==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 12-MAR-08 2VQC . COMPND 2 MOLECULE: HYPOTHETICAL 13.2 KDA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS VIRUS-LIKE PARTICLE SSV1; . AUTHOR S.K.MENON,P.KRAFT,G.J.CORN,B.WIEDENHEFT,M.J.YOUNG, C.M.LAWRE . 70 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4832.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 78.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 12.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A T 0 0 197 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 124.4 1.8 21.0 6.6 2 5 A L - 0 0 128 4,-0.0 2,-0.8 3,-0.0 3,-0.1 -0.937 360.0-113.5-120.1 139.9 3.2 23.7 8.8 3 6 A N > - 0 0 84 -2,-0.4 4,-1.9 1,-0.2 5,-0.2 -0.583 22.5-158.9 -72.5 107.3 1.4 26.7 10.2 4 7 A S H > S+ 0 0 40 -2,-0.8 4,-1.8 1,-0.2 -1,-0.2 0.828 90.5 53.4 -56.2 -36.0 3.2 29.7 8.6 5 8 A Y H > S+ 0 0 71 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.923 106.8 49.3 -68.0 -46.9 1.9 32.1 11.3 6 9 A K H > S+ 0 0 130 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.864 112.7 49.6 -58.5 -37.1 3.4 30.0 14.2 7 10 A X H X S+ 0 0 36 -4,-1.9 4,-1.8 1,-0.2 -1,-0.2 0.861 108.2 53.1 -68.3 -39.1 6.7 29.8 12.3 8 11 A A H X S+ 0 0 0 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.831 102.5 58.0 -67.1 -34.7 6.6 33.6 11.8 9 12 A E H X S+ 0 0 99 -4,-1.9 4,-1.5 2,-0.2 -1,-0.2 0.867 105.2 51.6 -61.1 -37.7 6.1 34.1 15.6 10 13 A I H X S+ 0 0 59 -4,-1.1 4,-1.4 1,-0.2 3,-0.2 0.944 111.7 46.3 -63.0 -46.5 9.4 32.2 16.1 11 14 A X H X S+ 0 0 1 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.838 104.7 62.5 -64.7 -33.6 11.1 34.5 13.6 12 15 A Y H X S+ 0 0 25 -4,-2.2 4,-1.3 1,-0.2 -1,-0.2 0.893 106.4 43.1 -63.6 -41.3 9.6 37.6 15.2 13 16 A K H X S+ 0 0 130 -4,-1.5 4,-1.3 -3,-0.2 -1,-0.2 0.780 111.2 55.2 -76.5 -24.1 11.3 37.0 18.5 14 17 A I H X S+ 0 0 38 -4,-1.4 4,-2.9 2,-0.2 5,-0.2 0.842 104.5 56.0 -68.0 -33.5 14.5 36.1 16.6 15 18 A L H X S+ 0 0 0 -4,-2.2 4,-3.1 2,-0.2 53,-0.3 0.883 104.0 52.4 -61.9 -42.4 14.1 39.6 15.0 16 19 A E H < S+ 0 0 103 -4,-1.3 -1,-0.2 2,-0.2 -2,-0.2 0.859 115.8 40.6 -62.9 -38.8 14.1 41.2 18.4 17 20 A K H < S+ 0 0 182 -4,-1.3 -2,-0.2 1,-0.1 -1,-0.2 0.910 124.0 36.8 -72.8 -45.9 17.3 39.5 19.4 18 21 A K H < S- 0 0 127 -4,-2.9 -2,-0.2 -5,-0.1 -3,-0.2 0.762 91.7-140.9 -85.5 -29.1 19.1 39.9 16.0 19 22 A G S < S+ 0 0 26 -4,-3.1 49,-2.6 -5,-0.2 2,-0.3 0.038 76.6 43.1 92.6 -25.6 17.8 43.4 15.1 20 23 A E E -A 67 0A 86 47,-0.2 2,-0.3 -6,-0.2 47,-0.2 -0.993 61.7-171.1-155.7 141.6 17.3 42.6 11.4 21 24 A L E +A 66 0A 2 45,-2.4 45,-2.9 -2,-0.3 2,-0.3 -0.999 5.2 176.3-140.4 143.0 15.9 39.7 9.3 22 25 A T >> - 0 0 25 -2,-0.3 3,-1.3 43,-0.2 4,-1.1 -0.822 51.9 -91.2-129.7 174.2 15.8 38.7 5.6 23 26 A L H >> S+ 0 0 21 41,-0.5 4,-2.3 1,-0.3 3,-0.6 0.869 123.5 63.1 -55.3 -37.4 14.5 35.6 3.8 24 27 A E H 3> S+ 0 0 94 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.813 98.5 55.1 -57.1 -34.4 17.9 34.0 4.1 25 28 A D H <> S+ 0 0 46 -3,-1.3 4,-2.2 2,-0.2 -1,-0.2 0.836 108.2 48.0 -67.5 -35.0 17.6 34.1 7.9 26 29 A I H - 0 0 61 -2,-0.2 4,-2.1 1,-0.1 -1,-0.2 -0.279 39.3-111.7 -76.2 165.2 12.5 25.5 0.7 34 37 A V H > S+ 0 0 73 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.925 117.2 51.4 -64.3 -47.6 12.3 29.0 -0.8 35 38 A P H > S+ 0 0 88 0, 0.0 4,-1.4 0, 0.0 -1,-0.2 0.911 111.9 47.9 -56.2 -42.2 8.6 28.8 -1.4 36 39 A S H > S+ 0 0 50 1,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.893 110.1 51.9 -62.8 -43.2 8.0 27.7 2.2 37 40 A A H X S+ 0 0 0 -4,-2.1 4,-2.7 1,-0.2 -1,-0.2 0.855 106.0 54.9 -62.9 -37.5 10.2 30.5 3.5 38 41 A Y H X S+ 0 0 121 -4,-2.2 4,-2.1 2,-0.2 -1,-0.2 0.841 104.6 53.8 -64.4 -35.8 8.2 33.0 1.4 39 42 A N H X S+ 0 0 62 -4,-1.4 4,-1.6 2,-0.2 -1,-0.2 0.899 111.9 45.0 -63.4 -40.9 4.9 31.8 3.1 40 43 A I H X S+ 0 0 7 -4,-1.6 4,-2.8 2,-0.2 -2,-0.2 0.915 110.6 53.5 -68.4 -44.5 6.5 32.5 6.5 41 44 A Q H X S+ 0 0 24 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.875 106.8 53.0 -56.8 -40.4 7.9 35.8 5.4 42 45 A R H X S+ 0 0 162 -4,-2.1 4,-1.4 2,-0.2 -1,-0.2 0.904 112.1 44.3 -62.5 -41.3 4.4 36.8 4.3 43 46 A A H X S+ 0 0 15 -4,-1.6 4,-2.0 2,-0.2 -2,-0.2 0.852 110.8 55.0 -71.3 -35.2 3.0 35.9 7.8 44 47 A L H X S+ 0 0 0 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.895 105.2 53.4 -62.7 -41.3 6.0 37.7 9.4 45 48 A K H X S+ 0 0 77 -4,-2.3 4,-2.0 2,-0.2 -1,-0.2 0.886 107.3 51.7 -59.2 -40.7 5.1 40.8 7.5 46 49 A A H X S+ 0 0 31 -4,-1.4 4,-0.9 2,-0.2 -2,-0.2 0.905 109.9 48.8 -64.1 -41.7 1.5 40.6 8.9 47 50 A I H >X S+ 0 0 6 -4,-2.0 3,-0.6 1,-0.2 4,-0.5 0.907 110.5 51.0 -63.6 -43.8 2.8 40.3 12.5 48 51 A a H >< S+ 0 0 2 -4,-2.4 3,-1.2 1,-0.2 7,-0.4 0.876 105.0 56.3 -61.0 -39.8 5.1 43.3 12.0 49 52 A E H 3< S+ 0 0 120 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.739 101.4 58.2 -66.6 -23.1 2.2 45.4 10.6 50 53 A R H << S+ 0 0 153 -4,-0.9 -1,-0.3 -3,-0.6 -2,-0.2 0.651 115.2 37.1 -75.7 -16.9 0.4 44.7 13.9 51 54 A H XX + 0 0 73 -3,-1.2 4,-2.6 -4,-0.5 3,-1.8 -0.535 64.8 159.1-134.3 66.9 3.3 46.2 15.8 52 55 A P T 34 S+ 0 0 92 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.685 75.6 61.2 -68.8 -17.2 4.5 49.2 13.8 53 56 A D T 34 S+ 0 0 110 1,-0.1 3,-0.1 -3,-0.1 -5,-0.0 0.589 117.1 30.0 -78.3 -14.1 6.1 50.7 16.9 54 57 A E T <4 S+ 0 0 30 -3,-1.8 15,-3.1 -6,-0.2 16,-0.9 0.732 120.8 41.9-109.3 -41.8 8.4 47.6 17.2 55 58 A a E < -B 68 0A 5 -4,-2.6 2,-0.4 -7,-0.4 -1,-0.2 -0.864 55.9-165.7-119.6 147.7 8.9 46.3 13.7 56 59 A E E -B 67 0A 85 11,-2.1 11,-2.7 -2,-0.3 2,-0.8 -0.990 13.2-147.7-134.2 122.8 9.6 48.0 10.4 57 60 A V E -B 66 0A 35 -2,-0.4 2,-1.2 9,-0.2 9,-0.2 -0.827 11.8-162.0 -90.0 108.9 9.4 46.3 7.0 58 61 A Q E -B 65 0A 48 7,-3.6 7,-1.3 -2,-0.8 2,-0.8 -0.718 8.5-172.2 -93.3 83.4 12.0 47.8 4.8 59 62 A Y E +B 64 0A 186 -2,-1.2 2,-0.3 5,-0.2 5,-0.2 -0.715 18.0 162.8 -77.3 111.7 10.7 46.8 1.3 60 63 A K - 0 0 74 -2,-0.8 -2,-0.0 3,-0.6 0, 0.0 -0.900 53.7-103.9-131.4 160.3 13.5 47.8 -1.1 61 64 A N S S+ 0 0 172 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 0.759 120.7 51.8 -57.7 -28.9 14.4 46.9 -4.7 62 65 A R S S- 0 0 184 1,-0.3 2,-0.3 0, 0.0 -1,-0.2 0.970 127.1 -48.3 -68.1 -54.4 17.2 44.7 -3.4 63 66 A K - 0 0 64 -5,-0.2 -3,-0.6 2,-0.0 2,-0.3 -0.955 56.7 -83.3-177.5 154.3 15.1 42.7 -0.9 64 67 A T E - B 0 59A 24 -2,-0.3 -41,-0.5 -5,-0.2 2,-0.4 -0.547 46.3-174.7 -67.9 129.1 12.5 42.8 1.9 65 68 A T E - B 0 58A 5 -7,-1.3 -7,-3.6 -2,-0.3 2,-0.4 -0.993 16.7-147.1-134.0 125.8 14.2 43.4 5.2 66 69 A F E -AB 21 57A 0 -45,-2.9 -45,-2.4 -2,-0.4 2,-0.4 -0.776 18.7-166.7 -90.9 133.3 12.6 43.4 8.7 67 70 A K E -AB 20 56A 82 -11,-2.7 -11,-2.1 -2,-0.4 2,-0.5 -0.984 20.0-133.6-126.0 132.2 14.1 45.8 11.2 68 71 A W E + B 0 55A 43 -49,-2.6 -13,-0.2 -2,-0.4 -14,-0.1 -0.735 32.3 165.1 -80.0 121.7 13.6 46.0 15.0 69 72 A I 0 0 72 -15,-3.1 -14,-0.2 -2,-0.5 -1,-0.1 0.256 360.0 360.0-124.8 10.7 13.0 49.6 15.9 70 73 A K 0 0 150 -16,-0.9 -16,-0.1 -54,-0.0 -2,-0.0 -0.240 360.0 360.0 -65.0 360.0 11.6 49.5 19.4