==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQG . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6521.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 51.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 210 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 134.7 -0.8 19.1 2.7 2 2 A I - 0 0 66 61,-0.1 2,-0.5 35,-0.0 61,-0.4 -0.765 360.0-141.2 -81.1 126.0 -0.6 16.4 5.3 3 3 A K - 0 0 118 -2,-0.5 33,-2.1 33,-0.4 2,-0.4 -0.820 23.2-178.7 -90.3 124.6 0.5 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.4 57,-2.9 -2,-0.5 2,-0.4 -0.968 6.2-164.1-124.1 139.7 2.9 15.4 10.5 5 5 A E E -AB 34 60A 59 29,-3.1 29,-2.5 -2,-0.4 2,-0.6 -0.989 14.6-156.2-128.6 132.6 4.3 16.1 14.0 6 6 A I E - B 0 59A 1 53,-2.3 53,-1.9 -2,-0.4 27,-0.1 -0.959 26.5-148.6 -98.6 116.4 7.2 14.6 15.8 7 7 A K > - 0 0 79 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.437 27.5-103.5 -77.8 161.3 6.5 15.1 19.5 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.809 123.5 56.2 -51.5 -33.8 9.3 15.6 22.1 9 9 A S G 3 S+ 0 0 110 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.522 102.3 57.1 -75.4 -7.4 8.8 12.0 23.3 10 10 A Q G < + 0 0 14 -3,-2.0 -1,-0.2 1,-0.1 22,-0.2 0.178 68.9 113.8-111.1 16.8 9.3 10.7 19.7 11 11 A A < + 0 0 42 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.445 66.4 64.7 -73.0 -0.7 12.8 12.1 19.1 12 12 A Q - 0 0 136 -3,-0.2 20,-0.4 42,-0.1 2,-0.3 -0.803 66.9-141.4-119.3 163.7 14.6 8.7 18.9 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.791 6.9-145.8-115.8 160.0 14.6 5.7 16.7 14 14 A T E -C 30 0A 99 16,-2.3 16,-2.8 -2,-0.3 2,-0.4 -0.864 17.5-134.6-115.1 162.1 14.8 2.0 17.4 15 15 A T E -C 29 0A 79 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.963 13.3-167.4-124.9 130.9 16.5 -0.5 15.1 16 16 A R E -C 28 0A 135 12,-2.5 12,-2.9 -2,-0.4 2,-0.3 -0.867 16.2-171.1-111.2 152.3 15.4 -3.9 13.9 17 17 A S E +C 27 0A 80 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.885 17.2 128.2-141.0 164.7 17.8 -6.4 12.2 18 18 A G E -C 26 0A 26 8,-1.5 8,-2.2 -2,-0.3 2,-0.4 -0.983 47.2 -75.8 174.9-167.6 18.0 -9.6 10.3 19 19 A V E -C 25 0A 99 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.985 37.1-127.1-126.9 129.6 19.3 -11.5 7.3 20 20 A S > - 0 0 43 4,-3.0 3,-1.9 -2,-0.4 6,-0.0 -0.079 38.9 -90.1 -63.5 168.0 17.9 -11.4 3.7 21 21 A R T 3 S+ 0 0 117 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.817 125.4 39.0 -51.1 -39.6 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 184 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.059 128.1 -84.6-109.7 32.9 20.3 -14.9 0.1 23 23 A G S < S+ 0 0 49 -3,-1.9 -2,-0.1 1,-0.2 0, 0.0 0.184 78.7 135.7 97.9 -14.7 22.5 -14.1 3.1 24 24 A K - 0 0 149 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.497 49.9-127.5 -71.8 130.2 22.9 -10.2 3.2 25 25 A P E -C 19 0A 97 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.403 28.8-172.7 -64.2 148.2 22.5 -8.4 6.6 26 26 A Y E -C 18 0A 88 -8,-2.2 -8,-1.5 -2,-0.1 2,-0.4 -0.986 14.2-163.5-140.6 157.2 20.0 -5.5 7.0 27 27 A S E -C 17 0A 79 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.996 5.4-164.0-140.5 134.7 19.1 -2.9 9.5 28 28 A L E -C 16 0A 54 -12,-2.9 -12,-2.5 -2,-0.4 2,-0.4 -0.985 8.1-150.7-120.2 126.6 16.0 -0.8 9.6 29 29 A N E -C 15 0A 38 -2,-0.4 20,-2.6 20,-0.3 2,-0.4 -0.810 16.6-166.6 -97.1 127.9 15.5 2.3 11.8 30 30 A E E +CD 14 48A 51 -16,-2.8 -16,-2.3 -2,-0.4 2,-0.3 -0.940 9.4 179.3-120.4 138.5 12.0 3.1 12.9 31 31 A Q E - D 0 47A 3 16,-2.2 16,-3.4 -2,-0.4 2,-0.2 -0.981 20.6-130.6-132.6 148.6 10.6 6.3 14.4 32 32 A L E + D 0 46A 78 -20,-0.4 2,-0.3 -2,-0.3 14,-0.2 -0.637 29.3 164.6 -99.1 155.4 7.0 7.2 15.6 33 33 A C E - D 0 45A 0 12,-1.9 12,-2.4 -2,-0.2 2,-0.4 -0.931 34.1-110.7-152.7 173.4 5.0 10.3 14.7 34 34 A Y E -AD 5 44A 83 -29,-2.5 -29,-3.1 -2,-0.3 2,-0.4 -0.981 26.3-167.2-113.9 132.9 1.5 11.8 14.7 35 35 A V E -AD 4 43A 10 8,-2.2 8,-2.7 -2,-0.4 2,-0.8 -0.967 19.5-132.5-123.0 131.8 -0.4 12.5 11.4 36 36 A D + 0 0 68 -33,-2.1 -33,-0.4 -2,-0.4 -2,-0.0 -0.752 28.8 170.1 -87.9 111.0 -3.5 14.5 11.3 37 37 A L - 0 0 111 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.076 61.9 -97.1-105.9 20.5 -6.1 12.7 9.3 38 38 A G S S+ 0 0 66 1,-0.2 -2,-0.1 2,-0.0 2,-0.1 0.625 85.4 124.3 78.1 13.0 -8.9 15.1 10.2 39 39 A N S S- 0 0 106 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.245 85.0 -81.7 -87.0-172.2 -10.4 13.0 13.0 40 40 A E S S+ 0 0 187 1,-0.1 -2,-0.0 -3,-0.1 -1,-0.0 0.864 115.7 16.2 -63.5 -31.6 -10.8 14.5 16.6 41 41 A Y S S- 0 0 189 -4,-0.0 -2,-0.3 1,-0.0 -4,-0.3 -0.956 92.3 -95.8-133.1 153.0 -7.1 13.8 17.4 42 42 A P - 0 0 56 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.260 43.8-124.9 -53.6 151.0 -4.0 13.0 15.3 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.2 -4,-0.0 2,-0.3 -0.791 17.5-106.3-108.0 152.3 -3.1 9.3 14.9 44 44 A L E -D 34 0A 99 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.590 40.1-178.4 -77.0 130.8 0.1 7.4 15.7 45 45 A V E -D 33 0A 43 -12,-2.4 -12,-1.9 -2,-0.3 2,-0.4 -0.986 22.9-130.5-133.0 135.3 2.1 6.3 12.6 46 46 A K E -D 32 0A 165 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.766 20.4-160.6 -87.2 131.7 5.4 4.3 12.2 47 47 A L E -D 31 0A 3 -16,-3.4 -16,-2.2 -2,-0.4 2,-0.5 -0.883 7.4-153.4-106.0 139.1 8.1 5.8 10.0 48 48 A T E -D 30 0A 38 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.0 -0.976 23.7-138.9-108.9 121.6 11.0 3.7 8.5 49 49 A L - 0 0 9 -20,-2.6 -20,-0.3 -2,-0.5 2,-0.2 -0.290 15.3-109.8 -77.0 156.9 14.0 5.9 7.9 50 50 A D > - 0 0 47 1,-0.1 3,-1.8 4,-0.1 -1,-0.1 -0.552 51.5 -73.2 -83.1 160.8 16.2 5.8 4.8 51 51 A E T 3 S+ 0 0 201 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.0 -0.168 117.3 8.4 -55.7 133.4 19.9 4.5 5.0 52 52 A G T 3 S+ 0 0 82 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.533 96.3 129.8 74.0 9.5 22.2 7.0 6.7 53 53 A Q < - 0 0 58 -3,-1.8 -1,-0.2 -24,-0.0 3,-0.1 -0.803 51.8-134.0 -99.2 132.7 19.5 9.4 7.8 54 54 A P - 0 0 97 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.242 39.6 -81.0 -66.8 164.0 19.2 10.6 11.5 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.414 53.8-103.1 -62.4 143.2 15.9 10.7 13.4 56 56 A Y - 0 0 22 -46,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.546 38.7-119.1 -64.7 137.4 13.8 13.7 12.6 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.330 42.0 -78.9 -71.0 155.8 13.9 16.3 15.3 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.296 87.9 78.0 -53.0 138.7 10.7 17.4 17.2 59 59 A G E S-B 6 0A 29 -53,-1.9 -53,-2.3 -3,-0.1 2,-0.4 -0.909 80.6 -46.5 151.4-173.0 8.6 19.8 15.2 60 60 A L E +B 5 0A 84 -2,-0.3 26,-2.1 -55,-0.2 2,-0.3 -0.745 52.5 169.9 -98.8 138.8 6.1 20.2 12.3 61 61 A Y E -BE 4 85A 25 -57,-2.9 -57,-2.4 -2,-0.4 2,-0.3 -0.907 21.1-150.1-140.1 160.6 6.6 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.7 22,-2.3 -2,-0.3 2,-0.4 -0.786 37.9 -87.6-126.3 177.3 4.8 17.8 5.7 63 63 A V E - E 0 83A 24 -61,-0.4 20,-0.2 -2,-0.3 2,-0.2 -0.739 34.0-133.0 -95.2 130.1 5.3 14.9 3.2 64 64 A H > - 0 0 88 18,-3.0 3,-2.0 -2,-0.4 18,-0.4 -0.512 20.0-120.7 -78.5 146.0 7.9 14.9 0.4 65 65 A L G > S+ 0 0 141 1,-0.3 3,-1.7 -2,-0.2 -1,-0.1 0.784 107.9 72.2 -53.1 -31.8 6.8 13.9 -3.2 66 66 A S G 3 S+ 0 0 55 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.535 77.5 80.2 -64.6 -6.1 9.4 11.1 -3.1 67 67 A S G < S+ 0 0 0 -3,-2.0 12,-3.5 15,-0.2 13,-0.6 0.680 86.5 73.6 -68.1 -21.9 7.2 9.2 -0.6 68 68 A F E < +F 78 0B 73 -3,-1.7 2,-0.3 10,-0.2 10,-0.2 -0.672 51.1 163.9-106.3 152.3 5.0 8.0 -3.6 69 69 A K E -F 77 0B 107 8,-2.0 8,-2.7 -2,-0.3 2,-0.6 -0.971 43.3-101.3-151.1 158.0 5.4 5.5 -6.4 70 70 A V E -F 76 0B 97 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.806 45.7-140.0 -85.4 127.5 3.1 3.7 -8.9 71 71 A G > - 0 0 13 4,-2.7 3,-1.9 -2,-0.6 -1,-0.0 -0.126 28.3 -88.9 -78.7 178.3 2.5 0.2 -7.6 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.628 125.7 51.9 -71.7 -8.8 2.3 -3.1 -9.5 73 73 A F T 3 S- 0 0 178 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.294 119.8-105.0-105.2 10.9 -1.5 -2.8 -10.1 74 74 A G S < S+ 0 0 58 -3,-1.9 2,-0.2 1,-0.3 -2,-0.1 0.430 83.4 116.7 87.1 -2.9 -1.1 0.8 -11.6 75 75 A S S S- 0 0 71 1,-0.1 -4,-2.7 -5,-0.0 -1,-0.3 -0.597 73.3 -95.6 -96.0 159.6 -2.5 2.7 -8.6 76 76 A L E +F 70 0B 122 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.525 47.3 178.3 -74.9 142.1 -0.5 5.2 -6.5 77 77 A M E -F 69 0B 84 -8,-2.7 -8,-2.0 -2,-0.2 2,-0.5 -0.941 34.0-108.0-135.3 162.6 1.0 3.9 -3.3 78 78 A I E -F 68 0B 94 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.803 27.0-175.9 -88.1 127.6 3.2 5.1 -0.5 79 79 A D S S- 0 0 77 -12,-3.5 2,-0.3 -2,-0.5 -1,-0.2 0.921 73.1 -25.5 -81.2 -68.3 6.7 3.7 -0.8 80 80 A R S S- 0 0 78 -13,-0.6 2,-0.5 -14,-0.2 -1,-0.3 -0.971 71.0-110.0-142.7 135.9 8.1 5.2 2.5 81 81 A L - 0 0 30 -2,-0.3 2,-0.4 -3,-0.1 -33,-0.2 -0.560 40.4-172.7 -70.1 113.8 6.8 8.3 4.2 82 82 A R - 0 0 44 -2,-0.5 -18,-3.0 -18,-0.4 2,-0.3 -0.941 7.7-151.3-111.9 132.3 9.6 10.9 3.7 83 83 A L E -E 63 0A 13 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.736 16.2-171.3-114.5 152.8 9.3 14.2 5.5 84 84 A V E -E 62 0A 50 -22,-2.3 -22,-2.7 -2,-0.3 -2,-0.0 -0.989 42.3 -88.6-133.0 147.4 10.4 17.8 5.0 85 85 A P E E 61 0A 105 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.201 360.0 360.0 -58.4 136.8 10.2 20.8 7.5 86 86 A A 0 0 99 -26,-2.1 -26,-0.1 -82,-0.1 -83,-0.0 -0.335 360.0 360.0 -71.0 360.0 6.9 22.7 7.4