==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PEPTIDE BINDING PROTEIN 22-MAR-12 3VQF . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LNX; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR Y.AKIYOSHI,D.HAMADA,N.GODA,T.TENNO,H.NARITA,A.NAKAGAWA,M.FUR . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5275.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 62.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 29.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A S 0 0 113 0, 0.0 2,-0.3 0, 0.0 82,-0.2 0.000 360.0 360.0 360.0 164.0 -5.6 -2.3 -4.2 2 4 A F E -A 82 0A 53 80,-2.6 80,-2.8 2,-0.0 2,-0.4 -0.936 360.0-110.0-142.2 164.7 -6.2 -3.2 -0.6 3 5 A H E -A 81 0A 120 -2,-0.3 2,-0.4 78,-0.2 78,-0.2 -0.802 24.2-176.4-103.2 135.3 -8.6 -5.2 1.5 4 6 A V E -A 80 0A 1 76,-2.7 76,-3.2 -2,-0.4 2,-0.6 -0.999 8.5-160.5-128.3 128.0 -11.1 -3.8 4.0 5 7 A I E +A 79 0A 49 -2,-0.4 2,-0.4 74,-0.2 74,-0.2 -0.952 11.4 179.3-110.2 119.2 -13.4 -6.0 6.1 6 8 A L E -A 78 0A 2 72,-2.7 72,-2.8 -2,-0.6 2,-0.5 -0.949 12.3-153.6-114.4 139.9 -16.5 -4.4 7.6 7 9 A N E -A 77 0A 59 -2,-0.4 2,-0.3 70,-0.2 70,-0.2 -0.954 7.4-141.4-117.2 129.1 -18.9 -6.4 9.7 8 10 A K - 0 0 4 68,-2.6 7,-0.1 -2,-0.5 6,-0.0 -0.681 4.1-150.2 -83.5 137.3 -22.6 -5.6 10.1 9 11 A S S S+ 0 0 106 -2,-0.3 -1,-0.1 1,-0.2 67,-0.0 0.746 89.9 16.9 -76.1 -25.2 -24.2 -6.1 13.5 10 12 A S S > S- 0 0 54 66,-0.1 3,-1.7 4,-0.1 -1,-0.2 -0.976 85.0-115.4-140.1 150.6 -27.5 -6.9 11.9 11 13 A P T 3 S+ 0 0 53 0, 0.0 63,-0.1 0, 0.0 -1,-0.0 0.829 116.3 49.8 -59.6 -29.9 -28.2 -7.9 8.3 12 14 A E T 3 S+ 0 0 137 2,-0.1 2,-0.1 -3,-0.0 60,-0.1 0.520 83.9 116.4 -86.3 -4.4 -30.2 -4.7 7.6 13 15 A E < - 0 0 55 -3,-1.7 2,-0.2 59,-0.1 -5,-0.0 -0.424 61.9-134.3 -66.0 136.0 -27.5 -2.4 9.1 14 16 A Q - 0 0 154 -2,-0.1 24,-0.5 1,-0.1 -1,-0.1 -0.540 8.4-130.9 -84.7 158.7 -26.0 -0.0 6.6 15 17 A L - 0 0 6 2,-0.2 24,-2.8 -2,-0.2 25,-0.3 0.618 38.8-118.2 -83.8 -13.2 -22.3 0.5 6.4 16 18 A G S S+ 0 0 9 1,-0.3 18,-2.3 22,-0.2 2,-0.4 0.914 73.0 124.9 72.5 42.0 -22.5 4.3 6.4 17 19 A I E -B 33 0A 27 16,-0.2 2,-0.6 22,-0.1 -1,-0.3 -0.992 51.6-148.2-130.9 126.2 -21.0 4.8 3.0 18 20 A K E -B 32 0A 105 14,-2.5 13,-3.2 -2,-0.4 14,-0.9 -0.857 19.9-159.2 -93.6 121.5 -22.6 6.7 0.2 19 21 A L E +B 30 0A 21 -2,-0.6 2,-0.3 11,-0.2 11,-0.2 -0.845 14.3 176.4-106.4 137.9 -21.5 5.1 -3.1 20 22 A V E -B 29 0A 34 9,-2.6 9,-2.6 -2,-0.4 2,-0.2 -0.902 26.2-126.8-138.6 160.8 -21.7 7.0 -6.4 21 23 A R - 0 0 148 -2,-0.3 2,-0.3 7,-0.2 7,-0.1 -0.631 25.4-133.2 -97.9 164.9 -21.0 6.8 -10.1 22 24 A R - 0 0 81 3,-0.5 3,-0.4 5,-0.4 5,-0.1 -0.930 7.7-135.8-120.6 148.5 -18.9 9.4 -12.0 23 25 A V S S+ 0 0 149 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.859 99.4 35.1 -70.8 -32.4 -19.8 11.0 -15.3 24 26 A D S S+ 0 0 133 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 0.285 116.8 34.7-115.2 10.6 -16.4 10.7 -16.9 25 27 A E S S- 0 0 84 -3,-0.4 -3,-0.5 2,-0.1 -1,-0.1 -0.983 78.5-103.4-157.6 152.4 -14.8 7.5 -15.7 26 28 A P + 0 0 64 0, 0.0 35,-0.1 0, 0.0 2,-0.1 -0.319 66.1 67.5 -71.0 158.8 -15.8 4.0 -14.8 27 29 A G S S- 0 0 7 35,-0.4 2,-0.5 -5,-0.1 -5,-0.4 -0.334 73.3 -87.7 123.3 165.8 -16.1 2.7 -11.2 28 30 A V E - C 0 51A 0 23,-0.6 23,-2.7 31,-0.3 2,-0.3 -0.958 47.4-171.3-110.4 125.1 -18.0 2.9 -7.9 29 31 A F E -BC 20 50A 8 -9,-2.6 -9,-2.6 -2,-0.5 2,-0.6 -0.862 27.9-112.2-124.6 151.8 -16.7 5.6 -5.6 30 32 A I E -B 19 0A 1 19,-2.7 18,-3.1 -2,-0.3 -11,-0.2 -0.711 26.8-179.5 -82.0 119.7 -17.2 6.7 -2.0 31 33 A F E - 0 0 113 -13,-3.2 2,-0.3 -2,-0.6 -1,-0.2 0.879 68.2 -16.1 -82.6 -46.6 -18.9 10.0 -1.9 32 34 A N E -B 18 0A 55 -14,-0.9 -14,-2.5 15,-0.1 2,-0.5 -0.983 53.5-132.0-155.7 161.6 -18.9 10.3 1.9 33 35 A V E -B 17 0A 24 -2,-0.3 -16,-0.2 -16,-0.2 2,-0.2 -0.986 35.6-122.3-117.7 120.0 -18.5 8.2 5.0 34 36 A L > - 0 0 86 -18,-2.3 3,-2.1 -2,-0.5 6,-0.5 -0.435 29.7-106.0 -73.4 129.5 -21.2 8.8 7.6 35 37 A N T 3 S+ 0 0 156 1,-0.3 -1,-0.1 -2,-0.2 3,-0.1 -0.278 101.7 6.4 -55.0 128.6 -20.1 10.0 11.0 36 38 A G T 3 S+ 0 0 45 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.396 100.6 127.5 80.9 -2.4 -20.4 7.2 13.6 37 39 A G S <> S- 0 0 17 -3,-2.1 4,-2.7 -21,-0.2 5,-0.2 -0.135 78.2 -90.4 -78.4 178.9 -21.3 4.5 11.1 38 40 A V H > S+ 0 0 11 -24,-0.5 4,-2.0 1,-0.2 -22,-0.2 0.926 126.5 44.8 -56.8 -49.4 -19.7 1.1 10.6 39 41 A A H > S+ 0 0 1 -24,-2.8 4,-2.1 1,-0.2 6,-0.4 0.891 113.3 50.5 -64.9 -40.6 -17.2 2.4 8.0 40 42 A D H 4 S+ 0 0 65 -6,-0.5 -2,-0.2 -25,-0.3 -1,-0.2 0.937 111.0 48.0 -62.6 -47.0 -16.3 5.5 10.0 41 43 A R H < S+ 0 0 158 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.855 108.0 54.3 -66.1 -34.4 -15.7 3.5 13.2 42 44 A H H < S- 0 0 84 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.912 96.8-158.3 -63.0 -42.6 -13.5 1.1 11.3 43 45 A G < + 0 0 54 -4,-2.1 -3,-0.1 -5,-0.2 -1,-0.1 0.249 58.8 95.0 94.5 -10.4 -11.6 4.1 10.2 44 46 A Q + 0 0 77 -5,-0.3 -4,-0.1 2,-0.0 -1,-0.1 0.902 60.1 84.9 -86.4 -42.4 -9.8 3.0 7.0 45 47 A L - 0 0 11 -6,-0.4 2,-0.3 1,-0.0 -2,-0.1 -0.325 57.9-168.7 -67.7 144.1 -12.1 4.0 4.1 46 48 A E > - 0 0 102 -14,-0.0 3,-1.9 1,-0.0 -16,-0.2 -0.903 32.6 -83.1-129.4 154.6 -11.8 7.6 2.8 47 49 A E T 3 S+ 0 0 110 -2,-0.3 -16,-0.2 1,-0.2 3,-0.1 -0.304 114.9 25.6 -52.4 142.0 -13.8 9.8 0.5 48 50 A N T 3 S+ 0 0 100 -18,-3.1 -1,-0.2 1,-0.3 37,-0.2 0.297 84.7 141.9 81.3 -4.5 -13.0 9.2 -3.2 49 51 A D < - 0 0 2 -3,-1.9 -19,-2.7 35,-0.1 2,-0.5 -0.357 49.0-128.3 -57.7 146.8 -11.9 5.6 -2.6 50 52 A R E -CD 29 83A 39 33,-3.0 33,-2.3 -21,-0.2 2,-0.8 -0.881 7.3-141.2-103.9 130.8 -12.9 3.2 -5.3 51 53 A V E +CD 28 82A 0 -23,-2.7 -23,-0.6 -2,-0.5 31,-0.2 -0.827 23.5 174.3 -91.4 111.2 -14.7 -0.0 -4.5 52 54 A L E - 0 0 12 29,-2.6 7,-3.2 -2,-0.8 8,-0.7 0.713 64.3 -1.7 -88.6 -26.8 -13.4 -2.7 -6.9 53 55 A A E -ED 58 81A 14 28,-1.3 28,-2.3 5,-0.3 2,-0.4 -0.969 52.4-153.3-161.2 150.7 -15.2 -5.7 -5.5 54 56 A I E > S-ED 57 80A 0 3,-1.8 3,-2.2 -2,-0.3 26,-0.2 -0.989 84.7 -19.3-131.1 123.2 -17.5 -6.7 -2.7 55 57 A N T 3 S- 0 0 54 24,-2.8 25,-0.1 -2,-0.4 3,-0.1 0.826 129.8 -49.9 47.7 40.4 -17.4 -10.3 -1.4 56 58 A G T 3 S+ 0 0 72 23,-0.4 2,-0.6 1,-0.3 -1,-0.3 0.449 108.0 126.9 84.3 1.5 -15.7 -11.4 -4.6 57 59 A H E < -E 54 0A 102 -3,-2.2 -3,-1.8 10,-0.0 -1,-0.3 -0.840 62.9-122.1 -94.6 121.7 -18.1 -9.8 -6.9 58 60 A D E +E 53 0A 113 -2,-0.6 -5,-0.3 -5,-0.2 -6,-0.1 -0.391 37.3 167.1 -68.4 131.2 -16.3 -7.6 -9.4 59 61 A L > + 0 0 2 -7,-3.2 3,-1.8 -2,-0.1 -31,-0.3 0.170 41.0 114.2-125.9 14.4 -17.4 -3.9 -9.4 60 62 A R T 3 S+ 0 0 118 -8,-0.7 -7,-0.1 1,-0.3 -1,-0.1 0.918 101.6 17.9 -53.7 -44.5 -14.6 -2.4 -11.5 61 63 A F T 3 S+ 0 0 155 -9,-0.1 -1,-0.3 -35,-0.1 2,-0.1 -0.094 113.9 114.2-113.4 30.7 -17.2 -1.6 -14.2 62 64 A G < - 0 0 27 -3,-1.8 -35,-0.4 -10,-0.1 -3,-0.1 -0.204 60.8-110.2 -97.1-171.3 -20.1 -1.9 -11.9 63 65 A S > - 0 0 38 1,-0.1 4,-2.2 -2,-0.1 5,-0.1 -0.785 21.0-119.2-121.2 155.6 -22.8 0.3 -10.4 64 66 A P H > S+ 0 0 17 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.845 115.2 60.3 -64.4 -27.0 -23.6 1.7 -7.0 65 67 A E H > S+ 0 0 103 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.933 105.9 45.2 -65.1 -44.3 -26.9 -0.2 -7.2 66 68 A S H > S+ 0 0 48 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.929 112.0 53.0 -63.0 -43.0 -25.1 -3.5 -7.5 67 69 A A H X S+ 0 0 0 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.928 109.6 48.1 -56.9 -45.5 -22.8 -2.5 -4.7 68 70 A A H X S+ 0 0 52 -4,-2.6 4,-2.2 1,-0.2 -1,-0.2 0.893 110.8 51.4 -62.9 -40.6 -25.7 -1.7 -2.4 69 71 A H H X S+ 0 0 134 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.912 111.2 47.3 -62.5 -42.7 -27.4 -5.0 -3.3 70 72 A L H X S+ 0 0 19 -4,-2.5 4,-1.1 2,-0.2 -2,-0.2 0.877 109.8 52.4 -68.5 -39.3 -24.3 -7.0 -2.5 71 73 A I H >< S+ 0 0 19 -4,-2.4 3,-0.5 1,-0.2 -1,-0.2 0.936 112.7 45.7 -61.3 -44.8 -23.8 -5.2 0.8 72 74 A Q H 3< S+ 0 0 105 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.866 104.5 63.4 -64.6 -36.3 -27.3 -6.0 1.8 73 75 A A H 3< S+ 0 0 64 -4,-2.0 2,-0.3 -5,-0.2 -1,-0.2 0.768 85.3 85.5 -65.5 -28.2 -27.1 -9.6 0.7 74 76 A S S << S- 0 0 26 -4,-1.1 4,-0.1 -3,-0.5 -66,-0.0 -0.542 71.2-145.4 -79.3 137.6 -24.4 -10.5 3.2 75 77 A E S S- 0 0 134 -2,-0.3 -1,-0.1 2,-0.1 3,-0.1 0.907 82.2 -32.6 -65.2 -37.9 -25.6 -11.6 6.6 76 78 A R S S+ 0 0 151 1,-0.3 -68,-2.6 -69,-0.1 2,-0.3 0.480 112.8 79.2-146.1 -59.1 -22.6 -10.0 8.3 77 79 A R E -A 7 0A 132 -70,-0.2 2,-0.5 -72,-0.0 -1,-0.3 -0.513 43.9-175.9 -79.3 130.8 -19.2 -9.9 6.6 78 80 A V E -A 6 0A 0 -72,-2.8 -72,-2.7 -2,-0.3 2,-0.7 -0.930 5.0-169.1-125.6 104.8 -18.5 -7.4 3.9 79 81 A H E -A 5 0A 45 -2,-0.5 -24,-2.8 -74,-0.2 -23,-0.4 -0.855 10.3-170.1 -94.6 109.3 -15.1 -7.8 2.2 80 82 A L E -AD 4 54A 2 -76,-3.2 -76,-2.7 -2,-0.7 2,-0.5 -0.835 17.2-153.7-100.4 136.6 -14.2 -4.8 0.1 81 83 A V E -AD 3 53A 26 -28,-2.3 -29,-2.6 -2,-0.4 -28,-1.3 -0.961 31.8-177.9-102.0 128.5 -11.4 -4.6 -2.4 82 84 A V E -AD 2 51A 0 -80,-2.8 -80,-2.6 -2,-0.5 2,-0.3 -0.913 22.0-159.6-133.0 147.9 -10.5 -0.9 -2.6 83 85 A S E - D 0 50A 22 -33,-2.3 -33,-3.0 -2,-0.3 2,-0.4 -0.956 6.7-163.8-128.2 157.7 -8.2 1.4 -4.5 84 86 A R 0 0 87 -2,-0.3 -35,-0.1 -35,-0.2 -36,-0.1 -0.999 360.0 360.0-142.0 130.1 -7.1 4.9 -3.6 85 87 A Q 0 0 235 -2,-0.4 -1,-0.1 -37,-0.2 -36,-0.1 0.784 360.0 360.0 -89.2 360.0 -5.4 7.6 -5.8