==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQD . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6496.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 212 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 138.4 -0.8 19.1 2.7 2 2 A I - 0 0 66 61,-0.1 2,-0.5 35,-0.0 61,-0.4 -0.748 360.0-141.6 -82.7 127.5 -0.5 16.4 5.3 3 3 A K - 0 0 115 -2,-0.5 33,-1.8 33,-0.4 2,-0.4 -0.839 22.8-178.4 -91.5 121.5 0.6 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.8 -2,-0.5 2,-0.4 -0.960 5.9-164.8-121.7 138.7 3.0 15.5 10.5 5 5 A E E -AB 34 60A 60 29,-3.2 29,-2.5 -2,-0.4 2,-0.6 -0.989 14.0-156.3-127.0 132.6 4.4 16.2 13.9 6 6 A I E - B 0 59A 1 53,-2.4 53,-2.0 -2,-0.4 27,-0.1 -0.957 26.2-148.3 -98.3 117.3 7.3 14.6 15.7 7 7 A K > - 0 0 78 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.423 27.4-103.8 -78.0 161.7 6.6 15.2 19.5 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.9 0, 0.0 -1,-0.1 0.827 123.5 56.2 -52.5 -33.6 9.4 15.6 22.0 9 9 A S G 3 S+ 0 0 111 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.526 102.3 56.8 -74.9 -9.3 8.9 12.0 23.2 10 10 A Q G < + 0 0 13 -3,-2.0 -1,-0.2 1,-0.1 22,-0.2 0.184 69.1 113.4-108.7 14.8 9.4 10.7 19.6 11 11 A A < + 0 0 42 -3,-0.9 2,-0.3 -4,-0.1 -1,-0.1 0.489 66.5 66.5 -70.8 -4.3 12.9 12.2 19.0 12 12 A Q - 0 0 136 -3,-0.2 20,-0.4 42,-0.1 2,-0.3 -0.771 66.7-143.1-114.9 159.6 14.6 8.8 18.9 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.781 7.5-145.5-112.1 158.8 14.6 5.8 16.6 14 14 A T E -C 30 0A 97 16,-2.2 16,-2.8 -2,-0.3 2,-0.4 -0.863 16.6-135.4-113.4 163.6 14.9 2.1 17.3 15 15 A T E -C 29 0A 79 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.963 13.4-168.2-126.7 129.7 16.6 -0.5 15.0 16 16 A R E -C 28 0A 134 12,-2.5 12,-2.8 -2,-0.4 2,-0.3 -0.864 15.9-171.2-111.0 152.6 15.5 -3.9 13.8 17 17 A S E +C 27 0A 81 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.876 17.2 128.5-139.8 166.7 17.8 -6.3 12.1 18 18 A G E -C 26 0A 25 8,-1.5 8,-2.2 -2,-0.3 2,-0.4 -0.980 47.3 -75.7 172.9-165.9 18.1 -9.6 10.3 19 19 A V E -C 25 0A 99 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.982 37.0-126.4-128.6 128.7 19.3 -11.5 7.2 20 20 A S > - 0 0 43 4,-3.0 3,-2.0 -2,-0.4 6,-0.0 -0.117 39.7 -89.5 -63.2 167.0 17.9 -11.4 3.7 21 21 A R T 3 S+ 0 0 118 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.775 125.7 39.1 -48.9 -36.6 16.9 -14.5 1.6 22 22 A Q T 3 S- 0 0 177 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.038 128.1 -83.1-111.9 31.8 20.3 -14.9 0.1 23 23 A G S < S+ 0 0 48 -3,-2.0 -2,-0.1 1,-0.2 0, 0.0 0.149 79.4 134.6 100.1 -18.3 22.6 -14.1 3.1 24 24 A K - 0 0 150 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.484 49.7-129.2 -70.5 129.3 22.9 -10.2 3.2 25 25 A P E -C 19 0A 96 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.380 27.9-173.3 -65.1 147.1 22.5 -8.4 6.6 26 26 A Y E -C 18 0A 89 -8,-2.2 -8,-1.5 -2,-0.1 2,-0.3 -0.980 14.1-161.9-138.2 158.5 20.1 -5.5 6.9 27 27 A S E -C 17 0A 78 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.994 5.9-164.1-139.4 134.5 19.2 -2.9 9.5 28 28 A L E -C 16 0A 51 -12,-2.8 -12,-2.5 -2,-0.3 2,-0.4 -0.987 7.8-151.2-120.9 125.1 16.0 -0.8 9.6 29 29 A N E -C 15 0A 37 -2,-0.4 20,-2.8 20,-0.3 2,-0.4 -0.818 16.0-166.7 -95.6 129.2 15.6 2.3 11.7 30 30 A E E -CD 14 48A 51 -16,-2.8 -16,-2.2 -2,-0.4 2,-0.3 -0.936 8.6-179.8-121.3 139.3 12.0 3.1 12.8 31 31 A Q E - D 0 47A 3 16,-2.3 16,-3.5 -2,-0.4 2,-0.2 -0.982 20.2-130.3-133.9 148.4 10.6 6.3 14.3 32 32 A L E + D 0 46A 76 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.645 29.0 165.7 -97.9 155.5 7.0 7.3 15.5 33 33 A C E - D 0 45A 0 12,-1.7 12,-2.4 -2,-0.2 2,-0.4 -0.935 32.9-113.1-152.7 171.2 5.0 10.4 14.6 34 34 A Y E -AD 5 44A 84 -29,-2.5 -29,-3.2 -2,-0.3 2,-0.4 -0.976 26.5-168.4-113.9 133.6 1.6 11.9 14.7 35 35 A I E -AD 4 43A 12 8,-2.2 8,-2.7 -2,-0.4 2,-0.8 -0.987 20.7-131.9-126.3 131.2 -0.4 12.6 11.5 36 36 A D + 0 0 70 -33,-1.8 -33,-0.4 -2,-0.4 4,-0.0 -0.729 28.9 170.2 -84.1 109.3 -3.5 14.6 11.4 37 37 A L - 0 0 111 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.086 62.6 -95.5-104.6 20.4 -6.0 12.6 9.3 38 38 A G S S+ 0 0 65 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.608 87.2 122.5 81.0 11.7 -8.9 14.9 10.1 39 39 A N S S- 0 0 105 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.269 85.5 -82.2 -88.2-172.8 -10.3 12.9 13.1 40 40 A E S S+ 0 0 187 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 0.874 115.0 16.3 -64.5 -32.7 -10.8 14.4 16.6 41 41 A Y S S- 0 0 190 -6,-0.1 -2,-0.3 -4,-0.0 -4,-0.3 -0.953 93.0 -94.6-131.5 152.6 -7.1 13.8 17.4 42 42 A P - 0 0 56 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.258 44.1-125.3 -52.4 150.8 -3.9 13.0 15.3 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.2 -4,-0.0 2,-0.4 -0.778 17.0-107.6-107.3 152.4 -3.1 9.3 14.9 44 44 A L E -D 34 0A 99 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.598 39.9-178.9 -77.0 131.1 0.2 7.4 15.7 45 45 A V E -D 33 0A 43 -12,-2.4 -12,-1.7 -2,-0.4 2,-0.4 -0.984 23.2-129.2-133.8 136.0 2.1 6.3 12.6 46 46 A K E -D 32 0A 162 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.756 20.7-160.0 -88.6 131.7 5.4 4.3 12.2 47 47 A L E -D 31 0A 3 -16,-3.5 -16,-2.3 -2,-0.4 2,-0.5 -0.873 7.4-152.9-104.8 140.4 8.1 5.7 9.9 48 48 A T E -D 30 0A 39 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.0 -0.980 23.7-139.3-110.8 121.8 11.0 3.6 8.5 49 49 A L - 0 0 8 -20,-2.8 -20,-0.3 -2,-0.5 2,-0.2 -0.291 15.0-109.6 -79.9 158.8 14.0 5.9 7.8 50 50 A D > - 0 0 48 4,-0.1 3,-1.8 1,-0.1 -1,-0.1 -0.589 52.1 -73.0 -83.4 160.0 16.2 5.7 4.7 51 51 A E T 3 S+ 0 0 200 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.0 -0.168 116.4 7.4 -56.4 134.7 19.8 4.5 5.0 52 52 A G T 3 S+ 0 0 78 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.557 96.2 129.3 71.2 12.4 22.2 6.9 6.7 53 53 A Q < - 0 0 56 -3,-1.8 -1,-0.2 -24,-0.0 3,-0.1 -0.830 52.4-133.3 -99.1 133.0 19.5 9.3 7.7 54 54 A P - 0 0 98 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.248 39.5 -80.0 -66.6 166.9 19.2 10.6 11.4 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.398 53.9-102.4 -65.6 144.2 16.0 10.7 13.3 56 56 A Y - 0 0 22 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.521 38.7-119.3 -63.4 138.5 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.326 42.2 -79.3 -72.4 156.3 14.0 16.4 15.2 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.312 87.9 76.5 -53.2 139.4 10.8 17.4 17.1 59 59 A G E S-B 6 0A 28 -53,-2.0 -53,-2.4 -3,-0.1 2,-0.4 -0.898 80.8 -45.1 150.6-171.7 8.7 19.8 15.1 60 60 A L E +B 5 0A 84 -2,-0.3 26,-2.1 -55,-0.2 2,-0.3 -0.743 52.2 169.4-101.4 139.4 6.2 20.2 12.2 61 61 A Y E -BE 4 85A 25 -57,-2.8 -57,-2.5 -2,-0.4 2,-0.3 -0.907 21.2-149.9-140.2 159.1 6.7 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.7 22,-2.3 -2,-0.3 2,-0.4 -0.792 37.8 -88.3-124.8 176.2 4.9 17.8 5.6 63 63 A V E - E 0 83A 23 -61,-0.4 20,-0.2 -2,-0.3 2,-0.2 -0.736 34.0-133.2 -93.5 129.7 5.3 14.9 3.2 64 64 A H > - 0 0 91 18,-3.0 3,-2.0 -2,-0.4 18,-0.4 -0.492 20.7-119.5 -78.4 148.0 7.9 14.9 0.3 65 65 A L G > S+ 0 0 140 1,-0.3 3,-1.8 -2,-0.2 -1,-0.1 0.796 108.0 72.5 -53.6 -30.9 6.8 13.8 -3.2 66 66 A S G 3 S+ 0 0 54 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.544 77.2 80.8 -66.5 -5.2 9.4 11.0 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.0 12,-3.3 15,-0.2 13,-0.5 0.688 86.5 71.6 -67.1 -19.7 7.2 9.2 -0.7 68 68 A F E < +F 78 0B 71 -3,-1.8 2,-0.3 10,-0.2 10,-0.2 -0.654 51.8 165.8-111.5 151.9 5.0 7.9 -3.6 69 69 A K E -F 77 0B 106 8,-2.1 8,-2.7 -2,-0.2 2,-0.5 -0.975 43.1-101.2-149.5 157.5 5.3 5.4 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.790 46.3-140.5 -83.6 127.4 3.1 3.7 -8.9 71 71 A G > - 0 0 14 4,-2.7 3,-1.8 -2,-0.5 -1,-0.1 -0.138 28.5 -88.6 -78.8 178.9 2.4 0.1 -7.6 72 72 A Q T 3 S+ 0 0 175 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.640 126.0 52.9 -71.5 -9.4 2.2 -3.2 -9.5 73 73 A F T 3 S- 0 0 177 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.321 119.7-105.9-102.8 10.4 -1.5 -2.8 -10.1 74 74 A G S < S+ 0 0 59 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.447 83.9 115.6 84.3 -1.7 -1.2 0.8 -11.6 75 75 A S S S- 0 0 71 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.622 74.3 -93.8 -95.8 160.7 -2.5 2.7 -8.6 76 76 A L E +F 70 0B 121 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.510 47.2 179.1 -75.6 142.5 -0.5 5.1 -6.4 77 77 A M E -F 69 0B 84 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.934 33.2-109.5-135.6 159.7 1.1 3.7 -3.3 78 78 A I E -F 68 0B 94 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.828 26.9-176.1 -86.9 130.1 3.2 5.0 -0.5 79 79 A D S S- 0 0 76 -12,-3.3 2,-0.3 -2,-0.5 -1,-0.2 0.924 72.7 -27.4 -83.8 -70.1 6.8 3.6 -0.8 80 80 A R S S- 0 0 78 -13,-0.5 2,-0.5 -14,-0.2 -1,-0.3 -0.970 70.5-110.8-142.3 135.5 8.2 5.1 2.4 81 81 A L - 0 0 26 -2,-0.3 2,-0.4 -3,-0.1 -33,-0.2 -0.550 38.6-171.7 -71.1 115.7 6.9 8.3 4.0 82 82 A R - 0 0 44 -2,-0.5 -18,-3.0 -18,-0.4 2,-0.3 -0.930 8.3-150.0-111.2 131.9 9.7 10.8 3.6 83 83 A L E -E 63 0A 15 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.756 16.1-171.3-112.6 153.2 9.4 14.2 5.4 84 84 A V E -E 62 0A 51 -22,-2.3 -22,-2.7 -2,-0.3 -2,-0.0 -0.987 41.4 -88.8-133.2 148.4 10.5 17.8 4.9 85 85 A P E E 61 0A 106 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.211 360.0 360.0 -60.2 137.3 10.2 20.8 7.4 86 86 A A 0 0 101 -26,-2.1 -26,-0.1 -82,-0.1 -83,-0.0 -0.304 360.0 360.0 -72.7 360.0 7.0 22.8 7.2