==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM RECEPTOR 22-APR-08 2VSD . COMPND 2 MOLECULE: CHIR AB1; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR T.I.ARNON,J.T.KAISER,P.J.BJORKMAN . 93 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5499.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 38 40.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A L 0 0 70 0, 0.0 82,-0.3 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 102.5 56.4 4.6 -3.1 2 7 A P - 0 0 73 0, 0.0 80,-0.1 0, 0.0 0, 0.0 -0.393 360.0-108.2 -65.5 129.9 52.8 4.1 -4.3 3 8 A Q - 0 0 106 -2,-0.1 81,-0.1 1,-0.1 69,-0.1 -0.263 36.5-128.4 -50.4 130.4 50.5 7.2 -4.0 4 9 A P - 0 0 3 0, 0.0 82,-0.5 0, 0.0 2,-0.3 -0.356 15.6-137.9 -78.1 167.0 47.9 6.7 -1.2 5 10 A S E -A 25 0A 67 20,-1.6 20,-3.3 80,-0.2 2,-0.4 -0.967 11.3-149.4-127.4 151.3 44.2 7.1 -1.7 6 11 A L E -A 24 0A 19 -2,-0.3 2,-0.3 80,-0.3 18,-0.2 -0.909 8.9-170.1-124.6 135.0 41.7 8.8 0.7 7 12 A S E -A 23 0A 28 16,-2.1 16,-2.3 -2,-0.4 2,-0.4 -0.935 9.3-150.3-121.1 154.5 38.1 8.2 1.3 8 13 A L E -A 22 0A 9 -2,-0.3 14,-0.2 14,-0.2 3,-0.1 -0.988 12.2-144.0-124.1 128.4 35.6 10.3 3.3 9 14 A H E S+A 21 0A 116 12,-2.4 12,-2.4 -2,-0.4 2,-0.1 -0.991 85.7 19.8-140.6 129.1 32.5 8.9 5.2 10 15 A P S S+ 0 0 59 0, 0.0 -1,-0.3 0, 0.0 11,-0.1 0.707 74.3 165.1 -72.6 158.8 30.0 10.4 5.4 11 16 A S + 0 0 54 -3,-0.1 80,-0.4 -2,-0.1 2,-0.4 0.612 56.1 64.0-112.2 -19.1 30.6 12.7 2.4 12 17 A Q S S+ 0 0 164 1,-0.2 -1,-0.1 78,-0.1 80,-0.0 -0.877 107.0 5.9-113.0 144.0 27.0 14.1 1.8 13 18 A G S S+ 0 0 55 -2,-0.4 2,-0.3 1,-0.2 -1,-0.2 0.712 79.5 168.8 61.0 31.2 24.9 16.2 4.1 14 19 A V + 0 0 0 77,-0.5 79,-4.6 -3,-0.3 2,-0.3 -0.548 7.3 177.7 -77.1 134.4 27.7 16.6 6.7 15 20 A S > - 0 0 42 -2,-0.3 3,-2.1 77,-0.2 45,-0.3 -0.868 40.1 -71.2-129.0 162.9 26.9 19.3 9.4 16 21 A L T 3 S+ 0 0 91 -2,-0.3 45,-0.2 1,-0.2 3,-0.1 -0.319 120.1 32.6 -50.5 138.7 28.5 20.7 12.5 17 22 A G T 3 S+ 0 0 61 43,-3.2 -1,-0.2 1,-0.4 2,-0.1 0.106 91.8 118.1 94.1 -16.3 28.4 18.1 15.2 18 23 A D < - 0 0 63 -3,-2.1 42,-3.2 41,-0.1 2,-0.5 -0.452 62.9-126.9 -79.5 155.4 28.7 15.1 12.9 19 24 A T E - B 0 59A 90 40,-0.3 2,-0.3 -2,-0.1 40,-0.2 -0.881 26.5-167.2-101.2 130.1 31.7 12.8 13.1 20 25 A V E - B 0 58A 0 38,-2.8 38,-2.3 -2,-0.5 2,-0.5 -0.876 9.9-150.3-115.1 154.9 33.6 12.1 9.9 21 26 A T E -AB 9 57A 32 -12,-2.4 -12,-2.4 -2,-0.3 2,-0.6 -0.992 3.2-165.0-126.9 124.3 36.2 9.5 9.0 22 27 A L E -AB 8 56A 0 34,-2.6 34,-2.7 -2,-0.5 2,-0.6 -0.953 14.2-160.9-106.9 114.5 39.0 10.1 6.5 23 28 A R E -AB 7 55A 78 -16,-2.3 -16,-2.1 -2,-0.6 2,-0.7 -0.879 3.1-158.1-107.1 121.4 40.5 6.7 5.7 24 29 A a E -AB 6 54A 0 30,-3.2 30,-2.1 -2,-0.6 2,-0.5 -0.878 10.1-154.0-104.4 115.8 43.9 6.7 4.1 25 30 A H E +AB 5 53A 63 -20,-3.3 -20,-1.6 -2,-0.7 28,-0.2 -0.771 28.9 143.0 -94.4 126.5 44.7 3.6 2.1 26 31 A L - 0 0 17 26,-1.9 -23,-0.1 -2,-0.5 -2,-0.0 -0.906 48.7 -64.6-150.0 177.0 48.2 2.4 1.7 27 32 A P - 0 0 40 0, 0.0 2,-2.3 0, 0.0 24,-0.1 -0.147 56.0 -95.0 -65.1 163.8 50.5 -0.7 1.5 28 33 A R S S+ 0 0 142 22,-0.1 2,-0.3 2,-0.0 21,-0.1 -0.414 85.4 114.4 -80.0 63.0 51.0 -3.1 4.4 29 34 A M S S- 0 0 64 -2,-2.3 2,-0.2 22,-0.2 22,-0.1 -0.941 78.0 -99.3-121.5 151.3 54.3 -1.5 5.6 30 35 A A + 0 0 64 -2,-0.3 2,-0.3 20,-0.0 18,-0.2 -0.515 61.4 156.4 -64.9 134.6 54.8 0.3 8.9 31 36 A A E -C 47 0B 10 16,-1.8 16,-2.4 -2,-0.2 2,-0.5 -0.996 49.5-114.5-161.3 153.2 54.4 4.0 8.2 32 37 A W E -CD 46 74B 123 42,-2.4 42,-1.9 -2,-0.3 2,-0.4 -0.848 38.2-156.1 -87.6 127.3 53.7 7.5 9.6 33 38 A V E -CD 45 73B 0 12,-3.2 12,-2.2 -2,-0.5 2,-0.4 -0.911 5.5-159.3-112.5 137.0 50.5 8.7 8.0 34 39 A Q E -CD 44 72B 18 38,-3.2 38,-1.5 -2,-0.4 2,-0.5 -0.936 9.2-153.6-116.0 140.8 49.6 12.4 7.6 35 40 A L E -CD 43 71B 0 8,-3.3 7,-3.3 -2,-0.4 8,-1.7 -0.960 18.4-165.5-109.7 127.2 46.2 14.1 7.1 36 41 A W E -CD 41 70B 50 34,-3.1 34,-2.3 -2,-0.5 2,-0.4 -0.836 7.5-162.5-113.9 140.6 46.5 17.5 5.3 37 42 A L E > S-CD 40 69B 23 3,-3.1 3,-1.5 -2,-0.3 32,-0.2 -0.995 76.4 -15.4-125.4 121.7 43.8 20.2 5.1 38 43 A N T 3 S- 0 0 104 30,-2.7 31,-0.1 -2,-0.4 -1,-0.1 0.838 129.9 -52.1 54.8 35.3 44.1 23.0 2.5 39 44 A G T 3 S+ 0 0 47 29,-0.5 2,-0.4 1,-0.2 -1,-0.3 0.638 120.0 101.8 80.7 14.2 47.8 22.2 2.0 40 45 A T E < S-C 37 0B 97 -3,-1.5 -3,-3.1 0, 0.0 -1,-0.2 -0.988 80.3-103.0-129.3 138.9 48.7 22.3 5.7 41 46 A L E +C 36 0B 74 -2,-0.4 -5,-0.3 -5,-0.3 3,-0.1 -0.422 39.9 170.5 -60.9 129.0 49.3 19.3 8.0 42 47 A R E - 0 0 78 -7,-3.3 2,-0.3 1,-0.4 -6,-0.2 0.828 60.2 -4.1-101.4 -57.0 46.3 18.7 10.3 43 48 A F E -C 35 0B 74 -8,-1.7 -8,-3.3 2,-0.0 -1,-0.4 -0.919 54.5-169.0-133.5 155.7 46.9 15.2 12.0 44 49 A D E +C 34 0B 84 -2,-0.3 2,-0.3 -10,-0.3 -10,-0.2 -0.967 11.7 167.8-138.3 161.0 49.4 12.5 11.8 45 50 A K E -C 33 0B 75 -12,-2.2 -12,-3.2 -2,-0.3 2,-0.2 -0.979 35.8 -93.4-161.5 163.5 49.4 8.9 13.3 46 51 A E E -C 32 0B 113 -2,-0.3 2,-0.5 -14,-0.2 -14,-0.2 -0.536 26.2-158.3 -77.1 143.9 51.2 5.6 13.2 47 52 A K E -C 31 0B 2 -16,-2.4 -16,-1.8 -2,-0.2 7,-0.1 -0.928 19.1-133.1-124.6 106.8 50.0 2.8 10.9 48 53 A D > - 0 0 115 -2,-0.5 3,-1.4 -18,-0.2 -19,-0.1 -0.123 27.5-109.1 -47.9 147.4 51.1 -0.6 12.0 49 54 A K T 3 S+ 0 0 134 1,-0.3 -1,-0.1 -21,-0.1 -2,-0.0 0.832 114.8 54.7 -56.7 -34.8 52.5 -2.7 9.2 50 55 A E T 3 S+ 0 0 46 -22,-0.1 -1,-0.3 2,-0.0 2,-0.1 0.629 86.6 97.8 -78.0 -17.0 49.5 -5.1 9.1 51 56 A Q < - 0 0 76 -3,-1.4 -22,-0.2 1,-0.1 3,-0.1 -0.442 62.3-151.8 -70.5 143.3 46.8 -2.4 8.7 52 57 A D S S+ 0 0 76 1,-0.2 -26,-1.9 -2,-0.1 2,-0.3 0.594 78.9 8.4 -85.2 -13.9 45.5 -1.6 5.1 53 58 A A E -B 25 0A 5 -28,-0.2 2,-0.4 2,-0.0 -28,-0.2 -0.982 62.3-127.8-158.8 157.1 44.7 2.0 6.2 54 59 A A E -B 24 0A 0 -30,-2.1 -30,-3.2 -2,-0.3 2,-0.4 -0.961 30.8-152.8-107.6 138.8 45.1 4.7 8.8 55 60 A E E -B 23 0A 78 -2,-0.4 2,-0.6 -32,-0.2 -32,-0.2 -0.950 9.5-162.0-115.3 134.0 41.7 6.3 9.8 56 61 A F E -B 22 0A 10 -34,-2.7 -34,-2.6 -2,-0.4 2,-0.5 -0.955 15.9-178.5-111.8 110.3 41.4 9.8 11.1 57 62 A S E +B 21 0A 67 -2,-0.6 2,-0.3 -36,-0.2 -36,-0.2 -0.940 12.4 152.5-113.2 131.3 38.0 10.2 12.8 58 63 A F E -B 20 0A 20 -38,-2.3 -38,-2.8 -2,-0.5 2,-0.3 -0.986 43.3-103.3-152.7 158.4 37.0 13.5 14.3 59 64 A A E -B 19 0A 44 -2,-0.3 2,-0.7 -40,-0.2 -40,-0.3 -0.642 33.0-122.5 -81.8 141.6 34.0 15.6 15.1 60 65 A V + 0 0 1 -42,-3.2 -43,-3.2 -2,-0.3 3,-0.1 -0.777 43.6 162.7 -79.1 113.4 33.1 18.5 12.8 61 66 A T + 0 0 96 -2,-0.7 2,-0.3 1,-0.2 -1,-0.2 0.469 53.7 14.0-117.5 -7.2 33.2 21.4 15.3 62 67 A N S > S- 0 0 59 1,-0.1 3,-1.8 0, 0.0 -1,-0.2 -0.994 76.6 -99.1-162.9 169.1 33.5 24.5 13.2 63 68 A L G > S+ 0 0 134 -2,-0.3 3,-1.4 1,-0.3 29,-0.1 0.733 112.3 69.0 -64.1 -24.6 33.2 26.0 9.7 64 69 A E G 3 S+ 0 0 160 1,-0.3 -1,-0.3 -3,-0.0 -4,-0.0 0.536 80.5 77.5 -74.6 -4.5 37.0 25.8 9.2 65 70 A D G < S+ 0 0 4 -3,-1.8 -1,-0.3 2,-0.0 -2,-0.2 0.715 77.3 93.3 -72.1 -21.1 36.8 22.0 9.1 66 71 A A < + 0 0 32 -3,-1.4 2,-0.3 -4,-0.2 25,-0.2 -0.276 62.3 67.0 -65.2 153.7 35.4 22.3 5.5 67 72 A G E S- E 0 90B 8 23,-2.3 23,-2.6 -30,-0.1 2,-0.7 -0.881 83.1 -20.5 138.5-159.5 38.0 22.1 2.7 68 73 A T E - E 0 89B 41 -2,-0.3 -30,-2.7 21,-0.2 -29,-0.5 -0.786 51.4-165.9-100.6 111.2 40.4 20.0 0.8 69 74 A Y E +DE 37 88B 0 19,-3.0 19,-2.3 -2,-0.7 2,-0.3 -0.778 13.2 165.1 -95.4 138.9 41.7 16.9 2.5 70 75 A Q E -D 36 0B 44 -34,-2.3 -34,-3.1 -2,-0.4 2,-0.3 -0.964 21.0-142.5-141.5 159.9 44.7 14.8 1.4 71 76 A a E +D 35 0B 0 -2,-0.3 14,-2.9 -36,-0.2 2,-0.3 -0.937 13.9 180.0-130.1 155.6 46.9 12.1 2.9 72 77 A R E -D 34 0B 59 -38,-1.5 -38,-3.2 -2,-0.3 2,-0.3 -0.960 10.8-154.9-143.7 147.0 50.7 11.4 2.6 73 78 A Y E -D 33 0B 0 -2,-0.3 9,-3.0 10,-0.3 2,-0.3 -0.958 6.7-166.5-135.8 158.0 52.8 8.7 4.2 74 79 A Q E -DF 32 81B 65 -42,-1.9 -42,-2.4 -2,-0.3 2,-0.3 -0.989 7.6-171.1-143.6 144.1 56.4 8.3 5.1 75 80 A V E > - F 0 80B 26 5,-2.4 5,-1.4 -2,-0.3 -44,-0.1 -0.936 17.2-150.1-131.0 157.3 59.0 5.7 6.1 76 81 A S E 5S+ F 0 79B 80 -2,-0.3 3,-0.3 1,-0.2 -45,-0.1 0.446 77.9 81.1-107.7 -1.5 62.5 6.0 7.4 77 82 A E T 5S+ 0 0 174 1,-0.7 -1,-0.2 3,-0.1 2,-0.2 -0.788 116.7 11.2-142.4 92.0 64.0 2.7 6.1 78 83 A P T 5S- 0 0 70 0, 0.0 2,-1.5 0, 0.0 -1,-0.7 0.681 107.9-115.2 -73.2 179.0 64.5 3.7 3.2 79 84 A L E 5 +F 76 0B 154 -3,-0.3 2,-0.3 -2,-0.2 -3,-0.2 -0.616 62.4 144.3 -89.5 85.9 63.9 7.5 3.6 80 85 A W E < -F 75 0B 148 -2,-1.5 -5,-2.4 -5,-1.4 2,-0.3 -0.916 33.7-167.8-130.8 144.2 60.9 7.9 1.5 81 86 A T E -F 74 0B 62 -2,-0.3 -7,-0.2 -7,-0.2 2,-0.1 -0.975 21.0-129.3-126.6 146.6 57.7 9.9 1.3 82 87 A S - 0 0 4 -9,-3.0 2,-0.2 -2,-0.3 -79,-0.1 -0.362 28.4-106.3 -76.2 167.5 54.6 9.4 -0.8 83 88 A N - 0 0 132 -82,-0.3 -10,-0.3 1,-0.1 -1,-0.1 -0.476 53.3 -79.8 -76.8 164.6 53.0 12.1 -2.9 84 89 A Q - 0 0 44 -2,-0.2 -12,-0.2 -12,-0.1 -1,-0.1 -0.419 49.5-110.8 -57.8 140.9 49.7 13.5 -1.6 85 90 A S - 0 0 1 -14,-2.9 -80,-0.2 1,-0.1 -1,-0.1 -0.211 46.6 -82.0 -55.0 161.1 46.6 11.5 -2.3 86 91 A D - 0 0 114 -82,-0.5 -80,-0.3 1,-0.1 -15,-0.2 -0.466 66.5 -94.6 -59.5 149.2 44.1 12.9 -4.8 87 92 A P - 0 0 77 0, 0.0 2,-0.4 0, 0.0 -17,-0.2 -0.274 32.2-161.5 -75.7 152.7 41.9 15.4 -2.8 88 93 A V E -E 69 0B 35 -19,-2.3 -19,-3.0 -3,-0.1 2,-0.5 -0.998 18.2-139.3-128.5 133.4 38.6 14.7 -1.1 89 94 A E E -E 68 0B 95 -2,-0.4 2,-0.6 -21,-0.2 -21,-0.2 -0.810 3.8-151.2 -99.8 126.1 36.5 17.7 -0.2 90 95 A L E -E 67 0B 1 -23,-2.6 -23,-2.3 -2,-0.5 2,-0.5 -0.877 19.5-172.1 -88.7 117.9 34.5 18.1 3.1 91 96 A V - 0 0 95 -2,-0.6 2,-0.5 -80,-0.4 -77,-0.5 -0.955 15.3-135.4-115.2 126.7 31.5 20.3 2.3 92 97 A L 0 0 35 -2,-0.5 -77,-0.2 -29,-0.1 -80,-0.0 -0.757 360.0 360.0 -97.5 127.3 29.4 21.4 5.2 93 98 A T 0 0 136 -79,-4.6 -80,-0.1 -2,-0.5 -2,-0.1 -0.547 360.0 360.0 87.1 360.0 25.7 21.4 5.3