==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 14-AUG-96 1VQJ . COMPND 2 MOLECULE: GENE V PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE F1; . AUTHOR H.ZHANG,M.M.SKINNER,W.S.SANDBERG,A.H.-J.WANG,T.C.TERWILLIGER . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6496.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 210 0, 0.0 2,-0.5 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 136.2 -0.7 19.1 2.7 2 2 A I - 0 0 67 61,-0.1 2,-0.5 33,-0.0 61,-0.4 -0.731 360.0-141.3 -83.6 128.5 -0.4 16.4 5.3 3 3 A K - 0 0 117 -2,-0.5 33,-1.9 33,-0.4 2,-0.4 -0.838 23.0-178.6 -92.6 118.5 0.6 17.8 8.7 4 4 A V E -AB 35 61A 0 57,-2.6 57,-2.9 -2,-0.5 2,-0.4 -0.962 6.2-164.5-118.3 140.1 3.0 15.5 10.5 5 5 A E E -AB 34 60A 61 29,-3.0 29,-2.5 -2,-0.4 2,-0.6 -0.990 13.9-156.6-127.1 132.2 4.4 16.2 14.0 6 6 A I E - B 0 59A 1 53,-2.4 53,-1.9 -2,-0.4 27,-0.1 -0.953 26.1-147.9 -98.2 117.0 7.3 14.6 15.8 7 7 A K > - 0 0 76 -2,-0.6 3,-2.0 51,-0.2 4,-0.1 -0.429 27.5-103.6 -77.9 161.9 6.6 15.1 19.5 8 8 A P G > S+ 0 0 106 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 0.822 123.7 56.3 -52.6 -32.2 9.5 15.6 22.1 9 9 A S G 3 S+ 0 0 110 1,-0.2 3,-0.2 2,-0.1 -3,-0.0 0.501 101.8 56.8 -76.6 -6.6 8.9 12.0 23.2 10 10 A Q G < + 0 0 15 -3,-2.0 -1,-0.2 1,-0.1 22,-0.2 0.147 68.6 114.1-111.8 16.4 9.4 10.7 19.6 11 11 A A < + 0 0 43 -3,-0.8 2,-0.3 -4,-0.1 -1,-0.1 0.427 66.5 65.0 -72.3 -1.2 12.9 12.1 19.1 12 12 A Q - 0 0 135 -3,-0.2 20,-0.5 42,-0.1 2,-0.3 -0.791 66.9-142.9-118.9 160.1 14.7 8.7 18.9 13 13 A F - 0 0 55 -2,-0.3 2,-0.3 18,-0.1 18,-0.2 -0.804 7.8-143.7-112.6 161.1 14.6 5.7 16.6 14 14 A T E -C 30 0A 98 16,-2.2 16,-2.9 -2,-0.3 2,-0.4 -0.875 16.7-135.5-115.0 163.2 14.8 2.0 17.2 15 15 A T E -C 29 0A 77 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.960 13.0-167.8-125.2 130.1 16.6 -0.5 15.0 16 16 A R E -C 28 0A 134 12,-2.5 12,-2.8 -2,-0.4 2,-0.3 -0.870 16.3-171.6-110.2 151.7 15.5 -3.9 13.8 17 17 A S E +C 27 0A 79 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.861 16.9 128.3-140.0 166.6 17.9 -6.3 12.1 18 18 A G E -C 26 0A 25 8,-1.5 8,-2.1 -2,-0.3 2,-0.4 -0.981 47.4 -74.5 173.5-166.1 18.1 -9.6 10.3 19 19 A V E -C 25 0A 100 -2,-0.3 5,-0.1 6,-0.2 -2,-0.0 -0.980 36.9-126.9-127.5 127.8 19.3 -11.5 7.2 20 20 A S > - 0 0 43 4,-3.0 3,-2.0 -2,-0.4 6,-0.0 -0.117 39.3 -90.7 -62.4 165.9 17.9 -11.4 3.7 21 21 A R T 3 S+ 0 0 118 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.777 125.1 39.1 -47.5 -38.0 16.9 -14.5 1.7 22 22 A Q T 3 S- 0 0 178 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 -0.012 128.2 -82.8-111.2 30.1 20.3 -15.0 0.1 23 23 A G S < S+ 0 0 48 -3,-2.0 -2,-0.1 1,-0.2 0, 0.0 0.124 79.4 133.3 103.1 -20.6 22.6 -14.0 3.1 24 24 A K - 0 0 149 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.2 -0.453 50.2-128.1 -70.3 131.5 22.9 -10.2 3.2 25 25 A P E -C 19 0A 96 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.409 28.4-173.1 -66.2 147.6 22.5 -8.4 6.6 26 26 A Y E -C 18 0A 89 -8,-2.1 -8,-1.5 -2,-0.1 2,-0.4 -0.979 13.8-162.3-138.7 159.1 20.1 -5.5 6.9 27 27 A S E -C 17 0A 76 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.996 5.2-164.6-140.2 134.7 19.1 -2.9 9.5 28 28 A L E -C 16 0A 51 -12,-2.8 -12,-2.5 -2,-0.4 2,-0.4 -0.987 8.0-151.4-122.7 127.1 16.0 -0.8 9.5 29 29 A N E -C 15 0A 38 -2,-0.4 20,-2.6 20,-0.3 2,-0.4 -0.806 16.1-167.2 -96.4 130.4 15.6 2.3 11.7 30 30 A E E -CD 14 48A 51 -16,-2.9 -16,-2.2 -2,-0.4 2,-0.3 -0.943 7.9-178.5-123.5 139.0 12.0 3.1 12.8 31 31 A Q E - D 0 47A 3 16,-2.5 16,-3.2 -2,-0.4 2,-0.3 -0.970 19.7-130.7-134.0 147.8 10.6 6.3 14.3 32 32 A L E + D 0 46A 76 -20,-0.5 2,-0.3 -2,-0.3 14,-0.2 -0.687 29.2 165.5 -97.2 155.2 7.0 7.2 15.5 33 33 A C E - D 0 45A 0 12,-1.8 12,-2.4 -2,-0.3 2,-0.4 -0.934 33.4-112.4-152.9 172.7 5.1 10.4 14.7 34 34 A Y E -AD 5 44A 85 -29,-2.5 -29,-3.0 -2,-0.3 2,-0.4 -0.970 27.3-168.1-115.0 132.0 1.6 11.9 14.8 35 35 A I E -AD 4 43A 13 8,-2.2 8,-2.7 -2,-0.4 2,-0.8 -0.985 20.5-131.8-124.5 132.1 -0.4 12.6 11.6 36 36 A D + 0 0 71 -33,-1.9 -33,-0.4 -2,-0.4 4,-0.0 -0.733 29.3 169.5 -84.6 111.0 -3.5 14.6 11.3 37 37 A L - 0 0 109 -2,-0.8 -1,-0.1 4,-0.3 3,-0.1 0.121 63.0 -95.1-106.9 20.0 -6.0 12.6 9.3 38 38 A G S S+ 0 0 66 1,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.637 87.5 122.3 80.1 12.9 -8.9 14.9 10.1 39 39 A N S S- 0 0 106 2,-0.3 -1,-0.2 1,-0.0 4,-0.0 -0.275 85.3 -82.4 -89.7-171.5 -10.3 12.9 13.0 40 40 A E S S+ 0 0 187 -2,-0.1 -2,-0.0 1,-0.1 -1,-0.0 0.861 114.6 16.0 -65.8 -32.0 -10.8 14.4 16.5 41 41 A Y S S- 0 0 192 -6,-0.1 -2,-0.3 -4,-0.0 -4,-0.3 -0.946 93.1 -94.3-132.8 153.6 -7.1 13.8 17.4 42 42 A P - 0 0 58 0, 0.0 2,-0.3 0, 0.0 -6,-0.2 -0.270 44.8-125.2 -54.5 151.1 -3.9 13.0 15.3 43 43 A V E -D 35 0A 51 -8,-2.7 -8,-2.2 -4,-0.0 2,-0.4 -0.780 16.5-107.7-107.8 151.8 -3.1 9.3 15.0 44 44 A L E -D 34 0A 100 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.598 40.2-179.5 -77.1 130.0 0.1 7.5 15.8 45 45 A V E -D 33 0A 43 -12,-2.4 -12,-1.8 -2,-0.4 2,-0.4 -0.987 23.2-132.2-133.3 134.4 2.1 6.3 12.6 46 46 A K E -D 32 0A 162 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.773 20.5-162.3 -90.4 133.9 5.4 4.3 12.3 47 47 A I E -D 31 0A 3 -16,-3.2 -16,-2.5 -2,-0.4 2,-0.6 -0.918 9.0-149.6-109.8 137.3 8.0 5.7 9.8 48 48 A T E -D 30 0A 35 -2,-0.4 -18,-0.2 -18,-0.2 33,-0.0 -0.952 24.1-137.9-108.2 122.8 10.9 3.6 8.5 49 49 A L - 0 0 6 -20,-2.6 -20,-0.3 -2,-0.6 2,-0.2 -0.238 15.3-108.2 -76.6 159.5 13.9 5.9 7.8 50 50 A D > - 0 0 49 1,-0.1 3,-1.7 4,-0.1 -1,-0.1 -0.586 52.3 -74.6 -83.8 158.4 16.2 5.8 4.7 51 51 A E T 3 S+ 0 0 198 1,-0.2 -1,-0.1 -2,-0.2 -23,-0.0 -0.162 115.9 9.4 -54.2 136.1 19.7 4.5 5.0 52 52 A G T 3 S+ 0 0 78 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.558 96.4 130.2 71.4 11.2 22.2 6.9 6.6 53 53 A Q < - 0 0 55 -3,-1.7 -1,-0.2 -24,-0.0 3,-0.1 -0.821 51.9-133.9 -99.7 131.0 19.5 9.3 7.8 54 54 A P - 0 0 98 0, 0.0 -4,-0.1 0, 0.0 2,-0.1 -0.229 39.1 -81.6 -64.6 163.9 19.2 10.6 11.4 55 55 A A - 0 0 23 -44,-0.1 2,-0.2 1,-0.1 -42,-0.1 -0.427 53.1-103.4 -64.2 140.3 16.0 10.6 13.3 56 56 A Y - 0 0 23 -46,-0.1 -1,-0.1 -2,-0.1 3,-0.1 -0.518 38.4-119.9 -61.5 136.9 13.8 13.7 12.5 57 57 A A - 0 0 59 -2,-0.2 -51,-0.2 1,-0.1 -1,-0.1 -0.350 42.6 -77.4 -71.2 158.3 14.1 16.3 15.3 58 58 A P S S+ 0 0 67 0, 0.0 2,-0.3 0, 0.0 -51,-0.2 -0.282 88.3 78.0 -53.2 140.0 10.8 17.4 17.2 59 59 A G E S-B 6 0A 28 -53,-1.9 -53,-2.4 -3,-0.1 2,-0.4 -0.906 80.2 -47.7 149.9-174.0 8.7 19.8 15.1 60 60 A L E +B 5 0A 83 -2,-0.3 26,-2.1 -55,-0.2 2,-0.3 -0.743 52.3 168.7-100.1 139.2 6.2 20.1 12.3 61 61 A Y E -BE 4 85A 26 -57,-2.9 -57,-2.6 -2,-0.4 2,-0.3 -0.892 21.7-148.0-142.1 159.9 6.7 18.5 8.9 62 62 A T E - E 0 84A 21 22,-2.6 22,-2.3 -2,-0.3 2,-0.4 -0.813 36.9 -89.3-125.1 174.7 4.9 17.8 5.7 63 63 A V E - E 0 83A 22 -61,-0.4 20,-0.2 -2,-0.3 2,-0.2 -0.746 35.0-133.4 -93.3 129.3 5.3 14.8 3.2 64 64 A H > - 0 0 90 18,-3.1 3,-2.1 -2,-0.4 18,-0.4 -0.493 20.4-119.3 -77.3 148.3 7.8 14.9 0.3 65 65 A L G > S+ 0 0 139 1,-0.3 3,-1.7 -2,-0.2 -1,-0.1 0.780 108.4 72.8 -54.5 -31.9 6.8 13.9 -3.2 66 66 A S G 3 S+ 0 0 54 1,-0.3 -1,-0.3 13,-0.0 14,-0.2 0.547 77.4 79.6 -63.8 -6.2 9.4 11.1 -3.2 67 67 A S G < S+ 0 0 0 -3,-2.1 12,-3.5 15,-0.2 13,-0.5 0.699 86.3 72.6 -68.8 -18.7 7.2 9.2 -0.7 68 68 A F E < +F 78 0B 72 -3,-1.7 2,-0.3 10,-0.2 10,-0.2 -0.641 51.9 166.4-110.4 151.5 5.0 8.0 -3.6 69 69 A K E -F 77 0B 107 8,-2.2 8,-2.6 -2,-0.2 2,-0.5 -0.975 42.1-102.1-149.6 158.7 5.4 5.5 -6.4 70 70 A V E -F 76 0B 98 -2,-0.3 6,-0.2 6,-0.2 2,-0.0 -0.801 45.9-139.8 -86.7 128.8 3.1 3.7 -8.9 71 71 A G > - 0 0 14 4,-2.8 3,-1.9 -2,-0.5 -1,-0.0 -0.161 28.5 -88.8 -80.2 178.3 2.5 0.1 -7.6 72 72 A Q T 3 S+ 0 0 177 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.614 125.6 53.1 -69.2 -12.3 2.3 -3.1 -9.5 73 73 A F T 3 S- 0 0 178 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.284 119.9-104.5-101.4 12.9 -1.4 -2.8 -10.2 74 74 A G S < S+ 0 0 61 -3,-1.9 2,-0.2 1,-0.3 -2,-0.1 0.474 84.8 115.7 82.6 3.1 -1.1 0.8 -11.7 75 75 A S S S- 0 0 70 1,-0.1 -4,-2.8 -5,-0.0 -1,-0.3 -0.637 73.6 -94.2-101.6 160.6 -2.4 2.7 -8.6 76 76 A L E +F 70 0B 121 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.520 46.8 177.3 -75.7 142.7 -0.5 5.1 -6.4 77 77 A M E -F 69 0B 87 -8,-2.6 -8,-2.2 -2,-0.2 2,-0.5 -0.945 33.4-109.5-136.6 160.6 1.1 3.7 -3.3 78 78 A I E -F 68 0B 94 -2,-0.3 -10,-0.2 -10,-0.2 3,-0.1 -0.805 26.0-175.6 -88.5 131.9 3.3 5.0 -0.5 79 79 A D S S- 0 0 78 -12,-3.5 2,-0.3 -2,-0.5 -1,-0.2 0.920 71.7 -27.4 -85.2 -70.3 6.8 3.7 -0.7 80 80 A R S S- 0 0 77 -13,-0.5 2,-0.6 -14,-0.2 -1,-0.3 -0.975 70.3-108.4-142.7 140.1 8.2 5.2 2.6 81 81 A L - 0 0 23 -2,-0.3 2,-0.5 -3,-0.1 -33,-0.1 -0.561 39.3-171.3 -73.1 113.9 7.0 8.4 4.2 82 82 A R - 0 0 44 -2,-0.6 -18,-3.1 -18,-0.4 2,-0.3 -0.924 9.2-152.6-109.6 127.7 9.8 10.9 3.6 83 83 A L E -E 63 0A 12 -2,-0.5 -20,-0.2 -20,-0.2 -22,-0.0 -0.740 16.0-171.3-109.6 151.6 9.4 14.2 5.5 84 84 A V E -E 62 0A 51 -22,-2.3 -22,-2.6 -2,-0.3 -2,-0.0 -0.990 40.9 -87.6-134.1 149.0 10.5 17.8 5.0 85 85 A P E E 61 0A 107 0, 0.0 -24,-0.3 0, 0.0 -26,-0.0 -0.162 360.0 360.0 -61.3 139.7 10.2 20.8 7.4 86 86 A A 0 0 100 -26,-2.1 -26,-0.1 -82,-0.1 -24,-0.0 -0.255 360.0 360.0 -74.3 360.0 7.0 22.7 7.4