==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TARGETING PEPTIDE 14-NOV-95 1VTP . COMPND 2 MOLECULE: VACUOLAR TARGETING PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA ALATA; . AUTHOR K.J.NIELSEN,J.M.HILL,M.A.ANDERSON,D.J.CRAIK . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2914.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 65.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 46.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S >> 0 0 138 0, 0.0 3,-0.8 0, 0.0 4,-0.5 0.000 360.0 360.0 360.0 -69.9 -8.6 7.0 10.2 2 2 A E T 34 + 0 0 130 1,-0.2 0, 0.0 3,-0.2 0, 0.0 -0.078 360.0 103.0 -85.7 36.3 -7.7 6.6 6.5 3 3 A Y T 34 S- 0 0 210 -2,-0.3 -1,-0.2 3,-0.1 0, 0.0 0.727 106.5 -9.7 -89.9 -26.6 -10.4 9.1 5.6 4 4 A A T <4 S+ 0 0 77 -3,-0.8 -2,-0.1 3,-0.0 4,-0.1 0.237 134.6 57.1-155.4 8.2 -8.2 12.1 5.0 5 5 A S S >X S+ 0 0 76 -4,-0.5 4,-1.5 2,-0.1 3,-1.3 0.767 110.4 37.3-106.4 -64.9 -4.8 11.1 6.3 6 6 A K H 3> S+ 0 0 114 -5,-0.4 4,-2.7 1,-0.2 5,-0.3 0.710 99.5 84.4 -62.5 -19.1 -3.9 7.9 4.2 7 7 A V H 34 S+ 0 0 73 1,-0.2 -1,-0.2 2,-0.2 4,-0.1 0.862 105.6 24.9 -50.5 -41.1 -5.7 9.7 1.3 8 8 A D H <4 S+ 0 0 115 -3,-1.3 4,-0.5 2,-0.2 3,-0.3 0.835 120.2 55.6 -93.2 -43.2 -2.4 11.5 0.6 9 9 A E H < S+ 0 0 168 -4,-1.5 3,-0.2 1,-0.2 4,-0.2 0.809 117.6 37.6 -61.7 -30.3 0.1 9.0 2.1 10 10 A Y S >X S+ 0 0 111 -4,-2.7 4,-2.0 -5,-0.2 3,-0.8 0.543 87.1 100.1 -96.4 -13.1 -1.3 6.2 -0.1 11 11 A V H 3> S+ 0 0 79 -5,-0.3 4,-2.5 -3,-0.3 5,-0.2 0.832 77.4 60.4 -42.3 -40.2 -1.9 8.5 -3.2 12 12 A G H 3> S+ 0 0 43 -4,-0.5 4,-2.2 1,-0.2 -1,-0.2 0.952 106.2 44.4 -56.2 -52.0 1.4 7.1 -4.7 13 13 A E H <> S+ 0 0 112 -3,-0.8 4,-2.6 2,-0.2 -1,-0.2 0.892 109.7 57.0 -62.0 -38.4 0.0 3.5 -4.6 14 14 A V H X S+ 0 0 71 -4,-2.0 4,-2.7 1,-0.2 -1,-0.2 0.959 107.4 48.2 -56.9 -50.0 -3.3 4.7 -6.1 15 15 A E H X S+ 0 0 103 -4,-2.5 4,-2.8 1,-0.2 -1,-0.2 0.920 109.0 54.1 -55.2 -46.4 -1.4 6.2 -9.0 16 16 A N H X S+ 0 0 85 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.934 109.8 46.7 -54.2 -49.3 0.4 2.9 -9.5 17 17 A D H X S+ 0 0 99 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.938 111.1 51.9 -59.0 -48.7 -2.9 1.0 -9.7 18 18 A L H X S+ 0 0 107 -4,-2.7 4,-2.9 1,-0.2 -2,-0.2 0.927 102.8 59.7 -52.9 -50.8 -4.3 3.6 -12.1 19 19 A Q H < S+ 0 0 118 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.896 114.1 36.4 -43.2 -53.5 -1.2 3.2 -14.3 20 20 A K H >< S+ 0 0 149 -4,-1.6 3,-0.7 -3,-0.2 -2,-0.2 0.945 114.6 54.0 -67.6 -53.0 -2.0 -0.5 -14.8 21 21 A S H 3< S+ 0 0 97 -4,-2.9 2,-0.3 1,-0.3 -2,-0.2 0.870 128.4 18.4 -50.5 -45.9 -5.8 -0.3 -14.8 22 22 A K T 3< S+ 0 0 156 -4,-2.9 2,-1.3 -5,-0.2 -1,-0.3 -0.767 70.7 174.8-132.9 83.3 -5.8 2.3 -17.7 23 23 A V S < S- 0 0 99 -3,-0.7 -4,-0.1 -2,-0.3 -3,-0.1 -0.331 73.7 -79.6 -87.0 52.3 -2.3 2.0 -19.3 24 24 A A S S- 0 0 92 -2,-1.3 -1,-0.1 -5,-0.1 -2,-0.1 0.800 85.8 -74.9 53.6 32.0 -3.3 4.5 -22.0 25 25 A V 0 0 110 0, 0.0 -3,-0.1 0, 0.0 0, 0.0 0.308 360.0 360.0 64.8 162.1 -5.1 1.6 -23.8 26 26 A S 0 0 182 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.415 360.0 360.0 -64.0 360.0 -3.4 -1.2 -25.7