==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQC . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6537.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 136.9 -0.8 19.2 2.7 2 2 A I - 0 0 70 61,-0.1 2,-0.6 35,-0.0 61,-0.4 -0.762 360.0-141.3 -85.4 129.6 -0.5 16.4 5.3 3 3 A K - 0 0 116 -2,-0.5 33,-1.9 33,-0.4 2,-0.4 -0.854 22.4-177.3 -94.9 117.3 0.5 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.7 57,-2.9 -2,-0.6 2,-0.4 -0.964 5.5-164.4-115.3 138.7 3.0 15.5 10.5 5 5 A E E -AB 34 60A 63 29,-3.1 29,-2.7 -2,-0.4 2,-0.6 -0.992 13.5-156.7-125.8 132.9 4.4 16.2 14.0 6 6 A I E - B 0 59A 1 53,-2.7 53,-2.0 -2,-0.4 27,-0.1 -0.951 25.4-148.6 -97.3 115.5 7.4 14.7 15.8 7 7 A K > - 0 0 76 -2,-0.6 3,-2.1 51,-0.2 4,-0.1 -0.392 27.8-103.3 -76.4 160.7 6.7 15.1 19.6 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 0.807 123.9 55.5 -50.6 -34.1 9.6 15.6 22.1 9 9 A S G 3 S+ 0 0 108 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.470 102.0 57.5 -75.7 -7.2 9.1 11.9 23.1 10 10 A Q G < + 0 0 13 -3,-2.1 22,-0.3 1,-0.1 -1,-0.2 0.185 67.8 113.5-110.2 13.2 9.5 10.7 19.5 11 11 A A < + 0 0 43 -3,-0.7 2,-0.3 -4,-0.1 -1,-0.1 0.322 67.7 63.9 -68.3 5.7 13.0 12.1 18.9 12 12 A Q - 0 0 137 -3,-0.2 20,-0.4 20,-0.1 2,-0.3 -0.837 66.7-141.0-130.5 161.1 14.7 8.7 18.7 13 13 A F - 0 0 55 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.831 8.1-144.1-115.5 161.4 14.6 5.7 16.4 14 14 A T E -C 30 0A 98 16,-2.1 16,-2.6 -2,-0.3 2,-0.4 -0.854 17.9-135.1-115.7 162.7 14.8 2.0 17.2 15 15 A T E -C 29 0A 77 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.958 13.6-168.0-124.5 131.6 16.6 -0.5 15.0 16 16 A R E -C 28 0A 135 12,-2.7 12,-2.8 -2,-0.4 2,-0.3 -0.889 15.6-167.1-112.4 152.7 15.5 -3.9 13.8 17 17 A S E +C 27 0A 80 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.878 19.0 126.9-137.0 166.7 17.8 -6.4 12.1 18 18 A G E -C 26 0A 28 8,-1.6 8,-2.3 -2,-0.3 2,-0.4 -0.971 46.5 -78.4 175.2-163.8 18.0 -9.6 10.2 19 19 A V E -C 25 0A 96 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.990 36.0-124.0-133.6 131.0 19.3 -11.4 7.1 20 20 A S > - 0 0 44 4,-2.9 3,-2.2 -2,-0.4 6,-0.0 -0.141 41.1 -89.5 -66.0 168.4 18.0 -11.3 3.5 21 21 A R T 3 S+ 0 0 117 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.759 127.4 41.6 -52.9 -32.0 16.9 -14.5 1.5 22 22 A Q T 3 S- 0 0 184 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 0.028 127.4 -89.1-108.4 27.8 20.4 -14.9 0.1 23 23 A G S < S+ 0 0 49 -3,-2.2 -2,-0.1 1,-0.2 0, 0.0 0.302 76.4 138.2 94.9 -11.1 22.4 -14.1 3.3 24 24 A K - 0 0 151 -5,-0.1 -4,-2.9 1,-0.1 -1,-0.2 -0.502 50.5-124.5 -71.3 132.1 23.1 -10.3 3.3 25 25 A P E -C 19 0A 99 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.425 31.5-175.5 -64.2 147.5 22.7 -8.5 6.7 26 26 A Y E -C 18 0A 90 -8,-2.3 -8,-1.6 -2,-0.1 2,-0.3 -0.986 15.0-161.3-140.7 158.8 20.2 -5.5 6.9 27 27 A S E -C 17 0A 80 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.997 5.4-163.8-137.8 138.7 19.2 -2.9 9.5 28 28 A L E -C 16 0A 59 -12,-2.8 -12,-2.7 -2,-0.3 2,-0.5 -0.994 8.0-151.1-125.9 129.6 16.0 -0.9 9.5 29 29 A N E -C 15 0A 37 -2,-0.4 20,-2.9 20,-0.4 2,-0.4 -0.851 15.7-166.5-100.8 128.4 15.6 2.3 11.6 30 30 A E E -CD 14 48A 51 -16,-2.6 -16,-2.1 -2,-0.5 2,-0.3 -0.930 7.5-177.9-121.3 140.1 12.0 3.1 12.6 31 31 A Q E - D 0 47A 3 16,-2.4 16,-2.4 -2,-0.4 2,-0.3 -0.930 17.9-131.2-133.8 156.0 10.6 6.3 14.1 32 32 A L E + D 0 46A 75 -20,-0.4 2,-0.3 -22,-0.3 14,-0.2 -0.778 27.1 164.4-108.2 152.2 7.1 7.3 15.3 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.7 -2,-0.3 2,-0.5 -0.943 34.0-112.5-150.6 173.9 5.1 10.4 14.6 34 34 A Y E -AD 5 44A 82 -29,-2.7 -29,-3.1 -2,-0.3 2,-0.4 -0.963 27.7-167.2-114.5 132.8 1.6 11.9 14.8 35 35 A I E -AD 4 43A 12 8,-2.5 8,-2.7 -2,-0.5 2,-0.9 -0.976 20.5-131.8-123.3 134.6 -0.3 12.6 11.6 36 36 A D + 0 0 70 -33,-1.9 -33,-0.4 -2,-0.4 4,-0.0 -0.712 29.4 170.2 -84.5 106.3 -3.5 14.6 11.4 37 37 A L - 0 0 108 -2,-0.9 -1,-0.2 4,-0.3 3,-0.1 0.136 62.6 -95.1-102.9 20.9 -5.9 12.6 9.3 38 38 A G S S+ 0 0 65 1,-0.2 -2,-0.1 2,-0.0 2,-0.1 0.610 87.9 122.1 80.4 10.4 -8.9 14.8 10.1 39 39 A N S S- 0 0 104 2,-0.2 -1,-0.2 1,-0.0 4,-0.0 -0.254 85.2 -81.8 -89.6-172.3 -10.2 12.8 13.0 40 40 A E S S+ 0 0 189 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 0.861 114.7 15.6 -67.3 -29.4 -10.7 14.2 16.6 41 41 A Y S S- 0 0 191 -6,-0.1 -4,-0.3 -4,-0.0 -2,-0.2 -0.963 93.9 -93.0-135.1 151.8 -7.0 13.8 17.5 42 42 A P - 0 0 59 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.249 46.4-124.3 -52.0 149.7 -3.9 13.1 15.4 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.5 -4,-0.0 2,-0.4 -0.773 15.7-108.7-107.8 151.3 -3.0 9.4 15.0 44 44 A L E -D 34 0A 100 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.574 40.1-178.4 -74.2 126.7 0.2 7.5 15.8 45 45 A V E -D 33 0A 41 -12,-2.7 -12,-1.9 -2,-0.4 2,-0.3 -0.991 16.2-149.3-130.1 135.8 2.1 6.4 12.7 46 46 A K E +D 32 0A 162 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.754 20.2 175.9-101.0 147.6 5.3 4.4 12.4 47 47 A F E -D 31 0A 10 -16,-2.4 -16,-2.4 -2,-0.3 2,-0.4 -0.978 27.1-122.5-147.8 157.1 7.8 4.8 9.5 48 48 A T E -D 30 0A 30 -2,-0.3 -18,-0.2 -18,-0.2 2,-0.2 -0.839 26.6-132.9 -99.5 139.2 11.2 3.5 8.3 49 49 A L - 0 0 10 -20,-2.9 -20,-0.4 -2,-0.4 2,-0.1 -0.539 24.6-105.7 -82.9 154.3 14.0 5.9 7.7 50 50 A D > - 0 0 46 -2,-0.2 3,-1.8 1,-0.1 -1,-0.1 -0.439 54.3 -75.2 -73.7 157.8 16.2 5.8 4.6 51 51 A E T 3 S+ 0 0 200 1,-0.3 -1,-0.1 -2,-0.1 -23,-0.0 -0.252 116.9 11.1 -55.6 134.9 19.8 4.5 5.0 52 52 A G T 3 S+ 0 0 77 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.553 95.3 129.9 74.5 10.2 22.2 6.9 6.7 53 53 A Q < - 0 0 81 -3,-1.8 -1,-0.2 -24,-0.0 -4,-0.1 -0.821 52.2-134.5 -98.4 131.0 19.5 9.3 7.8 54 54 A P - 0 0 96 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.304 40.3 -80.9 -67.0 164.7 19.3 10.5 11.4 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.415 54.0-102.9 -62.4 140.7 16.0 10.6 13.3 56 56 A Y - 0 0 28 -46,-0.1 -1,-0.1 -44,-0.1 3,-0.1 -0.499 39.6-118.4 -63.1 140.1 13.9 13.7 12.4 57 57 A A - 0 0 60 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.359 42.7 -76.0 -74.3 161.4 14.1 16.3 15.2 58 58 A P S S+ 0 0 68 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.275 88.6 75.3 -57.8 139.4 10.9 17.4 17.2 59 59 A G E S-B 6 0A 26 -53,-2.0 -53,-2.7 -3,-0.1 2,-0.4 -0.914 79.8 -45.0 151.9-174.6 8.7 19.7 15.1 60 60 A L E +B 5 0A 83 -2,-0.3 26,-2.1 -55,-0.2 2,-0.3 -0.740 51.6 167.7 -97.8 137.0 6.3 20.2 12.3 61 61 A Y E -BE 4 85A 26 -57,-2.9 -57,-2.7 -2,-0.4 2,-0.3 -0.910 22.9-148.0-138.0 163.0 6.7 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.6 22,-2.2 -2,-0.3 2,-0.4 -0.816 38.3 -90.8-125.6 172.7 4.8 17.8 5.6 63 63 A V E - E 0 83A 22 -61,-0.4 20,-0.2 -2,-0.3 2,-0.1 -0.727 35.4-131.6 -91.8 131.1 5.3 14.8 3.2 64 64 A H > - 0 0 84 18,-3.0 3,-2.1 -2,-0.4 18,-0.3 -0.469 19.6-118.9 -77.4 151.5 7.8 15.0 0.3 65 65 A L G > S+ 0 0 143 1,-0.3 3,-1.8 2,-0.2 -1,-0.1 0.786 109.1 71.2 -58.6 -29.6 6.7 13.9 -3.2 66 66 A S G 3 S+ 0 0 54 1,-0.3 -1,-0.3 12,-0.0 14,-0.2 0.535 78.3 79.5 -67.9 -5.3 9.4 11.2 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.1 12,-3.5 15,-0.2 13,-0.8 0.713 86.9 73.2 -69.4 -18.3 7.2 9.3 -0.7 68 68 A F E < +F 78 0B 71 -3,-1.8 2,-0.3 10,-0.2 10,-0.2 -0.645 52.5 165.9-107.3 151.4 5.0 8.1 -3.5 69 69 A K E -F 77 0B 103 8,-2.2 8,-2.7 -2,-0.2 2,-0.6 -0.964 41.7-103.5-148.7 161.3 5.3 5.5 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 8,-0.0 -0.838 46.0-141.2 -87.2 128.1 3.1 3.8 -8.9 71 71 A G > - 0 0 15 4,-3.0 3,-1.9 -2,-0.6 -1,-0.1 -0.090 28.9 -86.7 -78.6-179.0 2.6 0.2 -7.7 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.658 126.0 53.7 -69.1 -13.5 2.4 -3.1 -9.5 73 73 A F T 3 S- 0 0 177 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.284 120.3-104.3-101.6 8.8 -1.4 -2.7 -10.2 74 74 A G S < S+ 0 0 60 -3,-1.9 2,-0.2 1,-0.3 -2,-0.1 0.490 85.1 115.2 86.2 5.0 -1.0 0.8 -11.8 75 75 A S S S- 0 0 69 1,-0.1 -4,-3.0 -5,-0.0 -1,-0.3 -0.623 72.8 -92.2-105.3 162.1 -2.3 2.7 -8.7 76 76 A L E +F 70 0B 121 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.529 46.5 174.9 -76.0 141.2 -0.5 5.2 -6.4 77 77 A M E -F 69 0B 85 -8,-2.7 -8,-2.2 -2,-0.2 2,-0.5 -0.942 35.5-110.3-138.0 160.0 1.1 3.8 -3.3 78 78 A I E -F 68 0B 99 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.819 26.9-175.1 -88.5 128.4 3.3 5.2 -0.5 79 79 A D - 0 0 83 -12,-3.5 2,-0.3 -2,-0.5 -1,-0.2 0.915 70.0 -25.0 -82.9 -59.7 6.8 3.8 -0.8 80 80 A R S S- 0 0 72 -13,-0.8 2,-0.6 -14,-0.2 -1,-0.3 -0.954 70.4-105.6-153.7 136.0 8.2 5.2 2.5 81 81 A L - 0 0 21 -2,-0.3 2,-0.5 -3,-0.1 -18,-0.0 -0.552 41.6-176.6 -68.9 111.7 7.1 8.3 4.4 82 82 A R - 0 0 41 -2,-0.6 -18,-3.0 -18,-0.3 2,-0.3 -0.957 10.0-154.7-114.2 130.6 9.8 11.0 3.7 83 83 A L E -E 63 0A 12 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.757 16.0-169.9-113.3 152.2 9.4 14.3 5.4 84 84 A V E -E 62 0A 49 -22,-2.2 -22,-2.6 -2,-0.3 -2,-0.0 -0.988 40.5 -90.4-135.3 146.8 10.4 17.9 4.9 85 85 A P E E 61 0A 105 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.187 360.0 360.0 -60.7 141.3 10.2 20.8 7.4 86 86 A A 0 0 103 -26,-2.1 -26,-0.1 -82,-0.1 -83,-0.0 -0.292 360.0 360.0 -70.0 360.0 7.0 22.8 7.4