==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQF . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR H.ZHANG,M.M.SKINNER,W.S.SANDBERG,A.H.-J.WANG,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6508.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 51.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 211 0, 0.0 2,-0.4 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 139.2 -0.7 19.2 2.7 2 2 A I - 0 0 70 61,-0.1 2,-0.6 35,-0.0 61,-0.4 -0.707 360.0-141.5 -83.6 128.3 -0.4 16.4 5.3 3 3 A K - 0 0 118 33,-0.4 33,-2.0 -2,-0.4 2,-0.4 -0.864 22.8-178.3 -93.1 122.3 0.6 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.6 57,-2.8 -2,-0.6 2,-0.4 -0.955 6.2-164.4-120.7 139.5 3.0 15.5 10.5 5 5 A E E -AB 34 60A 65 29,-3.0 29,-2.6 -2,-0.4 2,-0.6 -0.992 13.6-157.1-126.8 132.1 4.4 16.2 14.0 6 6 A I E - B 0 59A 2 53,-2.5 53,-1.8 -2,-0.4 27,-0.1 -0.959 26.3-147.9 -97.7 118.9 7.3 14.7 15.8 7 7 A K > - 0 0 76 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.430 27.6-103.4 -79.2 162.4 6.6 15.2 19.5 8 8 A P G > S+ 0 0 106 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.811 123.4 56.5 -52.0 -33.3 9.5 15.7 22.1 9 9 A S G 3 S+ 0 0 109 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.483 101.9 56.3 -76.1 -6.1 8.9 12.1 23.2 10 10 A Q G < + 0 0 15 -3,-2.0 22,-0.2 1,-0.1 -1,-0.2 0.164 68.0 114.8-112.2 16.3 9.4 10.7 19.7 11 11 A A < + 0 0 42 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.477 66.4 66.0 -70.9 -2.0 12.9 12.2 19.0 12 12 A Q - 0 0 133 -3,-0.2 20,-0.5 42,-0.1 2,-0.3 -0.784 66.5-143.7-117.5 159.6 14.6 8.8 18.8 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.773 7.9-143.1-112.2 161.0 14.6 5.8 16.5 14 14 A T E -C 30 0A 97 16,-2.3 16,-2.9 -2,-0.3 2,-0.4 -0.886 16.3-135.6-115.9 161.7 14.8 2.1 17.1 15 15 A T E -C 29 0A 78 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.956 12.3-166.8-123.9 130.7 16.6 -0.4 14.9 16 16 A R E -C 28 0A 136 12,-2.5 12,-2.8 -2,-0.4 2,-0.3 -0.879 15.9-170.5-111.1 149.5 15.5 -3.9 13.7 17 17 A S E +C 27 0A 82 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.867 17.4 128.6-136.5 164.9 17.9 -6.3 12.1 18 18 A G E -C 26 0A 26 8,-1.4 8,-2.2 -2,-0.3 2,-0.4 -0.983 47.8 -77.6 174.6-168.7 18.1 -9.6 10.2 19 19 A V E -C 25 0A 98 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.982 37.6-126.4-126.2 127.3 19.4 -11.5 7.2 20 20 A S > - 0 0 43 4,-3.0 3,-1.9 -2,-0.4 6,-0.0 -0.045 39.2 -89.6 -61.1 166.8 17.9 -11.5 3.7 21 21 A R T 3 S+ 0 0 118 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.803 125.6 38.7 -47.7 -38.8 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 178 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.019 128.0 -83.3-110.7 30.2 20.4 -15.0 0.1 23 23 A G S < S+ 0 0 48 -3,-1.9 -2,-0.1 1,-0.2 0, 0.0 0.176 79.5 134.4 100.2 -17.5 22.6 -14.1 3.1 24 24 A K - 0 0 150 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.492 50.5-128.3 -70.6 130.8 22.9 -10.2 3.2 25 25 A P E -C 19 0A 95 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.431 28.4-172.2 -64.1 146.0 22.5 -8.4 6.6 26 26 A Y E -C 18 0A 93 -8,-2.2 -8,-1.4 -2,-0.1 2,-0.3 -0.969 12.9-162.8-135.1 158.9 20.0 -5.5 6.8 27 27 A S E -C 17 0A 79 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.993 4.7-164.7-139.9 134.0 19.1 -2.9 9.4 28 28 A L E -C 16 0A 51 -12,-2.8 -12,-2.5 -2,-0.3 2,-0.4 -0.986 7.4-152.7-121.4 126.2 16.0 -0.8 9.5 29 29 A N E -C 15 0A 40 -2,-0.4 20,-2.7 20,-0.3 2,-0.4 -0.834 16.3-168.3 -98.2 128.1 15.6 2.4 11.6 30 30 A E E -CD 14 48A 49 -16,-2.9 -16,-2.3 -2,-0.4 2,-0.3 -0.936 7.8-177.4-123.4 138.7 12.0 3.2 12.7 31 31 A Q E - D 0 47A 4 16,-2.8 16,-3.4 -2,-0.4 2,-0.3 -0.969 19.5-130.3-132.5 149.2 10.6 6.4 14.3 32 32 A L E + D 0 46A 75 -20,-0.5 2,-0.3 -2,-0.3 14,-0.2 -0.694 29.4 165.9-100.0 152.9 7.1 7.3 15.5 33 33 A C E - D 0 45A 0 12,-2.0 12,-2.4 -2,-0.3 2,-0.4 -0.934 33.3-112.7-152.1 171.1 5.1 10.4 14.6 34 34 A Y E -AD 5 44A 85 -29,-2.6 -29,-3.0 -2,-0.3 2,-0.4 -0.969 27.2-168.7-113.4 132.3 1.6 11.9 14.8 35 35 A I E -AD 4 43A 12 8,-2.2 8,-2.6 -2,-0.4 2,-0.8 -0.984 21.0-131.3-124.6 133.4 -0.3 12.6 11.6 36 36 A D + 0 0 71 -33,-2.0 -33,-0.4 -2,-0.4 4,-0.0 -0.723 29.4 169.8 -84.8 109.8 -3.5 14.6 11.4 37 37 A L - 0 0 110 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.110 62.2 -95.3-105.9 20.4 -5.9 12.6 9.3 38 38 A G S S+ 0 0 65 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.612 87.6 120.4 83.0 11.8 -8.9 14.8 10.1 39 39 A N S S- 0 0 107 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.263 86.3 -80.6 -91.9-169.1 -10.3 12.8 13.0 40 40 A E S S+ 0 0 187 1,-0.1 -2,-0.0 -2,-0.1 -4,-0.0 0.884 114.8 15.6 -68.4 -31.8 -10.7 14.3 16.6 41 41 A Y S S- 0 0 189 -6,-0.1 -2,-0.3 -4,-0.0 -4,-0.3 -0.946 92.5 -94.2-132.3 152.9 -7.0 13.8 17.4 42 42 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.266 44.9-126.9 -53.3 150.2 -3.9 13.0 15.3 43 43 A V E -D 35 0A 51 -8,-2.6 -8,-2.2 -4,-0.0 2,-0.3 -0.771 16.7-105.5-108.2 153.2 -3.0 9.3 15.0 44 44 A L E +D 34 0A 98 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.590 40.8 179.7 -76.3 130.1 0.2 7.4 15.7 45 45 A V E -D 33 0A 43 -12,-2.4 -12,-2.0 -2,-0.3 2,-0.4 -0.993 23.8-131.3-134.4 137.1 2.2 6.3 12.6 46 46 A K E -D 32 0A 163 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.770 20.4-163.2 -90.2 132.1 5.5 4.4 12.2 47 47 A V E -D 31 0A 3 -16,-3.4 -16,-2.8 -2,-0.4 2,-0.6 -0.934 8.7-149.4-112.3 134.2 8.0 5.9 9.8 48 48 A T E -D 30 0A 36 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.0 -0.934 22.6-136.8-104.1 123.5 11.0 3.8 8.4 49 49 A L - 0 0 7 -20,-2.7 -20,-0.3 -2,-0.6 2,-0.2 -0.270 15.6-111.0 -77.7 156.8 14.0 6.0 7.8 50 50 A D > - 0 0 48 1,-0.1 3,-1.9 4,-0.1 -1,-0.1 -0.580 52.4 -72.1 -83.2 158.0 16.2 5.8 4.6 51 51 A E T 3 S+ 0 0 200 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.0 -0.160 117.0 8.4 -52.7 134.8 19.9 4.6 4.9 52 52 A G T 3 S+ 0 0 79 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.531 95.8 130.1 72.6 9.0 22.3 7.0 6.6 53 53 A Q < - 0 0 56 -3,-1.9 -1,-0.2 -24,-0.0 3,-0.1 -0.817 51.0-135.7 -97.9 129.8 19.5 9.4 7.7 54 54 A P - 0 0 95 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.206 40.2 -77.0 -63.8 167.3 19.3 10.6 11.4 55 55 A A - 0 0 24 -44,-0.1 2,-0.2 1,-0.1 -44,-0.1 -0.417 53.3-104.7 -65.7 140.7 16.1 10.8 13.4 56 56 A Y - 0 0 21 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.522 38.6-121.2 -60.6 135.7 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.337 41.4 -77.6 -73.1 157.9 14.0 16.4 15.2 58 58 A P S S+ 0 0 66 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.304 88.2 76.9 -53.3 139.5 10.8 17.5 17.1 59 59 A G E S-B 6 0A 28 -53,-1.8 -53,-2.5 -3,-0.1 2,-0.4 -0.911 81.0 -46.0 149.8-174.4 8.7 19.8 15.1 60 60 A L E +B 5 0A 84 -2,-0.3 26,-2.2 -55,-0.2 2,-0.3 -0.750 52.4 169.3 -96.6 138.8 6.2 20.2 12.2 61 61 A Y E -BE 4 85A 25 -57,-2.8 -57,-2.6 -2,-0.4 2,-0.3 -0.903 20.6-149.8-140.4 160.2 6.8 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.8 22,-2.4 -2,-0.3 2,-0.4 -0.794 36.8 -88.6-125.4 176.8 4.9 17.7 5.6 63 63 A V E - E 0 83A 22 -61,-0.4 20,-0.2 -2,-0.3 2,-0.2 -0.742 34.8-132.5 -93.8 130.8 5.3 14.8 3.2 64 64 A H > - 0 0 90 18,-3.0 3,-2.0 -2,-0.4 18,-0.4 -0.517 20.1-119.7 -79.8 149.2 7.8 14.9 0.3 65 65 A L G > S+ 0 0 141 1,-0.3 3,-1.7 -2,-0.2 -1,-0.1 0.773 108.5 72.4 -55.4 -31.8 6.7 13.9 -3.2 66 66 A S G 3 S+ 0 0 53 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.552 77.4 80.1 -64.2 -6.9 9.4 11.0 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.0 12,-3.4 15,-0.2 13,-0.6 0.701 86.6 72.0 -66.8 -18.4 7.1 9.2 -0.7 68 68 A F E < +F 78 0B 71 -3,-1.7 2,-0.3 10,-0.2 10,-0.2 -0.637 51.6 164.8-113.2 150.1 4.9 8.0 -3.6 69 69 A K E -F 77 0B 105 8,-2.1 8,-2.7 -2,-0.2 2,-0.5 -0.973 42.7-100.9-149.6 158.1 5.3 5.4 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 2,-0.0 -0.793 45.7-141.6 -82.6 127.6 3.0 3.7 -8.9 71 71 A G > - 0 0 15 4,-2.7 3,-1.8 -2,-0.5 -1,-0.0 -0.163 29.0 -87.9 -79.5 179.1 2.4 0.1 -7.7 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.603 126.0 52.9 -69.3 -8.6 2.2 -3.2 -9.6 73 73 A F T 3 S- 0 0 179 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.303 119.7-106.1-106.0 10.2 -1.6 -2.8 -10.1 74 74 A G S < S+ 0 0 59 -3,-1.8 2,-0.2 1,-0.3 -2,-0.1 0.451 83.9 115.5 83.6 2.5 -1.2 0.7 -11.7 75 75 A S S S- 0 0 72 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.610 74.0 -92.4 -99.1 159.9 -2.6 2.7 -8.6 76 76 A L E +F 70 0B 122 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.505 47.0 178.7 -73.6 142.8 -0.6 5.1 -6.4 77 77 A M E -F 69 0B 85 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.937 33.0-111.0-135.9 160.4 1.1 3.7 -3.3 78 78 A I E -F 68 0B 95 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.829 26.8-176.2 -91.0 130.9 3.3 5.0 -0.5 79 79 A D S S- 0 0 77 -12,-3.4 2,-0.3 -2,-0.5 -1,-0.2 0.926 72.2 -24.6 -84.5 -68.9 6.8 3.6 -0.8 80 80 A R S S- 0 0 80 -13,-0.6 2,-0.6 -14,-0.2 -1,-0.3 -0.979 70.5-111.1-141.4 136.4 8.2 5.1 2.4 81 81 A L - 0 0 23 -2,-0.3 2,-0.5 -3,-0.1 -33,-0.1 -0.580 38.5-170.9 -72.3 112.8 6.9 8.3 4.1 82 82 A R - 0 0 43 -2,-0.6 -18,-3.0 -18,-0.4 2,-0.3 -0.925 8.7-151.1-107.5 127.1 9.7 10.8 3.5 83 83 A L E -E 63 0A 12 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.760 15.7-172.7-109.0 150.2 9.4 14.1 5.5 84 84 A V E -E 62 0A 50 -22,-2.4 -22,-2.8 -2,-0.3 -2,-0.0 -0.991 40.0 -88.6-134.7 148.2 10.5 17.7 5.0 85 85 A P E E 61 0A 104 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.186 360.0 360.0 -60.1 138.0 10.2 20.7 7.4 86 86 A A 0 0 101 -26,-2.2 -26,-0.1 -82,-0.1 -83,-0.0 -0.305 360.0 360.0 -74.0 360.0 7.0 22.7 7.2