==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQB . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,H.ZHANG,D.H.LESCHNITZER,Y.GUAN,H.BELLAMY,R.M.SWE . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6503.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 210 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 141.4 -0.8 19.1 2.7 2 2 A I - 0 0 68 61,-0.1 2,-0.5 35,-0.0 61,-0.4 -0.778 360.0-141.2 -86.8 128.4 -0.5 16.4 5.3 3 3 A K - 0 0 117 -2,-0.5 33,-2.1 33,-0.4 2,-0.4 -0.793 23.4-179.3 -90.6 122.7 0.5 17.8 8.8 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.7 -2,-0.5 2,-0.4 -0.973 6.6-163.9-122.3 139.0 2.9 15.4 10.6 5 5 A E E -AB 34 60A 61 29,-3.1 29,-2.6 -2,-0.4 2,-0.6 -0.992 14.4-156.6-126.4 133.3 4.3 16.1 14.1 6 6 A I E - B 0 59A 1 53,-2.4 53,-1.9 -2,-0.4 27,-0.1 -0.954 26.2-148.9 -98.8 115.8 7.3 14.6 15.9 7 7 A K > - 0 0 78 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.409 27.7-103.4 -77.5 161.3 6.5 15.1 19.6 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.9 0, 0.0 -1,-0.1 0.824 123.5 56.8 -52.4 -31.2 9.4 15.6 22.1 9 9 A S G 3 S+ 0 0 110 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.534 101.8 57.0 -78.5 -4.7 8.9 12.0 23.3 10 10 A Q G < + 0 0 14 -3,-2.0 22,-0.2 1,-0.1 -1,-0.2 0.160 68.6 113.7-112.9 18.8 9.4 10.7 19.7 11 11 A A < + 0 0 43 -3,-0.9 2,-0.3 -4,-0.1 -1,-0.1 0.379 66.5 64.2 -74.8 -1.2 12.9 12.1 19.1 12 12 A Q - 0 0 135 -3,-0.2 20,-0.4 42,-0.1 2,-0.3 -0.825 67.4-142.0-118.8 163.1 14.7 8.7 18.9 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.810 7.6-144.1-116.1 161.4 14.6 5.7 16.6 14 14 A T E -C 30 0A 99 16,-2.3 16,-2.9 -2,-0.3 2,-0.4 -0.857 17.3-134.9-115.2 163.5 14.8 2.0 17.3 15 15 A T E -C 29 0A 78 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.963 13.2-167.3-124.9 129.9 16.6 -0.5 15.1 16 16 A R E -C 28 0A 137 12,-2.6 12,-3.0 -2,-0.4 2,-0.3 -0.873 16.1-170.9-110.4 151.4 15.4 -3.9 13.9 17 17 A S E +C 27 0A 81 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.876 17.3 130.9-138.1 166.8 17.8 -6.3 12.2 18 18 A G E -C 26 0A 27 8,-1.5 8,-2.3 -2,-0.3 2,-0.4 -0.982 47.0 -79.2 174.0-167.6 18.0 -9.6 10.3 19 19 A V E -C 25 0A 99 -2,-0.3 5,-0.1 6,-0.2 4,-0.0 -0.986 36.5-124.9-130.0 129.4 19.3 -11.4 7.3 20 20 A S > - 0 0 43 4,-3.0 3,-2.0 -2,-0.4 6,-0.0 -0.087 39.4 -90.5 -63.1 168.2 17.9 -11.4 3.7 21 21 A R T 3 S+ 0 0 117 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.805 126.0 39.6 -51.0 -38.0 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 180 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.014 128.0 -85.9-110.6 31.8 20.3 -14.9 0.2 23 23 A G S < S+ 0 0 48 -3,-2.0 -2,-0.1 1,-0.2 0, 0.0 0.151 77.5 135.8 99.4 -17.5 22.5 -14.0 3.2 24 24 A K - 0 0 151 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.411 50.8-124.5 -68.2 134.4 22.9 -10.2 3.3 25 25 A P E -C 19 0A 98 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.454 30.2-171.9 -66.9 146.2 22.6 -8.4 6.7 26 26 A Y E -C 18 0A 85 -8,-2.3 -8,-1.5 -2,-0.1 2,-0.4 -0.982 13.7-164.0-137.1 158.3 20.0 -5.5 7.0 27 27 A S E -C 17 0A 75 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.2 -0.997 4.9-165.3-139.0 134.1 19.1 -2.9 9.5 28 28 A L E -C 16 0A 52 -12,-3.0 -12,-2.6 -2,-0.4 2,-0.4 -0.984 8.2-151.5-122.3 125.5 16.0 -0.8 9.6 29 29 A N E -C 15 0A 38 -2,-0.5 20,-2.6 20,-0.3 2,-0.4 -0.823 15.9-166.4 -94.5 131.0 15.5 2.3 11.7 30 30 A E E -CD 14 48A 50 -16,-2.9 -16,-2.3 -2,-0.4 2,-0.3 -0.939 8.5-178.7-123.7 138.3 12.0 3.1 12.9 31 31 A Q E - D 0 47A 3 16,-2.6 16,-3.0 -2,-0.4 2,-0.2 -0.969 19.9-130.6-131.2 149.6 10.5 6.3 14.4 32 32 A L E + D 0 46A 76 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.677 29.8 164.3 -99.4 154.5 7.0 7.2 15.6 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.4 -2,-0.2 2,-0.5 -0.927 34.4-111.4-152.7 172.2 5.0 10.3 14.7 34 34 A Y E -AD 5 44A 83 -29,-2.6 -29,-3.1 -2,-0.3 2,-0.4 -0.981 26.4-166.6-113.8 132.5 1.5 11.8 14.7 35 35 A V E -AD 4 43A 10 8,-2.3 8,-2.7 -2,-0.5 2,-0.8 -0.961 18.8-133.4-120.5 131.5 -0.4 12.4 11.5 36 36 A D + 0 0 68 -33,-2.1 -33,-0.4 -2,-0.4 -2,-0.0 -0.754 28.7 169.4 -88.8 109.7 -3.5 14.5 11.3 37 37 A L - 0 0 110 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.100 62.7 -97.4-104.3 19.7 -6.1 12.7 9.3 38 38 A G S S+ 0 0 66 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.674 85.2 125.1 76.4 16.3 -8.9 15.0 10.2 39 39 A N S S- 0 0 106 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.259 85.0 -80.7 -88.5-170.6 -10.4 13.0 13.1 40 40 A E S S+ 0 0 187 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 0.866 116.2 15.2 -65.4 -29.6 -10.8 14.4 16.6 41 41 A Y S S- 0 0 190 -4,-0.0 -2,-0.3 1,-0.0 -4,-0.3 -0.960 92.2 -95.3-135.7 154.2 -7.1 13.8 17.4 42 42 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.253 44.5-125.7 -55.9 151.0 -4.0 13.0 15.3 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.3 -4,-0.0 2,-0.4 -0.783 17.3-105.8-108.5 150.3 -3.1 9.3 15.0 44 44 A L E -D 34 0A 100 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.593 40.2-178.4 -75.4 130.3 0.1 7.4 15.7 45 45 A V E -D 33 0A 44 -12,-2.4 -12,-1.9 -2,-0.4 2,-0.4 -0.982 22.6-132.0-131.1 135.4 2.1 6.3 12.6 46 46 A K E -D 32 0A 165 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.770 19.9-161.7 -88.6 133.8 5.3 4.3 12.3 47 47 A I E -D 31 0A 4 -16,-3.0 -16,-2.6 -2,-0.4 2,-0.6 -0.931 8.5-152.2-110.1 133.8 8.0 5.7 9.9 48 48 A T E -D 30 0A 35 -2,-0.4 -18,-0.2 -18,-0.2 33,-0.0 -0.953 25.1-138.4-104.4 121.4 10.9 3.6 8.5 49 49 A L - 0 0 6 -20,-2.6 -20,-0.3 -2,-0.6 2,-0.2 -0.268 15.3-107.4 -74.2 160.0 13.8 5.9 7.8 50 50 A D > - 0 0 49 1,-0.1 3,-1.7 4,-0.1 -1,-0.1 -0.541 52.1 -73.4 -83.9 160.4 16.1 5.7 4.8 51 51 A E T 3 S+ 0 0 196 1,-0.2 -1,-0.1 -2,-0.2 -23,-0.0 -0.184 116.4 8.2 -53.8 133.4 19.7 4.5 5.0 52 52 A G T 3 S+ 0 0 79 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.562 96.4 130.2 74.2 7.5 22.2 6.9 6.7 53 53 A Q < - 0 0 54 -3,-1.7 -1,-0.2 -24,-0.0 3,-0.1 -0.813 51.7-134.4 -99.4 131.7 19.4 9.3 7.8 54 54 A P - 0 0 96 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.270 39.4 -80.9 -66.7 163.3 19.2 10.5 11.5 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.388 53.6-104.0 -60.7 141.1 15.9 10.6 13.4 56 56 A Y - 0 0 23 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.533 38.6-118.5 -63.7 136.8 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.354 42.7 -77.9 -69.4 158.2 14.0 16.3 15.3 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.299 88.1 80.3 -53.8 140.4 10.7 17.3 17.2 59 59 A G E S-B 6 0A 28 -53,-1.9 -53,-2.4 -3,-0.1 2,-0.4 -0.929 79.6 -49.3 150.7-175.3 8.6 19.7 15.2 60 60 A L E +B 5 0A 85 -2,-0.3 26,-1.9 -55,-0.2 2,-0.3 -0.754 52.9 168.5 -99.9 138.3 6.1 20.2 12.4 61 61 A Y E -BE 4 85A 26 -57,-2.7 -57,-2.5 -2,-0.4 2,-0.3 -0.917 22.3-148.2-140.4 162.1 6.6 18.5 9.0 62 62 A T E - E 0 84A 20 22,-2.7 22,-2.3 -2,-0.3 2,-0.4 -0.818 37.6 -88.7-127.3 176.1 4.8 17.8 5.7 63 63 A V E - E 0 83A 23 -61,-0.4 20,-0.2 -2,-0.3 2,-0.2 -0.738 35.4-133.7 -92.1 129.4 5.2 14.8 3.3 64 64 A H > - 0 0 88 18,-3.1 3,-2.0 -2,-0.4 18,-0.4 -0.484 20.4-119.0 -77.7 150.2 7.8 15.0 0.4 65 65 A L G > S+ 0 0 141 1,-0.3 3,-1.7 -2,-0.2 -1,-0.1 0.759 108.6 72.5 -55.4 -32.3 6.8 13.9 -3.1 66 66 A S G 3 S+ 0 0 56 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.527 77.9 79.7 -63.7 -5.5 9.4 11.2 -3.1 67 67 A S G < S+ 0 0 0 -3,-2.0 12,-3.4 15,-0.2 13,-0.5 0.687 86.6 73.0 -70.3 -20.2 7.2 9.3 -0.6 68 68 A F E < +F 78 0B 73 -3,-1.7 2,-0.3 10,-0.2 10,-0.2 -0.650 51.4 163.5-108.7 151.7 5.0 8.1 -3.5 69 69 A K E -F 77 0B 105 8,-2.1 8,-2.7 -2,-0.2 2,-0.5 -0.973 43.3 -99.9-151.2 160.2 5.4 5.5 -6.4 70 70 A V E -F 76 0B 97 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.813 45.5-140.0 -86.8 128.8 3.2 3.7 -8.8 71 71 A G > - 0 0 14 4,-2.7 3,-1.8 -2,-0.5 -1,-0.1 -0.108 28.8 -88.5 -80.0 179.1 2.5 0.2 -7.6 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.633 125.5 52.2 -71.0 -11.5 2.4 -3.1 -9.4 73 73 A F T 3 S- 0 0 177 2,-0.2 -1,-0.3 3,-0.0 3,-0.1 0.276 119.8-104.6-102.3 13.1 -1.4 -2.7 -10.1 74 74 A G S < S+ 0 0 60 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.451 84.2 117.3 83.6 2.6 -1.0 0.8 -11.7 75 75 A S S S- 0 0 70 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.624 73.0 -95.8 -99.4 159.4 -2.4 2.7 -8.6 76 76 A L E +F 70 0B 123 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.520 47.4 177.1 -75.7 142.5 -0.5 5.2 -6.5 77 77 A M E -F 69 0B 87 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.950 34.0-107.5-135.8 164.7 1.1 3.9 -3.3 78 78 A I E -F 68 0B 94 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.799 26.5-176.1 -90.8 129.7 3.2 5.2 -0.4 79 79 A D S S- 0 0 75 -12,-3.4 2,-0.3 -2,-0.5 -1,-0.2 0.915 72.2 -25.2 -82.8 -68.4 6.8 3.8 -0.6 80 80 A R S S- 0 0 79 -13,-0.5 2,-0.7 -14,-0.2 -1,-0.4 -0.980 70.9-108.1-142.9 140.5 8.2 5.3 2.6 81 81 A L - 0 0 27 -2,-0.3 2,-0.5 -3,-0.1 -33,-0.1 -0.582 40.9-172.5 -72.2 110.7 6.9 8.4 4.4 82 82 A R - 0 0 42 -2,-0.7 -18,-3.1 -18,-0.4 2,-0.3 -0.927 8.5-153.2-110.7 128.2 9.7 10.9 3.7 83 83 A L E -E 63 0A 13 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.768 16.4-171.5-110.1 151.6 9.3 14.3 5.5 84 84 A V E -E 62 0A 51 -22,-2.3 -22,-2.7 -2,-0.3 -2,-0.0 -0.984 41.5 -88.8-133.6 149.0 10.4 17.9 5.0 85 85 A P E E 61 0A 108 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.238 360.0 360.0 -60.7 137.9 10.1 20.8 7.5 86 86 A A 0 0 100 -26,-1.9 -26,-0.1 -82,-0.1 -83,-0.0 -0.301 360.0 360.0 -72.4 360.0 6.9 22.7 7.4