==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQA . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6509.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 51.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 213 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 137.7 -0.8 18.9 2.8 2 2 A I - 0 0 64 61,-0.1 2,-0.6 35,-0.0 61,-0.3 -0.779 360.0-140.7 -83.2 124.5 -0.6 16.3 5.6 3 3 A K - 0 0 114 -2,-0.5 33,-2.3 33,-0.5 2,-0.4 -0.811 24.1-175.9 -84.4 121.4 0.5 17.9 8.9 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.9 -2,-0.6 2,-0.4 -0.954 5.1-164.2-118.2 140.0 2.9 15.5 10.6 5 5 A E E -AB 34 60A 60 29,-3.2 29,-2.4 -2,-0.4 2,-0.6 -0.988 15.0-155.8-126.1 132.2 4.3 16.2 14.1 6 6 A I E - B 0 59A 1 53,-2.3 53,-1.9 -2,-0.4 27,-0.1 -0.959 27.2-148.5 -96.9 118.3 7.3 14.5 15.8 7 7 A K > - 0 0 79 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.425 27.1-103.7 -79.3 161.4 6.5 15.1 19.6 8 8 A P G > S+ 0 0 106 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.807 123.5 56.8 -52.2 -33.9 9.3 15.5 22.1 9 9 A S G 3 S+ 0 0 112 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.517 102.7 56.3 -75.0 -6.8 8.8 11.9 23.3 10 10 A Q G < + 0 0 14 -3,-2.0 22,-0.2 1,-0.1 -1,-0.2 0.191 68.8 113.5-112.1 15.9 9.3 10.6 19.7 11 11 A A < + 0 0 41 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.472 66.4 66.4 -72.5 -3.8 12.8 12.1 19.1 12 12 A Q - 0 0 135 -3,-0.2 20,-0.4 45,-0.0 2,-0.3 -0.789 67.1-142.2-115.5 163.2 14.6 8.7 18.9 13 13 A F - 0 0 57 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.757 6.6-145.0-114.8 160.5 14.6 5.7 16.6 14 14 A T E -C 30 0A 99 16,-2.2 16,-2.9 -2,-0.3 2,-0.4 -0.883 16.9-135.5-115.6 160.9 14.8 2.0 17.3 15 15 A T E -C 29 0A 78 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.962 12.9-166.9-123.9 130.4 16.6 -0.5 15.0 16 16 A R E -C 28 0A 136 12,-2.5 12,-2.8 -2,-0.4 2,-0.3 -0.882 15.9-169.4-110.9 151.7 15.5 -3.9 13.8 17 17 A S E +C 27 0A 80 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.866 17.9 126.2-139.9 165.0 17.8 -6.4 12.1 18 18 A G E -C 26 0A 25 8,-1.4 8,-2.3 -2,-0.3 2,-0.4 -0.985 47.0 -76.2 172.8-169.4 18.1 -9.6 10.2 19 19 A V E -C 25 0A 99 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.982 37.2-126.8-126.1 131.9 19.3 -11.5 7.1 20 20 A S > - 0 0 43 4,-3.1 3,-2.0 -2,-0.4 6,-0.0 -0.106 39.2 -88.9 -67.2 170.0 17.9 -11.5 3.6 21 21 A R T 3 S+ 0 0 118 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.833 126.2 38.6 -50.9 -40.4 16.9 -14.5 1.5 22 22 A Q T 3 S- 0 0 179 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.093 127.6 -85.1-107.9 33.0 20.3 -14.9 0.1 23 23 A G S < S+ 0 0 49 -3,-2.0 -2,-0.1 1,-0.2 0, 0.0 0.195 78.8 135.2 95.2 -16.5 22.5 -14.1 3.1 24 24 A K - 0 0 151 -5,-0.1 -4,-3.1 1,-0.1 -1,-0.2 -0.532 50.5-129.0 -68.9 127.7 22.9 -10.2 3.1 25 25 A P E -C 19 0A 94 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.397 28.2-171.3 -63.2 149.4 22.5 -8.5 6.6 26 26 A Y E -C 18 0A 90 -8,-2.3 -8,-1.4 -2,-0.1 2,-0.3 -0.979 13.5-160.9-139.7 157.9 20.1 -5.5 6.8 27 27 A S E -C 17 0A 79 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.997 5.0-165.0-139.2 135.1 19.2 -2.9 9.4 28 28 A L E -C 16 0A 53 -12,-2.8 -12,-2.5 -2,-0.3 2,-0.4 -0.987 8.2-151.3-121.5 126.7 16.0 -0.8 9.5 29 29 A N E -C 15 0A 40 -2,-0.4 20,-2.7 20,-0.3 2,-0.4 -0.811 16.5-167.0 -98.8 128.6 15.6 2.3 11.7 30 30 A E E +CD 14 48A 50 -16,-2.9 -16,-2.2 -2,-0.4 2,-0.3 -0.946 9.2 179.4-120.7 140.0 12.1 3.1 12.8 31 31 A Q E - D 0 47A 3 16,-2.1 16,-3.3 -2,-0.4 2,-0.3 -0.974 20.6-130.1-134.8 148.9 10.6 6.3 14.4 32 32 A L E + D 0 46A 77 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.659 29.2 164.5 -99.5 155.1 7.1 7.2 15.5 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.3 -2,-0.3 2,-0.4 -0.918 33.8-112.1-154.0 170.5 5.1 10.4 14.7 34 34 A Y E -AD 5 44A 83 -29,-2.4 -29,-3.2 -2,-0.3 2,-0.4 -0.985 26.5-166.5-112.9 132.0 1.5 11.8 14.7 35 35 A A E -AD 4 43A 6 8,-2.3 8,-2.6 -2,-0.4 2,-0.9 -0.978 19.5-132.6-121.6 133.1 -0.3 12.5 11.5 36 36 A D + 0 0 66 -33,-2.3 -33,-0.5 -2,-0.4 -2,-0.0 -0.769 29.5 169.8 -88.8 106.3 -3.4 14.6 11.3 37 37 A L - 0 0 105 -2,-0.9 -1,-0.1 4,-0.3 3,-0.1 0.092 62.4 -95.1-103.3 23.1 -5.8 12.7 9.2 38 38 A G S S+ 0 0 66 1,-0.2 -2,-0.1 2,-0.0 2,-0.1 0.572 86.2 124.1 79.3 9.8 -8.8 14.9 10.0 39 39 A N S S- 0 0 104 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.261 84.8 -83.0 -86.8-175.8 -10.2 12.9 12.9 40 40 A E S S+ 0 0 191 1,-0.1 -1,-0.0 -3,-0.1 -2,-0.0 0.830 115.8 15.9 -62.2 -28.8 -10.8 14.4 16.4 41 41 A Y S S- 0 0 190 -4,-0.0 -2,-0.3 0, 0.0 -4,-0.3 -0.968 93.8 -94.3-134.8 153.5 -7.2 13.8 17.3 42 42 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.257 44.0-127.7 -54.5 152.4 -4.0 13.0 15.2 43 43 A V E -D 35 0A 52 -8,-2.6 -8,-2.3 -4,-0.0 2,-0.3 -0.804 17.3-104.1-111.0 153.3 -3.1 9.3 14.9 44 44 A L E -D 34 0A 100 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.565 39.7-177.0 -76.3 131.5 0.1 7.4 15.6 45 45 A V E -D 33 0A 40 -12,-2.3 -12,-1.9 -2,-0.3 2,-0.4 -0.983 21.4-131.6-131.7 134.1 2.1 6.4 12.5 46 46 A K E -D 32 0A 166 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.777 20.1-159.7 -86.9 132.3 5.4 4.3 12.1 47 47 A L E -D 31 0A 2 -16,-3.3 -16,-2.1 -2,-0.4 2,-0.5 -0.872 7.8-154.4-105.9 139.2 8.2 5.8 9.9 48 48 A T E -D 30 0A 41 -2,-0.4 -18,-0.2 -18,-0.2 -2,-0.0 -0.979 24.7-138.6-110.6 120.0 11.0 3.7 8.4 49 49 A L - 0 0 9 -20,-2.7 -20,-0.3 -2,-0.5 2,-0.2 -0.281 15.2-109.2 -76.8 156.8 14.1 6.0 7.8 50 50 A D > - 0 0 47 4,-0.1 3,-1.9 1,-0.1 -1,-0.1 -0.554 51.5 -75.1 -81.2 159.0 16.3 5.9 4.7 51 51 A E T 3 S+ 0 0 199 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.0 -0.190 117.2 9.5 -54.4 134.1 19.9 4.6 4.9 52 52 A G T 3 S+ 0 0 80 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.492 96.7 128.8 74.8 6.1 22.3 7.0 6.6 53 53 A Q < - 0 0 58 -3,-1.9 -1,-0.2 -24,-0.0 3,-0.1 -0.795 52.0-134.8 -98.2 130.9 19.5 9.4 7.7 54 54 A P - 0 0 97 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.249 39.9 -79.2 -66.4 164.8 19.2 10.6 11.4 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.390 53.5-102.8 -62.7 142.2 16.0 10.7 13.3 56 56 A Y - 0 0 22 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.508 39.1-120.2 -61.4 136.8 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.364 41.0 -79.2 -73.8 155.9 13.9 16.3 15.3 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.327 88.5 76.7 -53.0 139.2 10.7 17.4 17.2 59 59 A G E S-B 6 0A 29 -53,-1.9 -53,-2.3 -3,-0.1 2,-0.4 -0.902 80.9 -45.3 149.6-173.4 8.6 19.8 15.2 60 60 A L E +B 5 0A 85 -2,-0.3 26,-2.0 -55,-0.2 2,-0.3 -0.740 51.8 171.1 -99.5 139.5 6.2 20.2 12.3 61 61 A Y E -BE 4 85A 26 -57,-2.9 -57,-2.5 -2,-0.4 2,-0.3 -0.913 20.4-150.8-138.2 159.9 6.6 18.5 9.0 62 62 A T E - E 0 84A 20 22,-2.8 22,-2.3 -2,-0.3 2,-0.4 -0.791 38.0 -87.8-125.3 178.0 4.9 17.9 5.7 63 63 A V E - E 0 83A 25 -61,-0.3 20,-0.2 -2,-0.3 2,-0.2 -0.709 33.9-133.7 -94.4 129.7 5.3 14.9 3.2 64 64 A H > - 0 0 88 18,-2.9 3,-2.1 -2,-0.4 18,-0.4 -0.557 20.0-120.7 -78.8 147.0 7.9 14.9 0.4 65 65 A L G > S+ 0 0 139 1,-0.3 3,-1.8 -2,-0.2 -1,-0.1 0.776 107.3 71.6 -54.3 -32.3 6.8 13.9 -3.2 66 66 A S G 3 S+ 0 0 55 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.535 77.6 81.4 -66.0 -4.7 9.4 11.1 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.1 12,-3.3 15,-0.2 13,-0.6 0.690 86.0 72.7 -67.7 -19.5 7.1 9.2 -0.7 68 68 A F E < +F 78 0B 75 -3,-1.8 2,-0.3 10,-0.2 10,-0.2 -0.661 51.4 163.5-108.0 155.3 5.0 8.1 -3.6 69 69 A K E -F 77 0B 105 8,-2.0 8,-2.6 -2,-0.3 2,-0.6 -0.970 43.4-101.0-154.8 158.3 5.3 5.5 -6.4 70 70 A V E -F 76 0B 99 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.818 45.8-140.7 -86.2 127.5 3.0 3.7 -8.9 71 71 A G > - 0 0 13 4,-2.7 3,-1.8 -2,-0.6 -1,-0.1 -0.119 28.8 -88.0 -78.8 178.9 2.4 0.2 -7.6 72 72 A Q T 3 S+ 0 0 176 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.636 126.0 51.7 -71.5 -7.5 2.2 -3.1 -9.5 73 73 A F T 3 S- 0 0 176 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.307 119.7-105.3-104.9 6.7 -1.5 -2.7 -10.1 74 74 A G S < S+ 0 0 59 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.390 83.9 117.1 88.9 -2.1 -1.2 0.8 -11.6 75 75 A S S S- 0 0 72 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.584 73.0 -96.6 -94.6 158.6 -2.6 2.7 -8.5 76 76 A L E +F 70 0B 121 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.523 46.4 179.3 -75.7 145.1 -0.6 5.2 -6.4 77 77 A M E -F 69 0B 84 -8,-2.6 -8,-2.0 -2,-0.2 2,-0.5 -0.930 34.0-108.4-137.0 160.0 1.0 3.8 -3.3 78 78 A I E -F 68 0B 92 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.820 27.5-175.4 -86.4 129.0 3.2 5.1 -0.5 79 79 A D S S- 0 0 76 -12,-3.3 2,-0.3 -2,-0.5 -1,-0.2 0.925 73.5 -24.5 -81.3 -68.5 6.7 3.7 -0.9 80 80 A R S S- 0 0 79 -13,-0.6 2,-0.5 -14,-0.2 -1,-0.3 -0.970 71.4-112.0-142.7 134.5 8.2 5.2 2.3 81 81 A L - 0 0 30 -2,-0.3 2,-0.4 -3,-0.1 -33,-0.2 -0.541 39.9-173.3 -70.6 114.5 6.8 8.3 4.1 82 82 A R - 0 0 45 -2,-0.5 -18,-2.9 -18,-0.4 2,-0.3 -0.950 7.1-151.6-113.5 133.4 9.6 10.9 3.7 83 83 A L E -E 63 0A 12 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.717 14.6-170.1-114.2 154.2 9.3 14.2 5.5 84 84 A V E -E 62 0A 49 -22,-2.3 -22,-2.8 -2,-0.3 -2,-0.0 -0.985 41.5 -89.2-134.3 146.6 10.4 17.8 5.0 85 85 A P E E 61 0A 107 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.220 360.0 360.0 -58.3 138.4 10.2 20.7 7.5 86 86 A A 0 0 102 -26,-2.0 -26,-0.1 -82,-0.1 -83,-0.0 -0.352 360.0 360.0 -73.6 360.0 7.0 22.7 7.3