==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PEPTIDE BINDING PROTEIN 23-MAR-12 3VQG . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE LNX; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR Y.AKIYOSHI,D.HAMADA,N.GODA,T.TENNO,H.NARITA,A.NAKAGAWA,M.FUR . 89 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5101.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 31.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 12.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A S 0 0 111 0, 0.0 2,-0.3 0, 0.0 82,-0.2 0.000 360.0 360.0 360.0 164.9 -5.7 0.8 -4.4 2 4 A F E -A 82 0A 50 80,-2.8 80,-2.9 2,-0.0 2,-0.4 -0.919 360.0-110.0-139.6 167.5 -6.3 -0.0 -0.7 3 5 A H E -A 81 0A 120 -2,-0.3 2,-0.4 78,-0.2 78,-0.2 -0.819 23.5-177.3-106.9 134.0 -8.8 -1.9 1.4 4 6 A V E -A 80 0A 1 76,-2.6 76,-3.5 -2,-0.4 2,-0.6 -0.998 7.9-162.8-127.6 127.4 -11.3 -0.5 3.9 5 7 A I E +A 79 0A 63 -2,-0.4 2,-0.4 74,-0.2 74,-0.2 -0.957 10.3 179.8-112.1 118.5 -13.6 -2.7 5.9 6 8 A L E -A 78 0A 2 72,-2.8 72,-2.9 -2,-0.6 2,-0.5 -0.925 13.2-150.5-114.2 143.5 -16.6 -1.2 7.5 7 9 A N E -A 77 0A 60 -2,-0.4 2,-0.3 70,-0.2 70,-0.2 -0.958 5.8-143.3-117.7 129.8 -19.1 -3.1 9.7 8 10 A K - 0 0 4 68,-2.6 7,-0.1 -2,-0.5 6,-0.0 -0.707 5.5-149.1 -85.0 139.1 -22.8 -2.3 10.0 9 11 A S S S+ 0 0 112 -2,-0.3 -1,-0.1 1,-0.2 67,-0.0 0.699 89.6 16.7 -80.2 -21.4 -24.3 -2.8 13.5 10 12 A S S > S- 0 0 42 66,-0.1 3,-1.8 1,-0.1 -1,-0.2 -0.979 86.4-112.9-144.4 152.9 -27.6 -3.6 11.8 11 13 A P T 3 S+ 0 0 51 0, 0.0 63,-0.1 0, 0.0 -1,-0.1 0.821 116.2 48.3 -60.4 -27.8 -28.3 -4.5 8.2 12 14 A E T 3 S+ 0 0 136 2,-0.1 2,-0.1 61,-0.0 60,-0.1 0.495 83.9 118.3 -88.6 -2.9 -30.2 -1.3 7.5 13 15 A E < - 0 0 51 -3,-1.8 2,-0.2 1,-0.1 -5,-0.0 -0.414 61.3-133.6 -66.1 134.9 -27.6 0.9 9.1 14 16 A Q - 0 0 103 76,-0.1 24,-0.5 -2,-0.1 -1,-0.1 -0.575 6.7-134.4 -83.8 153.2 -26.1 3.4 6.6 15 17 A L - 0 0 0 -2,-0.2 24,-2.7 2,-0.1 25,-0.4 0.663 41.3-119.3 -77.4 -17.9 -22.3 3.9 6.5 16 18 A G + 0 0 6 74,-1.5 18,-2.3 1,-0.3 2,-0.4 0.943 68.7 129.6 75.5 49.6 -22.7 7.7 6.4 17 19 A I E -B 33 0A 2 73,-2.1 73,-2.9 16,-0.2 2,-0.5 -1.000 47.9-148.0-132.5 133.1 -21.1 8.3 3.1 18 20 A K E -BC 32 89A 66 14,-2.6 13,-3.1 -2,-0.4 14,-1.2 -0.909 20.0-160.6 -99.4 128.3 -22.5 10.3 0.2 19 21 A L E -BC 30 88A 2 69,-3.1 69,-2.6 -2,-0.5 2,-0.3 -0.807 9.3-176.4-108.5 148.7 -21.5 9.0 -3.2 20 22 A V E -B 29 0A 28 9,-2.6 9,-2.6 -2,-0.3 2,-0.3 -0.947 19.0-137.4-138.6 159.3 -21.5 10.8 -6.6 21 23 A R - 0 0 138 -2,-0.3 2,-0.4 7,-0.2 7,-0.1 -0.714 21.4-136.5-104.7 167.1 -20.8 10.3 -10.2 22 24 A R - 0 0 65 3,-0.6 3,-0.5 5,-0.4 5,-0.1 -0.974 7.5-142.1-126.3 141.2 -19.0 12.7 -12.5 23 25 A V S S+ 0 0 158 -2,-0.4 -1,-0.1 1,-0.2 0, 0.0 0.887 100.4 45.7 -63.9 -37.6 -19.9 13.8 -16.0 24 26 A D S S+ 0 0 136 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 0.436 117.0 27.2 -96.9 -0.5 -16.3 13.9 -17.2 25 27 A E S S- 0 0 75 -3,-0.5 -3,-0.6 2,-0.1 -1,-0.1 -0.989 78.0-106.8-156.1 150.9 -14.8 10.7 -15.8 26 28 A P + 0 0 62 0, 0.0 35,-0.1 0, 0.0 2,-0.1 -0.328 65.8 71.9 -71.3 159.8 -15.9 7.2 -14.9 27 29 A G S S- 0 0 7 35,-0.4 2,-0.5 32,-0.1 -5,-0.4 -0.334 72.7 -92.2 123.3 162.0 -16.2 6.1 -11.3 28 30 A V E - D 0 51A 0 23,-0.5 23,-2.8 31,-0.2 2,-0.3 -0.961 47.3-169.8-110.6 122.7 -18.1 6.3 -8.0 29 31 A F E -BD 20 50A 8 -9,-2.6 -9,-2.6 -2,-0.5 2,-0.6 -0.867 27.3-111.2-122.8 149.5 -16.6 8.9 -5.7 30 32 A I E +B 19 0A 3 19,-2.6 18,-3.2 -2,-0.3 -11,-0.2 -0.677 27.7 179.9 -78.1 118.3 -17.0 10.0 -2.1 31 33 A F E - 0 0 104 -13,-3.1 2,-0.3 -2,-0.6 -1,-0.2 0.867 67.9 -21.8 -82.4 -47.1 -18.7 13.4 -2.0 32 34 A N E -B 18 0A 40 -14,-1.2 -14,-2.6 14,-0.1 2,-0.5 -0.985 52.2-129.8-157.8 165.9 -18.7 13.6 1.8 33 35 A V E -B 17 0A 28 -2,-0.3 -16,-0.2 -16,-0.2 2,-0.2 -0.990 34.9-122.9-120.7 122.0 -18.4 11.5 5.0 34 36 A L > - 0 0 55 -18,-2.3 3,-1.8 -2,-0.5 6,-0.4 -0.453 29.8-106.2 -72.9 131.7 -21.1 12.2 7.6 35 37 A N T 3 S+ 0 0 150 1,-0.2 -1,-0.1 -2,-0.2 3,-0.1 -0.322 101.0 7.8 -56.4 129.9 -19.9 13.3 11.0 36 38 A G T 3 S+ 0 0 42 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.1 0.340 99.4 125.5 82.2 -6.0 -20.3 10.5 13.6 37 39 A G S <> S- 0 0 15 -3,-1.8 4,-2.6 -21,-0.2 -1,-0.2 -0.110 79.7 -90.5 -75.4 178.9 -21.3 7.8 11.1 38 40 A V H > S+ 0 0 11 -24,-0.5 4,-1.8 1,-0.2 -22,-0.2 0.917 126.5 45.8 -57.3 -47.7 -19.7 4.4 10.6 39 41 A A H > S+ 0 0 1 -24,-2.7 4,-2.0 1,-0.2 6,-0.4 0.870 112.9 50.0 -66.7 -37.7 -17.3 5.7 8.0 40 42 A D H 4 S+ 0 0 63 -6,-0.4 -2,-0.2 -25,-0.4 -1,-0.2 0.928 110.6 49.1 -65.8 -45.9 -16.3 8.8 10.0 41 43 A R H < S+ 0 0 157 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.850 108.2 53.6 -63.9 -35.3 -15.6 6.8 13.1 42 44 A H H < S- 0 0 83 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.910 95.6-160.1 -64.5 -44.2 -13.5 4.3 11.2 43 45 A G < + 0 0 52 -4,-2.0 -3,-0.1 -5,-0.1 -1,-0.1 0.189 57.2 96.2 96.6 -13.8 -11.6 7.3 10.0 44 46 A Q + 0 0 75 -5,-0.2 -4,-0.1 2,-0.0 -1,-0.1 0.870 59.6 86.3 -83.6 -38.3 -9.8 6.2 6.9 45 47 A L - 0 0 11 -6,-0.4 2,-0.3 1,-0.0 -2,-0.1 -0.343 56.8-168.9 -71.2 143.3 -12.0 7.3 4.0 46 48 A E > - 0 0 103 -2,-0.1 3,-1.8 -14,-0.1 -16,-0.2 -0.894 32.6 -83.9-127.4 158.4 -11.6 10.8 2.6 47 49 A E T 3 S+ 0 0 125 -2,-0.3 -16,-0.2 1,-0.2 3,-0.1 -0.327 114.3 26.6 -56.9 143.7 -13.6 13.0 0.2 48 50 A N T 3 S+ 0 0 69 -18,-3.2 -1,-0.2 1,-0.3 37,-0.2 0.277 84.0 142.6 80.4 -5.7 -12.8 12.3 -3.4 49 51 A D < - 0 0 2 -3,-1.8 -19,-2.6 35,-0.1 2,-0.5 -0.370 49.2-129.9 -57.9 142.4 -11.8 8.7 -2.7 50 52 A R E -DE 29 83A 40 33,-2.9 33,-2.1 -21,-0.2 2,-0.8 -0.868 7.4-140.2-100.4 128.9 -13.0 6.4 -5.5 51 53 A V E +DE 28 82A 1 -23,-2.8 -23,-0.5 -2,-0.5 31,-0.2 -0.793 24.2 174.7 -88.8 111.4 -14.9 3.3 -4.7 52 54 A L E - 0 0 10 29,-2.9 7,-3.1 -2,-0.8 8,-0.8 0.733 63.8 -3.2 -87.9 -26.9 -13.6 0.6 -7.0 53 55 A A E -FE 58 81A 14 28,-1.3 28,-2.2 5,-0.3 2,-0.4 -0.975 52.2-150.9-162.9 150.0 -15.5 -2.4 -5.6 54 56 A I E > S-FE 57 80A 0 3,-1.9 3,-2.3 -2,-0.3 26,-0.2 -0.989 85.7 -19.6-129.6 122.2 -17.8 -3.3 -2.8 55 57 A N T 3 S- 0 0 40 24,-2.7 25,-0.1 -2,-0.4 3,-0.1 0.823 129.2 -50.6 49.4 37.8 -17.7 -6.9 -1.4 56 58 A G T 3 S+ 0 0 70 23,-0.4 2,-0.6 1,-0.3 -1,-0.3 0.423 108.3 126.3 85.2 0.4 -16.0 -8.1 -4.6 57 59 A H E < -F 54 0A 106 -3,-2.3 -3,-1.9 10,-0.0 -1,-0.3 -0.831 64.1-119.9 -94.4 122.3 -18.5 -6.5 -7.0 58 60 A D E +F 53 0A 110 -2,-0.6 -5,-0.3 -5,-0.2 -6,-0.1 -0.340 38.7 166.1 -67.2 132.4 -16.8 -4.2 -9.5 59 61 A L > + 0 0 1 -7,-3.1 3,-1.6 3,-0.1 -31,-0.2 0.192 41.7 113.2-127.2 12.6 -17.7 -0.6 -9.5 60 62 A R T 3 S+ 0 0 114 -8,-0.8 -7,-0.1 1,-0.3 -9,-0.0 0.914 102.1 17.9 -51.6 -45.2 -14.9 0.9 -11.6 61 63 A F T 3 S+ 0 0 153 -9,-0.1 -1,-0.3 -35,-0.1 2,-0.1 -0.031 114.2 110.9-114.2 29.6 -17.5 1.7 -14.2 62 64 A G < - 0 0 28 -3,-1.6 -35,-0.4 -10,-0.1 -3,-0.1 -0.187 61.9-108.4 -97.5-171.9 -20.4 1.4 -11.9 63 65 A S > - 0 0 38 1,-0.1 4,-2.1 -2,-0.1 3,-0.2 -0.791 21.7-117.6-120.9 156.1 -23.0 3.8 -10.4 64 66 A P H > S+ 0 0 0 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.846 115.9 59.3 -59.4 -32.5 -23.7 5.2 -6.9 65 67 A E H > S+ 0 0 91 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.914 105.4 46.9 -64.5 -42.1 -27.1 3.4 -7.1 66 68 A S H > S+ 0 0 46 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.926 110.4 53.6 -63.7 -43.1 -25.4 0.0 -7.5 67 69 A A H X S+ 0 0 0 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.927 108.7 49.0 -56.2 -46.1 -23.0 0.9 -4.6 68 70 A A H X S+ 0 0 22 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.913 111.2 49.9 -59.7 -43.6 -26.0 1.7 -2.4 69 71 A H H X S+ 0 0 134 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.903 112.3 46.9 -63.1 -42.6 -27.7 -1.6 -3.3 70 72 A L H X S+ 0 0 21 -4,-2.6 4,-1.0 2,-0.2 -1,-0.2 0.882 111.4 50.9 -68.5 -39.4 -24.5 -3.6 -2.6 71 73 A I H >< S+ 0 0 4 -4,-2.5 3,-0.5 -5,-0.2 -2,-0.2 0.929 112.5 47.1 -64.8 -43.3 -23.9 -1.9 0.7 72 74 A Q H 3< S+ 0 0 105 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.865 103.8 63.0 -61.5 -38.6 -27.5 -2.6 1.8 73 75 A A H 3< S+ 0 0 68 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.776 84.9 88.2 -63.5 -28.8 -27.3 -6.2 0.7 74 76 A S S << S- 0 0 18 -4,-1.0 4,-0.1 -3,-0.5 -19,-0.0 -0.478 70.4-145.9 -72.0 137.7 -24.6 -7.1 3.2 75 77 A E S S- 0 0 142 -2,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.920 83.0 -33.5 -66.1 -40.4 -25.8 -8.3 6.6 76 78 A R S S+ 0 0 150 1,-0.2 -68,-2.6 -69,-0.1 2,-0.3 0.504 112.9 81.6-145.1 -57.2 -22.7 -6.6 8.3 77 79 A R E -A 7 0A 123 -70,-0.2 2,-0.5 -72,-0.0 -1,-0.2 -0.477 42.9-176.3 -79.5 131.9 -19.4 -6.5 6.4 78 80 A V E -A 6 0A 0 -72,-2.9 -72,-2.8 -2,-0.3 2,-0.7 -0.901 5.2-170.2-126.1 102.2 -18.7 -3.9 3.8 79 81 A H E -A 5 0A 34 -2,-0.5 -24,-2.7 -74,-0.2 2,-0.4 -0.832 8.8-168.8 -93.5 111.3 -15.3 -4.4 2.1 80 82 A L E -AE 4 54A 2 -76,-3.5 -76,-2.6 -2,-0.7 2,-0.5 -0.841 16.3-153.5-101.4 135.8 -14.4 -1.4 -0.0 81 83 A V E -AE 3 53A 27 -28,-2.2 -29,-2.9 -2,-0.4 -28,-1.3 -0.957 31.6-176.8-102.4 126.6 -11.6 -1.4 -2.5 82 84 A V E -AE 2 51A 0 -80,-2.9 -80,-2.8 -2,-0.5 2,-0.3 -0.923 21.7-160.1-131.2 144.8 -10.7 2.3 -2.8 83 85 A S E - E 0 50A 22 -33,-2.1 -33,-2.9 -2,-0.3 2,-0.4 -0.947 8.5-164.7-125.7 155.7 -8.3 4.5 -4.7 84 86 A R 0 0 90 -2,-0.3 -35,-0.1 -35,-0.2 -36,-0.1 -1.000 360.0 360.0-142.1 132.7 -7.0 8.0 -3.8 85 87 A Q 0 0 219 -2,-0.4 -1,-0.1 -37,-0.2 -36,-0.1 0.793 360.0 360.0 -93.1 360.0 -5.3 10.7 -5.9 86 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 87 102 B V 0 0 107 0, 0.0 2,-0.5 0, 0.0 -67,-0.2 0.000 360.0 360.0 360.0 156.4 -25.8 12.6 -4.2 88 103 B T E -C 19 0A 28 -69,-2.6 -69,-3.1 2,-0.0 2,-0.4 -0.963 360.0-143.6-117.7 118.2 -26.5 9.0 -3.1 89 104 B L E C 18 0A 65 -2,-0.5 -71,-0.2 -71,-0.2 0, 0.0 -0.673 360.0 360.0 -82.7 130.8 -26.4 8.3 0.7 90 105 B V 0 0 10 -73,-2.9 -73,-2.1 -2,-0.4 -74,-1.5 -0.855 360.0 360.0-130.4 360.0 -25.0 4.9 1.6