==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 27-FEB-08 2VPB . COMPND 2 MOLECULE: PYGOPUS HOMOLOG 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.FIEDLER,M.J.SANCHEZ-BARRENA,M.NEKRASOV,J.MIESZCZANEK, . 92 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6387.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 23.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 341 A Y 0 0 189 0, 0.0 9,-2.6 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 120.2 -4.7 -1.8 -30.1 2 342 A P B -A 9 0A 89 0, 0.0 24,-0.4 0, 0.0 7,-0.2 -0.537 360.0-104.5 -71.7 134.7 -1.5 -4.0 -29.7 3 343 A C > - 0 0 4 5,-2.8 4,-1.9 -2,-0.2 24,-0.3 -0.375 21.8-132.1 -60.3 132.0 -1.9 -6.9 -27.3 4 344 A G T 4 S+ 0 0 32 22,-2.0 -1,-0.1 1,-0.2 23,-0.1 0.620 102.7 32.1 -62.7 -13.9 -0.2 -6.2 -24.1 5 345 A I T 4 S+ 0 0 94 3,-0.1 -1,-0.2 23,-0.0 22,-0.1 0.814 131.8 23.2-105.0 -59.0 1.4 -9.7 -24.2 6 346 A C T 4 S- 0 0 39 2,-0.1 -2,-0.2 1,-0.1 3,-0.1 0.587 87.7-134.6 -91.0 -10.6 2.0 -10.7 -27.9 7 347 A T < + 0 0 108 -4,-1.9 2,-0.1 1,-0.3 -3,-0.1 0.246 63.5 126.5 71.0 -9.4 2.1 -7.2 -29.4 8 348 A N S S- 0 0 102 -6,-0.2 -5,-2.8 1,-0.1 -1,-0.3 -0.434 73.1 -83.8 -75.6 153.8 -0.1 -8.3 -32.3 9 349 A E B -A 2 0A 135 -7,-0.2 2,-0.9 -2,-0.1 -1,-0.1 -0.260 33.4-131.3 -58.6 137.6 -3.3 -6.3 -33.1 10 350 A V - 0 0 20 -9,-2.6 -1,-0.1 -3,-0.1 2,-0.1 -0.839 35.3-161.9 -89.9 106.0 -6.4 -7.2 -31.0 11 351 A N > - 0 0 69 -2,-0.9 3,-1.0 4,-0.1 0, 0.0 -0.325 29.0-108.3 -89.6 170.6 -9.0 -7.6 -33.7 12 352 A D T 3 S+ 0 0 173 1,-0.2 4,-0.1 -2,-0.1 -1,-0.1 0.796 115.1 53.6 -67.8 -32.4 -12.9 -7.5 -33.5 13 353 A D T 3 S+ 0 0 145 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 0.323 96.7 82.0 -90.0 6.9 -13.3 -11.3 -34.2 14 354 A Q S < S- 0 0 76 -3,-1.0 2,-0.5 15,-0.0 -4,-0.0 -0.842 95.5-100.1-106.7 147.9 -10.9 -12.3 -31.3 15 355 A D - 0 0 58 -2,-0.3 14,-2.8 2,-0.0 2,-0.4 -0.595 50.1-165.0 -64.1 115.5 -11.8 -12.5 -27.7 16 356 A A E -B 28 0B 23 -2,-0.5 2,-0.4 12,-0.2 12,-0.2 -0.880 11.5-169.6-108.1 141.9 -10.5 -9.2 -26.4 17 357 A I E -B 27 0B 9 10,-2.6 10,-2.1 -2,-0.4 2,-0.4 -0.997 10.1-147.8-134.1 137.5 -10.0 -8.2 -22.7 18 358 A L E -B 26 0B 31 -2,-0.4 2,-0.7 8,-0.2 32,-0.5 -0.854 20.7-123.9-102.2 132.9 -9.1 -4.8 -21.3 19 359 A C B > +c 50 0C 0 6,-2.7 5,-1.0 -2,-0.4 32,-0.2 -0.661 31.3 175.0 -74.4 115.8 -7.0 -4.4 -18.2 20 360 A E T 5 + 0 0 100 30,-3.2 31,-0.2 -2,-0.7 -1,-0.1 0.140 62.4 82.2-110.3 17.7 -9.2 -2.4 -15.8 21 361 A A T 5S- 0 0 41 29,-0.3 -1,-0.1 47,-0.1 30,-0.1 0.877 120.7 -62.8 -80.9 -44.3 -6.8 -2.6 -12.8 22 362 A S T 5S+ 0 0 93 3,-0.1 29,-0.0 -3,-0.0 -2,-0.0 0.257 119.3 67.6-164.4 -54.2 -4.7 0.3 -14.2 23 363 A C T 5S- 0 0 47 1,-0.1 -3,-0.1 29,-0.1 28,-0.0 0.666 71.2-149.3 -71.2 -21.4 -2.9 0.1 -17.5 24 364 A Q < + 0 0 112 -5,-1.0 2,-0.3 1,-0.2 -4,-0.1 0.766 41.5 149.8 57.7 28.7 -6.0 -0.0 -19.8 25 365 A K - 0 0 113 -24,-0.0 -6,-2.7 -6,-0.0 2,-0.3 -0.638 43.8-127.4 -83.0 149.3 -4.1 -2.2 -22.4 26 366 A W E -B 18 0B 84 -24,-0.4 -22,-2.0 -2,-0.3 2,-0.3 -0.720 28.5-175.7 -91.7 149.5 -6.1 -4.6 -24.5 27 367 A F E -B 17 0B 8 -10,-2.1 -10,-2.6 -2,-0.3 2,-0.4 -0.964 31.9-106.7-137.9 152.9 -5.0 -8.3 -24.7 28 368 A H E > -B 16 0B 12 -2,-0.3 4,-1.3 -12,-0.2 3,-0.5 -0.716 30.8-129.6 -71.0 134.6 -6.1 -11.4 -26.6 29 369 A R H >>>S+ 0 0 33 -14,-2.8 4,-0.9 -2,-0.4 5,-0.9 0.922 107.8 55.7 -48.7 -48.0 -8.0 -13.7 -24.2 30 370 A I H >45S+ 0 0 123 -15,-0.3 3,-0.7 1,-0.3 -1,-0.2 0.874 102.8 54.5 -59.9 -34.9 -5.8 -16.6 -25.3 31 371 A C H 345S+ 0 0 42 -3,-0.5 -1,-0.3 1,-0.2 -2,-0.2 0.815 104.9 54.4 -66.8 -31.5 -2.5 -14.7 -24.5 32 372 A T H <<5S- 0 0 16 -4,-1.3 -1,-0.2 -3,-0.8 -2,-0.2 0.711 107.6-123.3 -73.4 -23.1 -3.7 -14.1 -20.9 33 373 A G T <<5 + 0 0 48 -4,-0.9 2,-0.2 -3,-0.7 -3,-0.1 0.418 61.0 145.4 87.1 -0.0 -4.4 -17.8 -20.2 34 374 A M < - 0 0 2 -5,-0.9 -1,-0.3 1,-0.1 -2,-0.1 -0.529 50.8-119.6 -68.0 135.8 -8.0 -17.1 -19.3 35 375 A T > - 0 0 62 -2,-0.2 4,-2.3 35,-0.2 5,-0.2 -0.306 18.6-116.0 -71.0 159.3 -10.3 -20.0 -20.3 36 376 A E H > S+ 0 0 134 2,-0.2 4,-2.4 1,-0.2 5,-0.1 0.898 117.8 51.2 -61.9 -37.8 -13.2 -19.2 -22.7 37 377 A T H > S+ 0 0 71 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.931 109.9 47.9 -67.3 -43.3 -15.7 -20.1 -20.0 38 378 A A H > S+ 0 0 2 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.890 111.9 51.4 -62.4 -38.0 -14.0 -17.8 -17.4 39 379 A Y H X S+ 0 0 41 -4,-2.3 4,-2.6 2,-0.2 5,-0.2 0.917 109.0 50.1 -63.9 -45.0 -14.0 -15.0 -20.1 40 380 A G H X S+ 0 0 36 -4,-2.4 4,-1.2 1,-0.2 -2,-0.2 0.914 113.7 45.2 -59.8 -42.9 -17.7 -15.5 -20.8 41 381 A L H X S+ 0 0 58 -4,-2.3 4,-1.1 2,-0.2 -2,-0.2 0.907 114.4 47.6 -69.2 -41.9 -18.6 -15.4 -17.1 42 382 A L H < S+ 0 0 6 -4,-2.5 3,-0.5 1,-0.2 6,-0.3 0.920 111.5 49.2 -66.7 -41.3 -16.4 -12.3 -16.3 43 383 A T H < S+ 0 0 86 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.777 112.1 50.6 -74.5 -19.5 -17.6 -10.3 -19.3 44 384 A A H < S+ 0 0 86 -4,-1.2 2,-0.7 -5,-0.2 -1,-0.2 0.676 93.7 82.6 -85.1 -22.2 -21.3 -11.1 -18.3 45 385 A E >< - 0 0 54 -4,-1.1 3,-1.5 -3,-0.5 -1,-0.0 -0.770 64.2-160.2 -92.0 115.2 -20.9 -10.0 -14.7 46 386 A A T 3 S+ 0 0 90 -2,-0.7 -1,-0.2 1,-0.3 -4,-0.0 0.801 88.8 52.8 -65.5 -27.9 -21.2 -6.3 -14.4 47 387 A S T 3 S+ 0 0 30 18,-0.1 19,-3.2 2,-0.0 2,-0.4 0.327 99.9 76.8 -90.7 8.9 -19.4 -6.1 -11.0 48 388 A A E < + d 0 66C 6 -3,-1.5 2,-0.3 -6,-0.3 19,-0.2 -0.976 51.3 166.5-128.0 131.0 -16.3 -8.0 -12.2 49 389 A V E - d 0 67C 18 17,-3.0 19,-3.1 -2,-0.4 2,-0.3 -0.791 30.2-111.1-132.8 173.3 -13.5 -6.8 -14.3 50 390 A W E -cd 19 68C 7 -32,-0.5 -30,-3.2 -2,-0.3 2,-0.4 -0.841 18.3-162.9-111.0 147.9 -10.0 -8.2 -15.2 51 391 A G - 0 0 0 17,-2.3 19,-0.4 -2,-0.3 -32,-0.1 -0.992 24.2-119.3-126.8 138.3 -6.5 -7.0 -14.3 52 392 A C > - 0 0 5 -2,-0.4 4,-2.3 17,-0.1 5,-0.2 -0.228 30.4-105.5 -71.3 162.8 -3.4 -8.1 -16.0 53 393 A D H > S+ 0 0 102 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.862 119.4 52.5 -58.1 -36.6 -0.6 -9.9 -14.2 54 394 A T H 4 S+ 0 0 124 1,-0.2 -1,-0.2 2,-0.2 3,-0.0 0.938 113.0 40.9 -67.2 -47.4 1.6 -6.7 -14.2 55 395 A C H 4 S+ 0 0 41 1,-0.2 -1,-0.2 2,-0.0 -2,-0.2 0.805 117.4 49.5 -71.2 -29.3 -1.0 -4.4 -12.6 56 396 A M H < 0 0 80 -4,-2.3 -1,-0.2 12,-0.0 -2,-0.2 0.759 360.0 360.0 -80.5 -25.9 -2.2 -7.1 -10.2 57 397 A A < 0 0 121 -4,-1.7 -3,-0.1 -5,-0.2 -5,-0.0 0.434 360.0 360.0 -79.5 360.0 1.4 -8.0 -9.0 58 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 59 171 B A 0 0 162 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 150.9 -27.6 12.1 -7.2 60 172 B M + 0 0 181 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.998 360.0 169.1-145.8 129.7 -24.4 10.4 -6.2 61 173 B A - 0 0 92 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.860 20.0-145.0-135.0 169.1 -23.5 6.7 -5.7 62 174 B A - 0 0 105 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.981 12.7-162.2-136.4 151.2 -20.6 4.4 -5.3 63 175 B K - 0 0 176 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.953 16.2-134.0-131.7 140.3 -20.0 0.9 -6.6 64 176 B V - 0 0 104 -2,-0.3 2,-0.5 2,-0.0 -2,-0.0 -0.902 23.6-167.9 -95.7 129.6 -17.6 -1.9 -5.6 65 177 B V - 0 0 57 -2,-0.5 2,-0.4 -17,-0.0 -17,-0.2 -0.977 14.3-137.7-118.6 127.5 -16.0 -3.5 -8.6 66 178 B Y E -d 48 0C 98 -19,-3.2 -17,-3.0 -2,-0.5 2,-0.6 -0.712 11.0-151.3 -88.1 132.3 -14.1 -6.7 -8.2 67 179 B V E -d 49 0C 59 -2,-0.4 2,-0.5 -19,-0.2 -17,-0.2 -0.916 14.0-163.6-109.3 111.1 -10.8 -7.0 -10.1 68 180 B F E -d 50 0C 11 -19,-3.1 -17,-2.3 -2,-0.6 2,-0.1 -0.828 11.0-143.5 -98.2 129.7 -9.9 -10.6 -11.0 69 181 B S > - 0 0 22 -2,-0.5 4,-2.5 -19,-0.2 5,-0.2 -0.353 38.9-101.6 -66.8 167.1 -6.5 -11.8 -12.1 70 182 B T H > S+ 0 0 9 -19,-0.4 4,-2.6 1,-0.2 5,-0.2 0.929 124.9 54.2 -57.1 -43.7 -6.5 -14.5 -14.8 71 183 B E H > S+ 0 0 115 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.921 111.9 42.3 -56.4 -46.7 -5.8 -17.0 -12.1 72 184 B M H > S+ 0 0 99 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.805 111.8 54.3 -78.4 -26.6 -8.8 -15.9 -10.0 73 185 B A H X S+ 0 0 2 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.934 112.3 44.7 -64.6 -45.3 -11.1 -15.6 -13.0 74 186 B N H X S+ 0 0 37 -4,-2.6 4,-2.2 -5,-0.2 -2,-0.2 0.913 114.6 49.0 -65.8 -41.6 -10.2 -19.2 -14.0 75 187 B K H X S+ 0 0 112 -4,-2.3 4,-2.2 -5,-0.2 -1,-0.2 0.904 110.2 50.5 -65.3 -38.9 -10.6 -20.4 -10.4 76 188 B A H X S+ 0 0 15 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.901 109.0 51.6 -68.1 -39.7 -14.0 -18.6 -10.0 77 189 B A H X S+ 0 0 2 -4,-2.2 4,-2.7 2,-0.2 -1,-0.2 0.919 108.4 52.1 -60.0 -41.8 -15.2 -20.2 -13.2 78 190 B E H X S+ 0 0 97 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.913 107.1 53.1 -60.1 -41.6 -14.1 -23.6 -11.8 79 191 B A H <>S+ 0 0 19 -4,-2.2 5,-2.3 2,-0.2 6,-1.0 0.894 110.8 46.7 -60.1 -41.8 -16.1 -22.9 -8.6 80 192 B V H ><5S+ 0 0 36 -4,-1.9 3,-1.6 4,-0.2 -2,-0.2 0.947 112.9 48.8 -63.9 -48.8 -19.2 -22.2 -10.7 81 193 B L H 3<5S+ 0 0 109 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.837 109.0 53.2 -62.1 -34.5 -18.7 -25.3 -12.8 82 194 B K T 3<5S- 0 0 138 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.2 0.433 114.8-117.6 -80.4 0.0 -18.3 -27.5 -9.7 83 195 B G T < 5S+ 0 0 65 -3,-1.6 -3,-0.2 2,-0.2 -2,-0.1 0.643 81.1 122.4 74.3 16.7 -21.6 -26.1 -8.3 84 196 B Q S S- 0 0 54 -42,-0.0 3,-1.8 -8,-0.0 -1,-0.2 -0.927 78.6-103.0-142.6 164.3 -21.7 -16.7 -9.7 88 200 B I T 3 S+ 0 0 12 -2,-0.3 -11,-0.1 1,-0.3 -12,-0.0 0.599 122.6 47.1 -68.4 -11.2 -18.0 -15.7 -9.9 89 201 B V T 3 S+ 0 0 25 1,-0.1 2,-2.0 2,-0.1 -1,-0.3 0.172 74.8 115.8-113.5 17.7 -18.8 -12.9 -7.4 90 202 B S < - 0 0 43 -3,-1.8 -4,-0.1 2,-0.0 -1,-0.1 -0.404 50.0-177.2 -81.5 61.1 -20.7 -15.0 -4.9 91 203 B F + 0 0 116 -2,-2.0 2,-0.3 -6,-0.1 -2,-0.1 -0.290 12.0 149.4 -65.3 148.0 -18.0 -14.5 -2.2 92 204 B H 0 0 137 -7,-0.0 -1,-0.0 0, 0.0 -7,-0.0 -0.938 360.0 360.0-162.6 176.4 -18.6 -16.4 1.1 93 205 B I 0 0 222 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.751 360.0 360.0 -97.7 360.0 -17.1 -18.0 4.0