==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-JUL-08 2VZ4 . COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA; . SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; . AUTHOR M.G.ALLAN,J.STETEFELD,T.SCHIRMER . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7321.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 76.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 57 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A S 0 0 96 0, 0.0 2,-0.3 0, 0.0 40,-0.2 0.000 360.0 360.0 360.0 140.8 1.1 3.2 -23.3 2 3 A Y B -A 40 0A 54 38,-2.7 38,-2.7 1,-0.0 2,-0.1 -0.876 360.0-126.6-125.5 146.1 3.6 6.0 -22.7 3 4 A S > - 0 0 34 -2,-0.3 4,-2.4 36,-0.2 5,-0.3 -0.291 35.9-104.2 -77.7 169.7 5.4 7.6 -19.7 4 5 A V H > S+ 0 0 33 34,-0.2 4,-2.4 1,-0.2 5,-0.2 0.862 123.6 52.5 -61.4 -35.7 5.3 11.3 -18.9 5 6 A G H > S+ 0 0 43 2,-0.2 4,-2.4 3,-0.2 -1,-0.2 0.943 109.4 48.2 -65.1 -47.9 8.9 11.5 -20.3 6 7 A Q H > S+ 0 0 81 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.959 116.5 41.4 -55.2 -58.2 7.9 9.9 -23.6 7 8 A V H X S+ 0 0 0 -4,-2.4 4,-2.8 1,-0.3 5,-0.5 0.847 110.6 57.2 -62.6 -39.0 4.9 12.1 -24.1 8 9 A A H X>S+ 0 0 14 -4,-2.4 4,-1.7 -5,-0.3 5,-1.3 0.946 112.6 43.7 -54.7 -44.0 6.8 15.1 -22.9 9 10 A G H <5S+ 0 0 63 -4,-2.4 -2,-0.3 3,-0.2 -1,-0.2 0.854 115.7 46.0 -70.2 -39.6 9.2 14.3 -25.7 10 11 A F H <5S+ 0 0 116 -4,-2.3 -2,-0.2 1,-0.2 -3,-0.2 0.930 122.9 33.6 -68.0 -50.1 6.6 13.5 -28.4 11 12 A A H <5S- 0 0 21 -4,-2.8 -2,-0.2 2,-0.1 -3,-0.2 0.699 103.6-126.0 -81.8 -23.8 4.4 16.5 -27.8 12 13 A G T <5 + 0 0 68 -4,-1.7 2,-0.3 -5,-0.5 -3,-0.2 0.896 66.4 127.0 75.7 40.4 7.2 18.9 -26.9 13 14 A V < - 0 0 15 -5,-1.3 -1,-0.3 -6,-0.3 -2,-0.1 -0.919 64.9-101.1-122.8 152.4 5.7 19.9 -23.5 14 15 A T > - 0 0 86 -2,-0.3 4,-1.5 1,-0.1 3,-0.5 -0.367 28.7-118.8 -66.2 150.3 7.2 19.8 -20.1 15 16 A V H > S+ 0 0 48 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.897 116.3 61.2 -54.0 -41.1 6.3 16.9 -17.7 16 17 A R H > S+ 0 0 167 1,-0.2 4,-3.3 2,-0.2 -1,-0.2 0.871 99.8 53.9 -54.6 -41.3 4.8 19.6 -15.4 17 18 A T H > S+ 0 0 24 -3,-0.5 4,-2.8 1,-0.2 -1,-0.2 0.928 108.3 49.8 -54.9 -46.7 2.4 20.6 -18.1 18 19 A L H X S+ 0 0 0 -4,-1.5 4,-0.8 1,-0.2 -2,-0.2 0.760 112.4 47.5 -67.5 -28.5 1.3 16.9 -18.3 19 20 A H H X S+ 0 0 54 -4,-1.9 4,-2.7 2,-0.2 -2,-0.2 0.908 111.7 50.3 -72.9 -47.5 0.9 16.9 -14.5 20 21 A H H X S+ 0 0 82 -4,-3.3 4,-3.0 1,-0.2 5,-0.3 0.949 108.7 50.2 -57.7 -50.9 -1.1 20.2 -14.6 21 22 A Y H X>S+ 0 0 9 -4,-2.8 5,-3.1 1,-0.2 6,-1.7 0.833 112.0 50.3 -60.4 -31.9 -3.5 19.0 -17.3 22 23 A D H ><5S+ 0 0 18 -4,-0.8 3,-0.5 -5,-0.2 -1,-0.2 0.953 110.9 47.0 -66.1 -51.8 -4.1 15.9 -15.2 23 24 A D H 3<5S+ 0 0 123 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.886 114.0 49.3 -57.1 -41.6 -4.8 17.8 -12.0 24 25 A I H 3<5S- 0 0 76 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.766 112.7-120.8 -63.9 -30.8 -7.1 20.1 -14.0 25 26 A G T <<5S+ 0 0 50 -4,-1.0 -3,-0.2 -3,-0.5 3,-0.2 0.798 82.6 115.7 83.1 33.3 -8.9 17.2 -15.5 26 27 A L S - 0 0 30 -2,-0.3 4,-1.5 -40,-0.2 5,-0.1 -0.406 33.9 -99.3 -99.2 179.1 -2.5 6.0 -24.8 42 43 A D H > S+ 0 0 92 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.895 126.7 56.9 -66.2 -40.5 -2.7 6.9 -28.4 43 44 A A H > S+ 0 0 64 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.917 107.3 49.6 -50.1 -45.5 -6.1 8.3 -27.7 44 45 A D H > S+ 0 0 24 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.823 109.6 50.3 -68.1 -32.4 -4.4 10.5 -25.2 45 46 A L H X S+ 0 0 22 -4,-1.5 4,-1.9 2,-0.2 -2,-0.2 0.959 110.0 49.0 -70.2 -50.5 -1.7 11.6 -27.7 46 47 A D H X S+ 0 0 113 -4,-3.1 4,-1.4 1,-0.2 3,-0.4 0.933 113.4 49.4 -47.8 -51.4 -4.4 12.5 -30.4 47 48 A R H X S+ 0 0 64 -4,-2.4 4,-2.4 1,-0.2 -1,-0.2 0.887 105.8 55.3 -56.6 -47.4 -6.1 14.5 -27.6 48 49 A L H X S+ 0 0 1 -4,-2.3 4,-2.9 1,-0.2 -1,-0.2 0.852 103.3 56.3 -58.9 -34.2 -3.0 16.3 -26.6 49 50 A Q H X S+ 0 0 89 -4,-1.9 4,-2.0 -3,-0.4 -1,-0.2 0.928 108.8 46.9 -63.7 -43.1 -2.4 17.5 -30.2 50 51 A Q H X S+ 0 0 57 -4,-1.4 4,-2.4 2,-0.2 5,-0.3 0.933 112.6 49.2 -63.0 -49.4 -5.9 19.1 -30.1 51 52 A I H X S+ 0 0 0 -4,-2.4 4,-3.2 1,-0.2 -2,-0.2 0.964 113.3 46.3 -50.7 -57.5 -5.2 20.7 -26.8 52 53 A L H X S+ 0 0 29 -4,-2.9 4,-2.1 1,-0.2 -1,-0.2 0.798 110.3 56.0 -61.9 -29.6 -1.9 22.0 -27.9 53 54 A F H X S+ 0 0 55 -4,-2.0 4,-1.0 -5,-0.2 -1,-0.2 0.968 112.9 38.1 -63.3 -55.0 -3.5 23.3 -31.1 54 55 A Y H ><>S+ 0 0 0 -4,-2.4 5,-2.1 1,-0.2 3,-0.5 0.888 112.7 58.6 -68.0 -39.3 -6.2 25.4 -29.4 55 56 A R H ><5S+ 0 0 109 -4,-3.2 3,-2.5 -5,-0.3 -1,-0.2 0.951 103.0 53.3 -50.1 -52.8 -3.7 26.4 -26.8 56 57 A E H 3<5S+ 0 0 171 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.747 105.2 54.4 -58.8 -27.2 -1.4 27.9 -29.5 57 58 A L T <<5S- 0 0 44 -4,-1.0 -1,-0.3 -3,-0.5 -2,-0.2 0.047 126.3-103.7 -94.7 23.5 -4.4 29.9 -30.8 58 59 A G T < 5 + 0 0 64 -3,-2.5 -3,-0.2 1,-0.2 -2,-0.2 0.589 63.2 157.7 77.1 16.6 -4.8 31.3 -27.3 59 60 A F < - 0 0 47 -5,-2.1 -1,-0.2 1,-0.1 2,-0.1 -0.578 43.7-119.8 -75.4 129.0 -7.8 29.4 -25.9 60 61 A P >> - 0 0 60 0, 0.0 4,-2.6 0, 0.0 3,-0.8 -0.394 26.7-112.6 -66.9 150.4 -8.0 29.3 -22.1 61 62 A L H 3> S+ 0 0 45 1,-0.3 4,-1.7 2,-0.2 5,-0.1 0.738 115.3 57.3 -64.3 -24.7 -7.9 25.8 -20.8 62 63 A D H 3> S+ 0 0 117 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.923 112.3 42.6 -65.5 -42.3 -11.5 25.8 -19.5 63 64 A E H <> S+ 0 0 94 -3,-0.8 4,-3.2 2,-0.2 5,-0.2 0.874 110.0 56.1 -71.6 -39.3 -12.7 26.7 -23.0 64 65 A V H X S+ 0 0 0 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.889 107.4 50.6 -59.5 -38.1 -10.3 24.1 -24.5 65 66 A A H X S+ 0 0 28 -4,-1.7 4,-1.0 -5,-0.2 -2,-0.2 0.948 112.8 46.0 -60.6 -49.9 -12.0 21.5 -22.3 66 67 A A H >< S+ 0 0 51 -4,-1.9 3,-0.8 2,-0.2 4,-0.3 0.927 111.4 50.5 -60.6 -52.3 -15.5 22.6 -23.5 67 68 A L H >< S+ 0 0 29 -4,-3.2 3,-1.1 1,-0.2 -1,-0.2 0.929 112.9 46.8 -48.8 -52.2 -14.6 22.7 -27.2 68 69 A L H 3< S+ 0 0 26 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.631 111.9 50.8 -71.9 -15.7 -13.1 19.2 -27.0 69 70 A D T << 0 0 104 -4,-1.0 -1,-0.2 -3,-0.8 -2,-0.2 0.192 360.0 360.0-112.0 18.4 -16.0 17.7 -25.1 70 71 A D < 0 0 175 -3,-1.1 -2,-0.1 -4,-0.3 -1,-0.1 0.767 360.0 360.0 -94.0 360.0 -19.1 18.9 -27.2 71 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 72 77 A R 0 0 292 0, 0.0 2,-1.0 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 -17.7 -16.0 15.0 -35.7 73 78 A A >> + 0 0 76 1,-0.2 3,-0.6 2,-0.1 4,-0.5 -0.489 360.0 137.4 -93.6 61.8 -15.2 17.9 -38.1 74 79 A H H >> + 0 0 42 -2,-1.0 4,-2.4 1,-0.2 3,-0.6 0.810 63.0 79.9 -56.1 -38.4 -13.2 20.2 -35.8 75 80 A L H 3> S+ 0 0 124 -3,-0.4 4,-2.3 1,-0.3 5,-0.2 0.808 83.5 59.8 -45.4 -38.3 -11.0 20.6 -38.9 76 81 A R H <> S+ 0 0 178 -3,-0.6 4,-1.9 1,-0.2 -1,-0.3 0.974 111.9 37.0 -53.2 -57.1 -13.5 23.1 -40.3 77 82 A R H