==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/ANTIVIRAL PROTEIN 02-JUN-12 3VTP . COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN GP41; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.YAO,S.WALTERSPERGER,M.WANG,S.CUI . 68 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6325.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 89.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 85.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 550 C Q > 0 0 194 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -52.8 14.1 -15.5 -48.5 2 551 C Q H > + 0 0 153 1,-0.2 4,-1.4 2,-0.2 5,-0.1 0.866 360.0 51.6 -53.9 -37.2 17.1 -16.8 -46.5 3 552 C Q H > S+ 0 0 136 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.872 107.7 48.3 -71.9 -41.3 18.2 -13.2 -46.0 4 553 C N H > S+ 0 0 85 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.867 110.0 53.3 -68.5 -37.2 14.9 -11.9 -44.6 5 554 C N H X S+ 0 0 83 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.880 109.7 49.2 -62.0 -37.5 14.7 -14.8 -42.2 6 555 C L H X S+ 0 0 110 -4,-1.4 4,-2.4 -5,-0.2 -2,-0.2 0.904 111.0 48.5 -70.4 -42.7 18.2 -14.0 -41.0 7 556 C L H X S+ 0 0 28 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.935 112.8 48.1 -60.6 -47.0 17.4 -10.3 -40.5 8 557 C R H X S+ 0 0 158 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.860 110.3 53.2 -61.7 -36.4 14.2 -11.2 -38.6 9 558 C A H X S+ 0 0 44 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.917 109.8 46.5 -66.1 -45.2 16.2 -13.7 -36.5 10 559 C I H X S+ 0 0 72 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.899 110.2 54.3 -62.4 -42.7 18.8 -11.1 -35.5 11 560 C E H X S+ 0 0 87 -4,-2.4 4,-1.3 1,-0.2 -2,-0.2 0.925 113.1 42.0 -55.8 -47.6 16.0 -8.6 -34.7 12 561 C A H X S+ 0 0 51 -4,-2.1 4,-2.0 1,-0.2 -1,-0.2 0.852 112.5 54.4 -68.6 -36.8 14.3 -11.1 -32.3 13 562 C Q H X S+ 0 0 121 -4,-2.4 4,-2.7 1,-0.2 -2,-0.2 0.832 103.8 55.3 -67.4 -32.7 17.7 -12.1 -30.9 14 563 C Q H X S+ 0 0 14 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.861 106.7 51.0 -66.9 -36.3 18.4 -8.5 -30.1 15 564 C H H X S+ 0 0 103 -4,-1.3 4,-1.9 2,-0.2 -2,-0.2 0.922 110.4 49.5 -63.5 -43.9 15.1 -8.4 -28.1 16 565 C L H X S+ 0 0 109 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.934 110.1 50.2 -57.6 -50.3 16.3 -11.6 -26.3 17 566 C L H X S+ 0 0 95 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.904 108.1 53.4 -56.0 -44.1 19.7 -10.0 -25.5 18 567 C Q H X S+ 0 0 68 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.876 108.6 49.9 -61.0 -37.8 17.9 -6.9 -24.2 19 568 C L H X S+ 0 0 112 -4,-1.9 4,-2.2 2,-0.2 -1,-0.2 0.893 109.5 50.6 -65.6 -41.6 15.8 -9.1 -21.8 20 569 C T H X S+ 0 0 77 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.889 109.1 51.8 -65.8 -36.7 18.9 -10.9 -20.5 21 570 C V H X S+ 0 0 19 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.912 108.6 51.0 -63.8 -43.2 20.6 -7.5 -19.9 22 571 C W H X S+ 0 0 158 -4,-2.0 4,-2.2 1,-0.2 -2,-0.2 0.925 111.9 48.1 -55.1 -46.8 17.5 -6.4 -17.9 23 572 C G H X S+ 0 0 19 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.918 110.3 49.4 -62.9 -46.7 17.7 -9.6 -15.9 24 573 C I H X S+ 0 0 71 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.895 110.8 50.7 -62.3 -41.2 21.4 -9.3 -15.1 25 574 C K H X S+ 0 0 82 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.910 110.2 50.0 -63.3 -42.4 21.0 -5.7 -14.0 26 575 C Q H X S+ 0 0 83 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.929 113.0 46.6 -58.2 -49.6 18.1 -6.6 -11.6 27 576 C L H X S+ 0 0 91 -4,-2.5 4,-2.8 1,-0.2 5,-0.3 0.873 109.0 54.2 -63.0 -41.5 20.2 -9.5 -10.1 28 577 C Q H X S+ 0 0 55 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.905 110.1 47.2 -60.5 -43.4 23.2 -7.3 -9.7 29 578 C A H X S+ 0 0 55 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.903 114.1 48.0 -64.5 -40.2 21.2 -4.7 -7.7 30 579 C R H X S+ 0 0 164 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.901 112.7 46.1 -70.7 -42.2 19.7 -7.4 -5.6 31 580 C I H X S+ 0 0 96 -4,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.909 112.6 52.0 -64.9 -41.9 22.9 -9.2 -4.8 32 581 C L H X S+ 0 0 46 -4,-2.1 4,-2.4 -5,-0.3 -2,-0.2 0.902 108.3 50.8 -61.2 -42.6 24.6 -5.8 -4.0 33 582 C A H X S+ 0 0 55 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.895 111.5 48.0 -61.7 -43.1 21.7 -5.0 -1.6 34 583 C V H X S+ 0 0 86 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.913 110.7 51.0 -62.0 -45.0 22.2 -8.3 0.2 35 584 C E H X S+ 0 0 110 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.913 113.3 45.2 -59.9 -44.7 25.9 -7.8 0.4 36 585 C R H X S+ 0 0 148 -4,-2.4 4,-2.9 2,-0.2 -1,-0.2 0.882 110.3 54.5 -66.8 -41.8 25.4 -4.4 1.9 37 586 C Y H X S+ 0 0 150 -4,-2.4 4,-1.4 2,-0.2 -2,-0.2 0.938 110.9 45.2 -54.8 -50.2 22.8 -5.7 4.3 38 587 C L H < S+ 0 0 105 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.885 113.7 50.0 -64.6 -39.4 25.1 -8.3 5.6 39 588 C K H < S+ 0 0 170 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.897 111.2 48.9 -63.0 -41.3 27.9 -5.8 5.9 40 589 C D H < 0 0 125 -4,-2.9 -1,-0.2 -5,-0.1 -2,-0.2 0.741 360.0 360.0 -72.7 -22.4 25.7 -3.4 7.8 41 590 C Q < 0 0 164 -4,-1.4 -3,-0.0 -5,-0.2 0, 0.0 -0.404 360.0 360.0 -78.1 360.0 24.6 -6.2 10.1 42 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 43 626 D M 0 0 163 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 134.1 35.9 -4.7 -16.2 44 627 D T > - 0 0 84 1,-0.1 4,-2.4 0, 0.0 5,-0.1 -0.763 360.0-112.4-118.7 169.8 33.4 -2.7 -14.0 45 628 D W H > S+ 0 0 127 -2,-0.3 4,-2.3 2,-0.2 5,-0.1 0.808 117.8 54.4 -73.8 -29.5 29.6 -2.6 -14.0 46 629 D M H > S+ 0 0 165 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.912 112.9 42.1 -68.5 -42.9 29.7 1.0 -15.1 47 630 D E H > S+ 0 0 53 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.873 111.1 57.6 -69.2 -38.4 31.9 0.1 -18.1 48 631 D W H X S+ 0 0 55 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.944 107.7 46.6 -54.5 -49.8 29.7 -3.0 -18.7 49 632 D D H X S+ 0 0 56 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.908 111.8 51.6 -62.6 -41.1 26.6 -0.8 -19.0 50 633 D R H X S+ 0 0 126 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.933 112.7 43.9 -60.6 -48.5 28.4 1.6 -21.3 51 634 D E H X S+ 0 0 58 -4,-2.6 4,-2.6 2,-0.2 5,-0.3 0.866 110.7 54.9 -67.8 -40.0 29.6 -1.1 -23.7 52 635 D I H X S+ 0 0 40 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.940 110.8 46.2 -54.0 -49.2 26.3 -2.8 -23.7 53 636 D N H X S+ 0 0 79 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.868 111.3 52.5 -63.6 -39.9 24.7 0.5 -24.8 54 637 D N H X S+ 0 0 80 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.944 113.2 42.1 -59.6 -53.1 27.3 1.0 -27.5 55 638 D Y H X S+ 0 0 142 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.880 113.2 53.6 -65.9 -37.5 26.9 -2.4 -29.1 56 639 D T H X S+ 0 0 29 -4,-2.3 4,-2.5 -5,-0.3 -1,-0.2 0.920 109.6 47.1 -63.7 -44.8 23.1 -2.2 -28.8 57 640 D S H X S+ 0 0 70 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.893 112.0 51.3 -63.0 -41.8 22.9 1.2 -30.6 58 641 D L H X S+ 0 0 93 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.935 110.5 48.1 -60.3 -47.4 25.3 -0.1 -33.3 59 642 D I H X S+ 0 0 45 -4,-2.4 4,-2.9 1,-0.2 5,-0.3 0.935 109.1 53.4 -61.7 -44.8 23.2 -3.2 -33.9 60 643 D H H X S+ 0 0 86 -4,-2.5 4,-2.6 1,-0.2 5,-0.2 0.935 110.5 47.9 -53.9 -48.3 20.0 -1.1 -34.0 61 644 D S H X S+ 0 0 59 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.853 113.2 47.8 -60.2 -38.9 21.6 1.1 -36.7 62 645 D L H X S+ 0 0 85 -4,-2.1 4,-0.6 2,-0.2 -1,-0.2 0.897 112.5 47.5 -71.7 -42.7 22.8 -1.9 -38.7 63 646 D I H >X S+ 0 0 21 -4,-2.9 4,-1.5 2,-0.2 3,-0.7 0.921 114.8 46.2 -65.6 -45.4 19.4 -3.7 -38.6 64 647 D E H 3X S+ 0 0 126 -4,-2.6 4,-1.1 -5,-0.3 3,-0.4 0.924 108.2 55.8 -60.8 -46.8 17.5 -0.5 -39.6 65 648 D E H 3< S+ 0 0 131 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.667 111.3 46.3 -62.2 -16.8 20.0 0.2 -42.4 66 649 D S H X< S+ 0 0 58 -3,-0.7 3,-0.8 -4,-0.6 -1,-0.3 0.677 94.1 72.1 -97.0 -25.3 19.2 -3.4 -43.7 67 650 D Q H 3< S+ 0 0 91 -4,-1.5 2,-0.9 -3,-0.4 -2,-0.2 0.849 94.0 60.8 -53.7 -32.4 15.4 -2.9 -43.3 68 651 D N T 3< 0 0 119 -4,-1.1 -1,-0.3 1,-0.2 -3,-0.1 -0.330 360.0 360.0 -87.1 49.7 16.1 -0.7 -46.3 69 652 D Q < 0 0 132 -2,-0.9 -1,-0.2 -3,-0.8 -2,-0.1 0.751 360.0 360.0 -29.0 360.0 17.4 -3.8 -48.1