1.5 9.3 32.9 63 394 A T H >4 S+ 0 0 112 2,-0.2 3,-0.6 1,-0.1 -1,-0.2 0.969 111.3 44.9 -70.4 -57.0 -0.7 6.2 33.3 64 395 A C H 34 S+ 0 0 46 1,-0.2 -2,-0.2 2,-0.1 -1,-0.1 0.823 109.7 56.4 -57.7 -35.1 1.9 4.2 35.2 65 396 A M H 3< 0 0 83 -4,-2.4 -1,-0.2 10,-0.0 -2,-0.2 0.838 360.0 360.0 -70.0 -33.6 2.9 7.1 37.4 66 397 A A << 0 0 122 -4,-1.0 -3,-0.1 -3,-0.6 -2,-0.1 0.729 360.0 360.0 -81.3 360.0 -0.7 7.5 38.6 67 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 68 173 B A 0 0 164 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 110.8 22.6 -7.8 42.7 69 174 B A - 0 0 109 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.943 360.0-166.7-129.7 150.4 20.1 -5.0 43.1 70 175 B K - 0 0 145 -2,-0.3 2,-0.5 2,-0.0 -14,-0.0 -0.978 17.5-133.0-137.1 142.9 20.2 -1.5 41.8 71 176 B V - 0 0 104 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.884 25.8-175.1 -97.7 130.2 18.1 1.6 42.6 72 177 B V - 0 0 62 -2,-0.5 2,-0.5 -15,-0.0 -15,-0.2 -0.913 21.3-128.2-117.9 152.8 16.8 3.5 39.6 73 178 B Y E -d 57 0C 102 -17,-3.3 -15,-2.6 -2,-0.3 2,-0.6 -0.887 17.3-145.4-103.9 131.8 14.9 6.8 39.6 74 179 B V E -d 58 0C 63 -2,-0.5 2,-0.5 -17,-0.2 -15,-0.2 -0.830 14.3-162.0-102.9 122.4 11.7 7.0 37.7 75 180 B F E -d 59 0C 21 -17,-3.0 -15,-2.2 -2,-0.6 2,-0.1 -0.887 9.0-147.5-108.0 127.4 10.8 10.3 36.0 76 181 B S - 0 0 36 -2,-0.5 5,-0.2 -17,-0.2 -15,-0.1 -0.369 39.5-102.1 -68.9 165.9 7.5 11.4 34.8 77 182 B T 0 0 8 -17,-0.4 4,-2.7 1,-0.2 5,-0.2 0.941 360.0 360.0 -55.5 -47.6 7.5 13.7 31.8 78 183 B E 0 0 134 2,-0.2 4,-2.5 3,-0.2 -1,-0.2 0.928 360.0 360.0 -52.7 360.0 6.9 16.7 34.1 79 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 80 185 B A > 0 0 6 0, 0.0 4,-2.2 0, 0.0 -2,-0.2 0.000 360.0 360.0 360.0 -45.9 12.1 15.1 33.4 81 186 B N H > + 0 0 39 -4,-2.7 4,-2.4 -5,-0.2 -3,-0.2 0.927 360.0 48.6 -63.3 -44.7 11.4 18.5 32.0 82 187 B K H > S+ 0 0 145 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.876 110.7 51.4 -59.2 -40.7 11.8 20.2 35.4 83 188 B A H > S+ 0 0 20 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.898 108.3 50.9 -67.9 -41.2 15.1 18.4 36.0 84 189 B A H X S+ 0 0 2 -4,-2.2 4,-2.8 2,-0.2 -2,-0.2 0.925 109.3 51.5 -61.3 -44.0 16.4 19.5 32.7 85 190 B E H X S+ 0 0 99 -4,-2.4 4,-2.4 1,-0.2 -2,-0.2 0.920 107.2 53.5 -57.7 -43.3 15.4 23.1 33.6 86 191 B A H <>S+ 0 0 16 -4,-2.3 5,-2.7 2,-0.2 6,-1.0 0.900 110.7 45.9 -59.1 -40.5 17.3 22.8 36.9 87 192 B V H ><5S+ 0 0 37 -4,-2.0 3,-1.7 1,-0.2 -2,-0.2 0.945 112.7 50.5 -67.4 -44.1 20.5 21.6 35.0 88 193 B L H 3<5S+ 0 0 110 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.824 109.1 51.0 -63.8 -31.5 20.1 24.5 32.5 89 194 B K T 3<5S- 0 0 137 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.409 114.2-119.9 -84.1 3.0 19.7 27.0 35.3 90 195 B G T < 5S+ 0 0 65 -3,-1.7 -3,-0.2 2,-0.2 -2,-0.1 0.793 78.6 126.1 59.7 32.2 22.9 25.7 36.9 91 196 B Q S S- 0 0 43 -40,-0.0 3,-2.0 4,-0.0 -1,-0.2 -0.911 77.4-102.6-139.1 167.4 22.8 16.3 36.7 95 200 B I T 3 S+ 0 0 14 -2,-0.3 -11,-0.1 1,-0.3 -9,-0.0 0.631 122.5 48.4 -70.9 -10.9 19.2 15.3 36.5 96 201 B V T 3 S+ 0 0 25 1,-0.1 2,-2.1 2,-0.1 -1,-0.3 0.182 74.6 114.9-110.1 16.4 19.7 12.7 39.3 97 202 B S < - 0 0 37 -3,-2.0 -4,-0.1 2,-0.0 -1,-0.1 -0.306 52.9-176.7 -81.0 56.6 21.5 15.2 41.6 98 203 B F + 0 0 117 -2,-2.1 2,-0.3 -6,-0.1 -2,-0.1 -0.192 7.8 161.4 -60.2 148.9 18.7 15.0 44.1 99 204 B H 0 0 150 -7,-0.0 -1,-0.0 0, 0.0 -7,-0.0 -0.943 360.0 360.0-158.8 175.2 18.8 17.1 47.2 100 205 B I 0 0 229 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.906 360.0 360.0-117.2 360.0 16.8 18.6 50.0