==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQH . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR M.M.SKINNER,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6530.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 210 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 134.9 -0.8 19.2 2.7 2 2 A I - 0 0 68 61,-0.1 2,-0.5 35,-0.0 61,-0.4 -0.764 360.0-140.9 -84.0 126.9 -0.5 16.5 5.3 3 3 A K - 0 0 116 -2,-0.5 33,-2.1 33,-0.4 2,-0.4 -0.818 23.5-177.9 -88.9 120.9 0.5 17.9 8.7 4 4 A V E -AB 35 61A 0 57,-2.5 57,-2.7 -2,-0.5 2,-0.4 -0.972 6.0-163.3-120.4 139.0 2.9 15.5 10.5 5 5 A E E -AB 34 60A 60 29,-3.2 29,-2.5 -2,-0.4 2,-0.6 -0.988 14.1-157.6-125.9 132.1 4.3 16.2 14.1 6 6 A I E - B 0 59A 1 53,-2.4 53,-2.0 -2,-0.4 27,-0.1 -0.961 26.3-149.0 -99.1 116.1 7.2 14.6 15.8 7 7 A K > - 0 0 80 -2,-0.6 3,-2.2 51,-0.2 4,-0.1 -0.432 28.0-102.7 -78.4 161.4 6.5 15.1 19.6 8 8 A P G > S+ 0 0 105 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.809 123.6 55.8 -51.6 -32.9 9.4 15.6 22.1 9 9 A S G 3 S+ 0 0 110 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.502 102.1 57.4 -77.9 -4.7 8.9 11.9 23.2 10 10 A Q G < + 0 0 14 -3,-2.2 22,-0.2 1,-0.1 -1,-0.2 0.140 68.6 113.9-112.2 15.8 9.4 10.6 19.6 11 11 A A < + 0 0 43 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.410 66.8 63.8 -73.4 1.9 12.8 12.1 19.1 12 12 A Q - 0 0 136 -3,-0.2 20,-0.5 42,-0.1 2,-0.3 -0.796 67.4-140.0-122.7 163.4 14.6 8.8 18.8 13 13 A F - 0 0 56 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.822 7.8-145.3-115.8 158.8 14.6 5.7 16.6 14 14 A T E -C 30 0A 98 16,-2.2 16,-2.8 -2,-0.3 2,-0.4 -0.853 18.0-134.7-113.3 163.0 14.8 2.0 17.4 15 15 A T E -C 29 0A 78 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.967 13.6-167.7-124.9 129.3 16.5 -0.5 15.1 16 16 A R E -C 28 0A 134 12,-2.7 12,-2.8 -2,-0.4 2,-0.3 -0.858 16.0-169.9-109.1 153.9 15.4 -3.9 13.9 17 17 A S E +C 27 0A 80 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.883 18.3 126.2-141.4 167.1 17.8 -6.4 12.2 18 18 A G E -C 26 0A 26 8,-1.6 8,-2.2 -2,-0.3 2,-0.4 -0.982 47.8 -75.8 173.2-165.2 18.1 -9.6 10.4 19 19 A V E -C 25 0A 98 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.987 37.0-124.3-129.7 132.7 19.3 -11.4 7.3 20 20 A S > - 0 0 43 4,-3.0 3,-2.0 -2,-0.4 6,-0.0 -0.152 39.8 -91.1 -66.4 166.0 17.9 -11.4 3.7 21 21 A R T 3 S+ 0 0 117 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.796 125.9 40.9 -50.6 -35.6 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 182 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.011 127.4 -87.2-110.0 31.6 20.4 -14.9 0.2 23 23 A G S < S+ 0 0 49 -3,-2.0 -2,-0.1 1,-0.2 0, 0.0 0.192 78.0 135.1 98.0 -16.4 22.5 -14.1 3.2 24 24 A K - 0 0 152 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.469 51.4-125.5 -70.4 131.4 23.0 -10.2 3.3 25 25 A P E -C 19 0A 100 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.424 29.8-171.6 -64.9 149.3 22.6 -8.4 6.7 26 26 A Y E -C 18 0A 87 -8,-2.2 -8,-1.6 -2,-0.1 2,-0.4 -0.988 14.6-162.1-141.2 158.3 20.1 -5.5 7.0 27 27 A S E -C 17 0A 76 -2,-0.3 2,-0.5 -10,-0.2 -10,-0.2 -0.999 5.9-165.1-137.7 134.8 19.2 -2.9 9.6 28 28 A L E -C 16 0A 53 -12,-2.8 -12,-2.7 -2,-0.4 2,-0.4 -0.984 8.0-151.3-124.6 124.0 16.0 -0.9 9.6 29 29 A N E -C 15 0A 38 -2,-0.5 20,-2.8 20,-0.3 2,-0.4 -0.810 14.9-165.2 -94.1 130.1 15.5 2.3 11.7 30 30 A E E +CD 14 48A 54 -16,-2.8 -16,-2.2 -2,-0.4 2,-0.3 -0.942 8.9 179.8-121.8 135.8 12.0 3.1 12.9 31 31 A Q E - D 0 47A 3 16,-2.4 16,-2.8 -2,-0.4 2,-0.2 -0.978 19.4-132.3-132.2 147.2 10.5 6.3 14.3 32 32 A L E + D 0 46A 76 -20,-0.5 2,-0.3 -2,-0.3 14,-0.2 -0.639 27.9 164.4 -97.5 157.1 7.0 7.2 15.5 33 33 A C E - D 0 45A 0 12,-2.0 12,-2.5 -2,-0.2 2,-0.4 -0.939 34.5-111.5-155.5 172.0 5.0 10.3 14.6 34 34 A Y E -AD 5 44A 82 -29,-2.5 -29,-3.2 -2,-0.3 2,-0.4 -0.976 27.1-167.0-115.0 131.0 1.5 11.8 14.7 35 35 A V E -AD 4 43A 11 8,-2.3 8,-2.7 -2,-0.4 2,-0.9 -0.972 19.4-132.0-121.5 132.1 -0.3 12.5 11.4 36 36 A D + 0 0 67 -33,-2.1 -33,-0.4 -2,-0.4 -2,-0.0 -0.739 29.4 169.7 -88.6 110.6 -3.4 14.6 11.3 37 37 A L - 0 0 109 -2,-0.9 -1,-0.1 4,-0.3 3,-0.1 0.108 62.1 -97.2-106.5 20.6 -6.0 12.7 9.3 38 38 A G S S+ 0 0 65 1,-0.2 -2,-0.1 2,-0.0 2,-0.1 0.647 85.0 125.3 77.9 12.2 -8.9 15.1 10.2 39 39 A N S S- 0 0 106 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.242 84.7 -81.2 -86.8-170.8 -10.3 13.0 13.0 40 40 A E S S+ 0 0 188 1,-0.1 -1,-0.0 -3,-0.1 -2,-0.0 0.873 116.2 14.4 -64.6 -30.6 -10.8 14.4 16.6 41 41 A Y S S- 0 0 193 -4,-0.0 -2,-0.3 0, 0.0 -4,-0.3 -0.965 93.1 -94.5-134.4 153.9 -7.1 13.8 17.4 42 42 A P - 0 0 57 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.271 44.9-124.2 -54.8 151.7 -4.0 13.0 15.2 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.3 -4,-0.0 2,-0.3 -0.767 17.5-107.0-107.6 151.0 -3.1 9.3 14.9 44 44 A L E -D 34 0A 100 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.589 39.4-177.1 -76.6 128.7 0.1 7.4 15.7 45 45 A V E -D 33 0A 44 -12,-2.5 -12,-2.0 -2,-0.3 2,-0.4 -0.989 20.1-136.9-129.7 136.5 2.1 6.3 12.7 46 46 A K E -D 32 0A 169 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.787 19.5-164.6 -95.2 136.6 5.3 4.3 12.3 47 47 A M E -D 31 0A 3 -16,-2.8 -16,-2.4 -2,-0.4 2,-0.5 -0.939 13.2-148.4-116.8 137.6 8.0 5.4 9.8 48 48 A T E -D 30 0A 37 -2,-0.4 -18,-0.2 -18,-0.2 2,-0.1 -0.950 27.5-138.0-101.8 126.0 11.0 3.4 8.5 49 49 A L - 0 0 10 -20,-2.8 -20,-0.3 -2,-0.5 2,-0.2 -0.336 16.3-106.1 -78.9 160.5 13.8 5.8 7.8 50 50 A D > - 0 0 48 1,-0.1 3,-1.7 4,-0.1 -1,-0.1 -0.529 52.5 -74.0 -81.6 159.9 16.1 5.7 4.8 51 51 A E T 3 S+ 0 0 203 1,-0.3 -1,-0.1 -2,-0.2 -23,-0.0 -0.196 116.0 8.5 -57.3 133.9 19.8 4.5 5.0 52 52 A G T 3 S+ 0 0 80 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.529 96.1 130.0 74.4 10.3 22.2 6.9 6.7 53 53 A Q < - 0 0 54 -3,-1.7 -1,-0.2 -24,-0.0 3,-0.1 -0.814 51.6-134.9 -99.0 130.5 19.4 9.3 7.8 54 54 A P - 0 0 97 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.261 39.2 -81.2 -67.7 162.8 19.2 10.5 11.5 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.418 53.8-104.5 -59.6 141.2 15.9 10.6 13.4 56 56 A Y - 0 0 23 -46,-0.1 -1,-0.1 -44,-0.1 3,-0.1 -0.518 38.2-118.0 -65.1 140.2 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.361 42.9 -77.2 -72.3 158.9 14.0 16.3 15.3 58 58 A P S S+ 0 0 68 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.291 88.1 77.5 -53.3 139.9 10.7 17.4 17.2 59 59 A G E S-B 6 0A 28 -53,-2.0 -53,-2.4 -3,-0.1 2,-0.4 -0.917 80.1 -46.8 149.6-174.5 8.6 19.8 15.2 60 60 A L E +B 5 0A 85 -2,-0.3 26,-1.9 -55,-0.2 2,-0.3 -0.739 52.3 168.9 -99.1 138.8 6.1 20.2 12.3 61 61 A Y E -BE 4 85A 26 -57,-2.7 -57,-2.5 -2,-0.4 2,-0.3 -0.910 21.8-148.4-139.9 162.2 6.6 18.6 8.9 62 62 A T E - E 0 84A 20 22,-2.6 22,-2.2 -2,-0.3 2,-0.5 -0.809 38.2 -88.1-127.6 174.5 4.8 17.9 5.7 63 63 A V E - E 0 83A 24 -61,-0.4 20,-0.2 -2,-0.3 2,-0.1 -0.735 34.8-133.4 -91.5 129.9 5.2 14.9 3.2 64 64 A H > - 0 0 88 18,-2.9 3,-1.9 -2,-0.5 18,-0.3 -0.466 20.3-119.8 -79.1 145.6 7.8 15.0 0.4 65 65 A L G > S+ 0 0 140 1,-0.3 3,-1.7 2,-0.2 -1,-0.1 0.760 108.1 72.1 -52.9 -32.3 6.8 13.9 -3.1 66 66 A S G 3 S+ 0 0 55 1,-0.3 -1,-0.3 12,-0.0 14,-0.2 0.516 77.7 80.5 -64.0 -8.2 9.4 11.1 -3.1 67 67 A S G < S+ 0 0 0 -3,-1.9 12,-3.6 15,-0.2 13,-0.6 0.703 86.9 73.0 -67.6 -19.5 7.2 9.2 -0.6 68 68 A F E < +F 78 0B 75 -3,-1.7 2,-0.3 10,-0.3 10,-0.2 -0.632 51.7 163.1-108.2 153.7 5.0 8.1 -3.5 69 69 A K E -F 77 0B 105 8,-2.1 8,-2.7 -2,-0.2 2,-0.6 -0.972 43.2 -99.7-151.9 161.1 5.3 5.5 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 5,-0.0 -0.836 45.9-140.4 -86.8 126.5 3.1 3.7 -8.9 71 71 A G > - 0 0 13 4,-2.6 3,-1.7 -2,-0.6 -1,-0.0 -0.103 29.0 -89.1 -74.6 176.7 2.5 0.2 -7.6 72 72 A Q T 3 S+ 0 0 176 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.647 126.1 52.4 -69.2 -13.0 2.3 -3.1 -9.4 73 73 A F T 3 S- 0 0 177 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.318 119.8-105.8-101.9 13.2 -1.4 -2.7 -10.1 74 74 A G S < S+ 0 0 58 -3,-1.7 2,-0.2 1,-0.3 -2,-0.1 0.463 83.1 117.3 82.1 2.5 -1.0 0.8 -11.6 75 75 A S S S- 0 0 69 1,-0.1 -4,-2.6 -5,-0.0 -1,-0.3 -0.603 73.0 -94.5 -99.2 161.3 -2.5 2.7 -8.6 76 76 A L E +F 70 0B 124 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.534 47.9 176.3 -75.9 142.9 -0.6 5.2 -6.5 77 77 A M E -F 69 0B 84 -8,-2.7 -8,-2.1 -2,-0.2 2,-0.5 -0.946 35.3-107.3-136.8 161.9 1.0 3.9 -3.3 78 78 A I E -F 68 0B 93 -2,-0.3 -10,-0.3 -10,-0.2 3,-0.1 -0.789 26.5-174.4 -86.6 127.7 3.2 5.2 -0.5 79 79 A D S S- 0 0 77 -12,-3.6 2,-0.3 -2,-0.5 -1,-0.2 0.929 72.5 -26.7 -80.5 -69.4 6.7 3.8 -0.8 80 80 A R S S- 0 0 81 -13,-0.6 2,-0.5 -14,-0.2 -1,-0.3 -0.968 71.1-106.7-143.0 139.3 8.1 5.2 2.5 81 81 A L - 0 0 32 -2,-0.3 2,-0.4 -3,-0.1 -33,-0.1 -0.518 42.7-175.1 -69.5 114.5 6.8 8.3 4.3 82 82 A R - 0 0 42 -2,-0.5 -18,-2.9 -18,-0.3 2,-0.3 -0.965 8.4-152.8-117.3 130.3 9.6 10.9 3.7 83 83 A L E -E 63 0A 14 -2,-0.4 -20,-0.2 -20,-0.2 -22,-0.0 -0.741 16.8-170.4-112.3 153.9 9.3 14.3 5.4 84 84 A V E -E 62 0A 50 -22,-2.2 -22,-2.6 -2,-0.3 -2,-0.0 -0.987 42.0 -89.1-133.3 148.7 10.4 17.9 5.0 85 85 A P E E 61 0A 107 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.196 360.0 360.0 -58.9 137.3 10.2 20.8 7.5 86 86 A A 0 0 99 -26,-1.9 -26,-0.1 -82,-0.1 -24,-0.0 -0.319 360.0 360.0 -73.1 360.0 7.0 22.8 7.3