==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQE . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6508.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 209 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 136.5 -0.8 19.2 2.7 2 2 A I - 0 0 69 61,-0.1 2,-0.5 33,-0.0 61,-0.4 -0.739 360.0-143.8 -80.5 128.3 -0.5 16.5 5.2 3 3 A K - 0 0 118 -2,-0.5 33,-1.8 33,-0.4 2,-0.4 -0.859 21.0-176.9 -94.2 121.8 0.6 17.9 8.6 4 4 A V E -AB 35 61A 0 57,-2.6 57,-2.7 -2,-0.5 2,-0.4 -0.957 5.4-163.8-120.3 139.6 3.0 15.5 10.4 5 5 A E E -AB 34 60A 59 29,-3.2 29,-2.6 -2,-0.4 2,-0.6 -0.987 13.5-156.8-126.9 132.5 4.4 16.2 13.9 6 6 A I E - B 0 59A 1 53,-2.5 53,-2.0 -2,-0.4 27,-0.1 -0.964 25.9-147.9 -99.7 117.1 7.3 14.7 15.7 7 7 A K > - 0 0 77 -2,-0.6 3,-2.1 51,-0.2 4,-0.1 -0.424 27.3-103.8 -78.5 160.2 6.6 15.2 19.4 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.9 0, 0.0 -1,-0.1 0.832 123.6 55.6 -49.5 -35.8 9.5 15.7 22.0 9 9 A S G 3 S+ 0 0 111 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.496 102.1 57.4 -74.8 -7.3 8.9 12.1 23.1 10 10 A Q G < + 0 0 15 -3,-2.1 -1,-0.2 1,-0.1 22,-0.2 0.183 68.6 114.3-109.6 13.0 9.4 10.7 19.5 11 11 A A < + 0 0 43 -3,-0.9 2,-0.3 -4,-0.1 -1,-0.1 0.436 66.8 65.0 -66.9 -5.6 12.9 12.2 19.0 12 12 A Q - 0 0 135 -3,-0.2 20,-0.5 42,-0.1 2,-0.3 -0.777 67.2-141.2-115.7 158.5 14.6 8.8 18.7 13 13 A F - 0 0 57 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.782 8.6-145.3-111.2 159.1 14.6 5.8 16.5 14 14 A T E -C 30 0A 97 16,-2.2 16,-2.9 -2,-0.3 2,-0.4 -0.857 18.0-135.8-113.7 161.2 14.8 2.1 17.3 15 15 A T E -C 29 0A 77 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.973 14.0-168.4-125.1 129.8 16.6 -0.4 15.0 16 16 A R E -C 28 0A 132 12,-2.5 12,-2.8 -2,-0.4 2,-0.3 -0.850 16.1-173.6-110.4 153.9 15.5 -3.9 13.9 17 17 A S E +C 27 0A 76 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.864 17.5 126.2-142.1 171.0 17.8 -6.3 12.2 18 18 A G E -C 26 0A 28 8,-1.4 8,-2.1 -2,-0.3 2,-0.4 -0.975 48.5 -71.3 168.7-163.0 18.1 -9.6 10.4 19 19 A V E -C 25 0A 97 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.986 37.1-124.4-130.5 130.1 19.3 -11.4 7.3 20 20 A S > - 0 0 44 4,-3.1 3,-2.1 -2,-0.4 6,-0.0 -0.146 39.4 -91.2 -64.4 165.4 18.0 -11.4 3.7 21 21 A R T 3 S+ 0 0 117 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.763 125.0 38.7 -49.3 -35.6 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 178 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.013 128.7 -81.7-112.1 31.8 20.3 -14.9 0.1 23 23 A G S < S+ 0 0 50 -3,-2.1 -2,-0.1 1,-0.2 0, 0.0 0.082 79.4 133.8 103.3 -24.4 22.7 -14.0 3.1 24 24 A K - 0 0 149 -5,-0.1 -4,-3.1 1,-0.1 -1,-0.2 -0.388 49.5-129.3 -66.6 129.7 22.9 -10.2 3.3 25 25 A P E -C 19 0A 97 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.420 28.1-172.6 -65.7 147.7 22.6 -8.4 6.7 26 26 A Y E -C 18 0A 87 -8,-2.1 -8,-1.4 -2,-0.1 2,-0.4 -0.983 15.4-161.7-140.0 157.2 20.2 -5.5 7.0 27 27 A S E -C 17 0A 77 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.2 -0.995 7.4-165.3-138.0 132.8 19.2 -2.8 9.6 28 28 A L E -C 16 0A 52 -12,-2.8 -12,-2.5 -2,-0.4 2,-0.4 -0.982 8.4-149.9-121.6 125.1 16.1 -0.9 9.6 29 29 A N E -C 15 0A 35 -2,-0.5 20,-2.9 20,-0.3 2,-0.4 -0.794 14.8-164.6 -95.0 132.9 15.5 2.3 11.7 30 30 A E E +CD 14 48A 53 -16,-2.9 -16,-2.2 -2,-0.4 2,-0.3 -0.945 8.8 179.4-122.4 137.5 12.0 3.1 12.8 31 31 A Q E - D 0 47A 3 16,-2.5 16,-2.5 -2,-0.4 2,-0.2 -0.987 19.1-132.8-135.2 146.2 10.5 6.3 14.2 32 32 A L E + D 0 46A 76 -20,-0.5 2,-0.3 -2,-0.3 14,-0.2 -0.641 27.4 165.6 -96.8 156.8 7.1 7.3 15.4 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.5 -2,-0.2 2,-0.4 -0.941 33.2-113.2-155.5 170.9 5.1 10.4 14.5 34 34 A Y E -AD 5 44A 82 -29,-2.6 -29,-3.2 -2,-0.3 2,-0.4 -0.964 26.9-168.6-114.9 131.2 1.6 11.9 14.7 35 35 A I E -AD 4 43A 14 8,-2.2 8,-2.6 -2,-0.4 2,-0.8 -0.989 20.9-132.1-124.0 132.2 -0.3 12.7 11.5 36 36 A D + 0 0 72 -33,-1.8 -33,-0.4 -2,-0.4 4,-0.0 -0.731 29.6 169.8 -85.2 109.7 -3.5 14.7 11.3 37 37 A L - 0 0 109 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.079 63.0 -94.2-107.0 21.0 -5.9 12.7 9.2 38 38 A G S S+ 0 0 65 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.628 87.4 122.1 81.2 13.4 -8.9 14.9 10.1 39 39 A N S S- 0 0 104 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.253 85.2 -81.5 -90.8-170.6 -10.3 12.9 13.0 40 40 A E S S+ 0 0 185 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 0.878 115.2 14.7 -64.4 -33.1 -10.7 14.4 16.5 41 41 A Y S S- 0 0 190 -6,-0.1 -2,-0.3 -4,-0.0 -4,-0.3 -0.958 93.6 -93.3-134.0 152.6 -7.0 13.9 17.4 42 42 A P - 0 0 57 0, 0.0 2,-0.3 0, 0.0 -6,-0.3 -0.276 45.8-124.1 -53.2 148.7 -3.9 13.1 15.2 43 43 A V E -D 35 0A 51 -8,-2.6 -8,-2.2 -4,-0.0 2,-0.4 -0.751 16.7-108.5-104.3 150.5 -3.1 9.4 14.9 44 44 A L E -D 34 0A 99 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.593 39.3-177.7 -74.7 129.3 0.2 7.5 15.7 45 45 A V E -D 33 0A 42 -12,-2.5 -12,-1.9 -2,-0.4 2,-0.4 -0.988 20.0-136.3-131.3 136.4 2.1 6.3 12.6 46 46 A K E -D 32 0A 168 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.757 19.9-163.8 -95.6 135.8 5.4 4.3 12.3 47 47 A M E -D 31 0A 5 -16,-2.5 -16,-2.5 -2,-0.4 2,-0.5 -0.953 13.9-147.8-117.4 137.8 8.0 5.3 9.8 48 48 A T E -D 30 0A 38 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.0 -0.936 28.3-138.7-101.9 125.6 11.0 3.3 8.4 49 49 A L - 0 0 8 -20,-2.9 -20,-0.3 -2,-0.5 2,-0.2 -0.333 16.1-104.9 -82.4 161.5 13.8 5.7 7.7 50 50 A D > - 0 0 49 4,-0.1 3,-1.7 1,-0.1 -1,-0.1 -0.596 52.7 -76.7 -82.3 156.1 16.2 5.7 4.7 51 51 A E T 3 S+ 0 0 199 1,-0.2 -1,-0.1 -2,-0.2 -23,-0.0 -0.189 114.2 8.8 -55.8 132.4 19.7 4.4 5.0 52 52 A G T 3 S+ 0 0 78 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.525 95.7 128.3 76.4 9.8 22.2 6.9 6.6 53 53 A Q < - 0 0 54 -3,-1.7 -1,-0.2 1,-0.0 3,-0.1 -0.831 53.4-133.5 -98.9 131.2 19.5 9.3 7.6 54 54 A P - 0 0 96 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.203 39.2 -80.7 -66.6 164.8 19.2 10.5 11.3 55 55 A A - 0 0 24 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.435 53.6-103.6 -61.9 143.7 16.0 10.6 13.2 56 56 A Y - 0 0 24 -46,-0.1 -1,-0.1 -2,-0.1 3,-0.1 -0.496 38.0-118.3 -66.4 142.1 13.9 13.7 12.4 57 57 A A - 0 0 58 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.341 42.3 -78.6 -73.3 158.6 14.1 16.3 15.2 58 58 A P S S+ 0 0 66 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.291 88.1 76.9 -53.8 139.3 10.8 17.4 17.1 59 59 A G E S-B 6 0A 28 -53,-2.0 -53,-2.5 -3,-0.1 2,-0.4 -0.884 80.7 -46.4 149.6-174.7 8.7 19.8 15.0 60 60 A L E +B 5 0A 83 -2,-0.3 26,-2.0 -55,-0.2 2,-0.3 -0.721 52.1 169.2 -97.7 137.4 6.3 20.2 12.1 61 61 A Y E -BE 4 85A 25 -57,-2.7 -57,-2.6 -2,-0.4 2,-0.3 -0.910 21.7-147.8-139.1 159.5 6.8 18.6 8.7 62 62 A T E - E 0 84A 21 22,-2.6 22,-2.3 -2,-0.3 2,-0.5 -0.820 37.6 -89.4-124.1 171.7 5.0 17.9 5.5 63 63 A V E - E 0 83A 23 -61,-0.4 20,-0.2 -2,-0.3 2,-0.1 -0.733 34.5-133.2 -89.3 128.3 5.3 14.8 3.1 64 64 A H > - 0 0 90 18,-2.9 3,-2.1 -2,-0.5 18,-0.3 -0.447 20.4-119.4 -76.2 147.0 7.9 14.9 0.2 65 65 A L G > S+ 0 0 140 1,-0.3 3,-1.8 2,-0.2 -1,-0.1 0.787 108.0 71.8 -52.4 -32.2 6.8 13.8 -3.3 66 66 A S G 3 S+ 0 0 55 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.567 77.5 80.6 -66.8 -6.1 9.4 11.0 -3.3 67 67 A S G < S+ 0 0 0 -3,-2.1 12,-3.3 15,-0.2 13,-0.5 0.706 87.0 71.2 -66.7 -19.6 7.2 9.2 -0.7 68 68 A F E < +F 78 0B 71 -3,-1.8 2,-0.3 10,-0.2 10,-0.2 -0.658 52.5 165.4-108.0 153.7 5.0 8.0 -3.6 69 69 A K E -F 77 0B 106 8,-2.1 8,-2.7 -2,-0.2 2,-0.6 -0.972 42.4-100.9-150.9 160.0 5.3 5.4 -6.4 70 70 A V E -F 76 0B 99 -2,-0.3 6,-0.2 6,-0.2 2,-0.0 -0.824 46.1-140.1 -84.1 128.2 3.0 3.7 -8.9 71 71 A G > - 0 0 14 4,-2.8 3,-1.8 -2,-0.6 -1,-0.1 -0.123 28.6 -89.7 -76.8-179.7 2.4 0.1 -7.6 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.635 126.4 53.8 -72.0 -12.1 2.3 -3.2 -9.5 73 73 A F T 3 S- 0 0 179 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.327 119.7-107.6 -98.9 11.5 -1.5 -2.8 -10.1 74 74 A G S < S+ 0 0 58 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.497 83.0 116.3 78.4 2.9 -1.0 0.7 -11.7 75 75 A S S S- 0 0 72 1,-0.1 -4,-2.8 -5,-0.0 -1,-0.3 -0.622 74.3 -90.8 -98.5 161.5 -2.5 2.7 -8.7 76 76 A L E +F 70 0B 123 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.533 48.7 177.2 -74.8 142.0 -0.6 5.1 -6.4 77 77 A M E -F 69 0B 86 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.926 34.3-109.8-135.3 158.8 1.0 3.7 -3.3 78 78 A I E -F 68 0B 95 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.815 26.4-175.0 -86.0 130.4 3.2 5.0 -0.5 79 79 A D S S- 0 0 77 -12,-3.3 2,-0.3 -2,-0.5 -1,-0.2 0.915 71.6 -29.0 -82.1 -71.2 6.7 3.6 -0.9 80 80 A R S S- 0 0 78 -13,-0.5 2,-0.4 -14,-0.2 -1,-0.3 -0.975 70.6-106.4-142.4 140.7 8.1 5.1 2.4 81 81 A L - 0 0 29 -2,-0.3 2,-0.4 -3,-0.1 -33,-0.1 -0.508 41.0-175.3 -69.1 117.2 7.0 8.3 4.2 82 82 A R - 0 0 43 -2,-0.4 -18,-2.9 -18,-0.3 2,-0.3 -0.972 9.2-153.7-117.6 132.8 9.8 10.8 3.6 83 83 A L E -E 63 0A 15 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.763 16.2-168.9-115.1 153.7 9.4 14.3 5.2 84 84 A V E -E 62 0A 50 -22,-2.3 -22,-2.6 -2,-0.3 -2,-0.0 -0.980 40.9 -88.9-132.0 149.9 10.5 17.9 4.8 85 85 A P E E 61 0A 106 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.207 360.0 360.0 -60.9 138.9 10.3 20.8 7.3 86 86 A A 0 0 104 -26,-2.0 -26,-0.1 -82,-0.1 -24,-0.1 -0.202 360.0 360.0 -75.0 360.0 7.1 22.9 7.3