==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 22-JUL-04 1W40 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR C.F.LEE,K.M.LEE,S.H.CHAN,M.D.ALLEN,M.BYCROFT,K.B.WONG . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5558.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 33.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 216 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 147.3 17.6 7.9 17.5 2 1 A V - 0 0 23 1,-0.1 2,-0.9 91,-0.1 92,-0.0 -0.499 360.0-143.3 -73.7 125.1 14.7 6.6 15.5 3 2 A D > - 0 0 90 -2,-0.3 4,-3.0 1,-0.2 5,-0.3 -0.781 12.7-164.3 -87.9 100.9 12.8 3.6 17.0 4 3 A F H > S+ 0 0 14 -2,-0.9 4,-2.5 1,-0.2 5,-0.3 0.936 84.2 46.4 -52.9 -58.9 11.9 1.6 13.9 5 4 A A H > S+ 0 0 48 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.883 118.8 41.7 -52.5 -46.7 9.3 -0.7 15.6 6 5 A F H > S+ 0 0 123 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.916 116.5 46.0 -69.6 -46.6 7.6 2.2 17.3 7 6 A E H X S+ 0 0 15 -4,-3.0 4,-1.5 2,-0.2 87,-0.4 0.788 109.8 54.9 -71.9 -27.8 7.6 4.7 14.5 8 7 A L H X S+ 0 0 0 -4,-2.5 4,-2.1 -5,-0.3 -1,-0.2 0.947 112.0 43.8 -66.7 -49.5 6.4 2.1 11.9 9 8 A R H X S+ 0 0 158 -4,-1.5 4,-2.6 -5,-0.3 -2,-0.2 0.893 110.2 55.5 -59.8 -42.9 3.4 1.4 14.1 10 9 A A H X S+ 0 0 16 -4,-2.3 4,-2.1 1,-0.2 81,-0.5 0.852 109.5 47.9 -60.3 -33.4 2.9 5.1 14.7 11 10 A A H X S+ 0 0 0 -4,-1.5 4,-1.6 2,-0.2 -1,-0.2 0.885 111.2 50.4 -72.4 -40.0 2.8 5.6 10.9 12 11 A Q H < S+ 0 0 40 -4,-2.1 5,-0.2 1,-0.2 -2,-0.2 0.895 119.2 37.1 -61.1 -41.6 0.3 2.7 10.6 13 12 A D H < S+ 0 0 111 -4,-2.6 -2,-0.2 -5,-0.1 -1,-0.2 0.775 130.7 23.2 -87.6 -32.3 -2.0 4.1 13.2 14 13 A T H < S+ 0 0 52 -4,-2.1 -3,-0.2 75,-0.2 -2,-0.2 0.509 125.7 30.0-114.7 -12.5 -1.9 7.9 12.6 15 14 A G S < S- 0 0 10 -4,-1.6 2,-0.4 -5,-0.3 -4,-0.1 -0.083 91.8 -79.4-119.5-142.4 -0.8 8.2 9.0 16 15 A K E +A 88 0A 116 72,-3.1 71,-2.5 -2,-0.1 72,-2.2 -0.975 40.7 168.5-137.9 126.5 -1.2 6.1 5.8 17 16 A I E -A 86 0A 21 -2,-0.4 2,-0.4 69,-0.2 69,-0.2 -0.958 19.8-151.7-127.9 151.0 0.7 3.0 4.7 18 17 A V E -A 85 0A 10 67,-2.1 67,-2.6 -2,-0.3 2,-0.3 -0.970 21.6-143.5-118.3 140.4 0.1 0.5 1.9 19 18 A M E +A 84 0A 33 -2,-0.4 4,-0.4 65,-0.2 65,-0.2 -0.792 48.9 33.9-112.3 146.5 1.4 -3.1 2.4 20 19 A G S > S- 0 0 25 63,-2.9 4,-2.2 -2,-0.3 5,-0.1 0.022 84.6 -82.8 97.6 155.6 3.0 -5.7 0.1 21 20 A A H > S+ 0 0 21 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.877 121.2 56.9 -60.7 -42.1 5.3 -5.6 -2.9 22 21 A R H > S+ 0 0 172 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.935 113.5 37.3 -58.1 -55.4 2.5 -4.9 -5.4 23 22 A K H > S+ 0 0 81 -4,-0.4 4,-2.6 2,-0.2 5,-0.2 0.881 115.6 55.8 -61.5 -43.1 1.1 -1.7 -3.8 24 23 A S H X S+ 0 0 0 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.925 110.8 43.4 -57.4 -48.6 4.7 -0.6 -2.8 25 24 A I H X S+ 0 0 24 -4,-2.9 4,-3.1 2,-0.2 -2,-0.2 0.924 113.1 52.7 -63.3 -46.6 5.9 -0.8 -6.5 26 25 A Q H X S+ 0 0 82 -4,-2.2 4,-1.9 -5,-0.3 -2,-0.2 0.882 112.2 44.2 -55.7 -44.6 2.7 0.9 -7.7 27 26 A Y H <>S+ 0 0 61 -4,-2.6 5,-2.9 2,-0.2 6,-0.6 0.822 112.8 52.5 -73.1 -32.8 3.1 3.8 -5.3 28 27 A A H ><5S+ 0 0 0 -4,-2.0 3,-1.0 -5,-0.2 -2,-0.2 0.935 109.4 50.4 -60.7 -49.1 6.8 4.0 -6.1 29 28 A K H 3<5S+ 0 0 126 -4,-3.1 -2,-0.2 1,-0.2 -1,-0.2 0.888 114.3 42.6 -54.9 -47.0 5.9 4.2 -9.8 30 29 A M T 3<5S- 0 0 110 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.432 110.6-118.6 -86.3 -0.8 3.3 7.0 -9.4 31 30 A G T < 5S+ 0 0 41 -3,-1.0 -3,-0.2 -4,-0.4 -2,-0.1 0.816 74.4 131.0 68.0 33.0 5.6 9.0 -7.0 32 31 A G < + 0 0 26 -5,-2.9 2,-0.3 -6,-0.2 -4,-0.2 0.231 44.9 75.4-106.4 10.8 3.0 8.6 -4.2 33 32 A A - 0 0 9 -6,-0.6 54,-0.3 -5,-0.1 3,-0.1 -0.878 57.2-155.2-120.3 156.1 5.0 7.4 -1.3 34 33 A K S S+ 0 0 110 52,-3.6 2,-0.3 1,-0.4 53,-0.2 0.601 84.8 6.7 -99.2 -21.7 7.4 9.2 1.0 35 34 A L E -B 86 0A 0 51,-1.1 51,-3.4 24,-0.1 2,-0.5 -0.937 61.0-149.5-160.8 140.3 9.4 6.1 2.0 36 35 A I E -Bc 85 61A 0 24,-2.1 26,-2.6 -2,-0.3 2,-0.5 -0.959 12.6-159.2-113.6 129.7 9.5 2.5 0.9 37 36 A I E -Bc 84 62A 0 47,-3.0 47,-2.4 -2,-0.5 2,-0.4 -0.951 9.2-169.5-107.3 128.5 10.5 -0.2 3.5 38 37 A V E -Bc 83 63A 1 24,-2.4 26,-3.3 -2,-0.5 45,-0.2 -0.976 21.7-122.8-121.8 132.3 11.8 -3.5 2.2 39 38 A A E > - c 0 64A 0 43,-2.9 3,-2.1 -2,-0.4 28,-0.2 -0.457 26.9-117.7 -66.9 145.0 12.4 -6.7 4.2 40 39 A R T 3 S+ 0 0 131 26,-1.8 27,-0.2 24,-1.1 -1,-0.1 0.755 114.5 45.6 -54.4 -32.8 16.0 -8.1 4.1 41 40 A N T 3 S+ 0 0 83 25,-0.4 -1,-0.3 2,-0.0 26,-0.1 0.198 79.1 139.8-102.0 13.8 14.7 -11.3 2.5 42 41 A A S < S- 0 0 5 -3,-2.1 5,-0.1 40,-0.2 -4,-0.0 -0.279 71.7 -84.6 -50.4 140.9 12.4 -9.7 -0.1 43 42 A R >> - 0 0 146 1,-0.1 4,-2.1 2,-0.1 3,-1.5 -0.280 41.2-118.1 -55.6 131.8 12.7 -11.5 -3.4 44 43 A P H 3> S+ 0 0 83 0, 0.0 4,-2.0 0, 0.0 -1,-0.1 0.782 112.4 47.7 -45.0 -40.7 15.7 -10.2 -5.4 45 44 A D H 3> S+ 0 0 74 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.763 110.5 52.5 -76.9 -24.9 13.6 -8.9 -8.3 46 45 A I H <> S+ 0 0 26 -3,-1.5 4,-2.5 2,-0.2 5,-0.2 0.926 110.4 47.5 -71.8 -49.2 11.1 -7.2 -6.0 47 46 A K H X S+ 0 0 42 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.925 114.1 48.1 -49.3 -50.5 13.9 -5.4 -4.2 48 47 A E H X S+ 0 0 129 -4,-2.0 4,-2.0 -5,-0.3 -2,-0.2 0.883 111.0 49.8 -68.6 -37.8 15.4 -4.4 -7.5 49 48 A D H X S+ 0 0 71 -4,-2.0 4,-2.4 2,-0.2 5,-0.3 0.920 113.4 46.4 -60.0 -47.3 12.0 -3.1 -8.9 50 49 A I H X S+ 0 0 0 -4,-2.5 4,-2.6 1,-0.2 5,-0.3 0.947 112.0 50.1 -62.0 -49.8 11.4 -1.0 -5.7 51 50 A E H X S+ 0 0 94 -4,-2.7 4,-1.8 -5,-0.2 -1,-0.2 0.882 113.0 48.2 -57.4 -41.6 14.9 0.4 -5.8 52 51 A Y H X S+ 0 0 126 -4,-2.0 4,-1.9 2,-0.2 -2,-0.2 0.975 114.4 41.6 -62.6 -59.2 14.5 1.4 -9.5 53 52 A Y H X S+ 0 0 55 -4,-2.4 4,-1.0 1,-0.2 -2,-0.2 0.843 115.6 51.5 -61.2 -35.5 11.1 3.1 -9.3 54 53 A A H X>S+ 0 0 1 -4,-2.6 5,-2.8 -5,-0.3 4,-1.4 0.898 108.3 51.5 -67.9 -41.3 12.0 4.8 -6.1 55 54 A R H <5S+ 0 0 226 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.830 105.1 57.0 -63.6 -36.2 15.2 6.2 -7.6 56 55 A L H <5S+ 0 0 117 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.821 117.7 33.3 -59.2 -35.8 13.2 7.5 -10.6 57 56 A S H <5S- 0 0 59 -4,-1.0 -2,-0.2 -3,-0.4 -1,-0.2 0.538 110.8-112.1-101.9 -12.0 11.0 9.6 -8.2 58 57 A G T <5 + 0 0 65 -4,-1.4 -3,-0.2 1,-0.3 -4,-0.1 0.823 63.7 150.8 78.2 32.7 13.5 10.5 -5.5 59 58 A I < - 0 0 16 -5,-2.8 -1,-0.3 -6,-0.1 -24,-0.1 -0.883 45.8-122.8 -97.4 123.8 11.8 8.3 -2.9 60 59 A P - 0 0 48 0, 0.0 -24,-2.1 0, 0.0 2,-0.4 -0.370 19.7-150.3 -65.0 141.1 14.1 6.9 -0.2 61 60 A V E -c 36 0A 50 -26,-0.2 2,-0.4 36,-0.1 -24,-0.2 -0.950 8.9-166.4-110.6 135.3 14.3 3.1 0.3 62 61 A Y E -c 37 0A 51 -26,-2.6 -24,-2.4 -2,-0.4 2,-0.6 -0.991 13.7-141.4-121.0 129.6 15.1 1.7 3.7 63 62 A E E -c 38 0A 98 -2,-0.4 2,-0.3 -26,-0.2 -24,-0.2 -0.823 19.3-132.8 -91.3 120.8 16.0 -2.0 4.1 64 63 A F E -c 39 0A 2 -26,-3.3 2,-2.2 -2,-0.6 -24,-1.1 -0.593 12.3-131.1 -75.7 130.8 14.5 -3.5 7.3 65 64 A E S S+ 0 0 107 -2,-0.3 2,-0.3 -26,-0.1 -1,-0.1 -0.389 81.7 57.0 -81.1 59.7 17.1 -5.5 9.3 66 65 A G S S- 0 0 1 -2,-2.2 -26,-1.8 3,-0.0 -25,-0.4 -0.961 89.1 -78.9-176.2 168.5 14.8 -8.5 9.6 67 66 A T > - 0 0 48 -2,-0.3 4,-2.1 -28,-0.2 5,-0.2 -0.289 43.1-104.4 -80.7 167.3 12.8 -11.0 7.7 68 67 A S H > S+ 0 0 8 1,-0.2 13,-2.0 2,-0.2 4,-2.0 0.772 122.8 59.9 -58.3 -29.0 9.4 -10.6 6.0 69 68 A V H > S+ 0 0 88 11,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.967 107.1 43.0 -62.4 -55.0 8.1 -12.7 9.0 70 69 A E H > S+ 0 0 96 1,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.851 113.1 53.0 -59.8 -37.2 9.3 -10.1 11.6 71 70 A L H X S+ 0 0 0 -4,-2.1 4,-1.8 2,-0.2 -1,-0.2 0.918 109.2 48.8 -66.4 -44.9 8.1 -7.2 9.5 72 71 A G H <>S+ 0 0 0 -4,-2.0 5,-2.9 2,-0.2 4,-0.3 0.923 110.8 50.9 -54.8 -49.5 4.6 -8.7 9.2 73 72 A T H ><5S+ 0 0 96 -4,-2.3 3,-1.1 1,-0.2 -2,-0.2 0.883 108.5 51.9 -57.9 -41.2 4.6 -9.3 13.0 74 73 A L H 3<5S+ 0 0 40 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.872 110.4 48.8 -61.7 -38.0 5.6 -5.6 13.5 75 74 A L T 3<5S- 0 0 4 -4,-1.8 -1,-0.3 2,-0.1 -2,-0.2 0.372 120.4-112.6 -84.0 1.1 2.7 -4.6 11.3 76 75 A G T < 5S+ 0 0 65 -3,-1.1 -3,-0.2 1,-0.3 -2,-0.1 0.656 72.8 134.9 77.3 18.9 0.4 -6.9 13.3 77 76 A R < - 0 0 127 -5,-2.9 -1,-0.3 2,-0.2 -2,-0.1 -0.821 57.0-142.2-101.4 138.7 -0.2 -9.3 10.4 78 77 A P S S+ 0 0 115 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 0.189 84.4 64.3 -82.2 19.8 -0.1 -13.1 10.9 79 78 A H S S- 0 0 137 -7,-0.1 -2,-0.2 -11,-0.1 2,-0.1 -0.854 95.7 -80.2-135.1 166.6 1.6 -13.3 7.4 80 79 A T - 0 0 89 -2,-0.3 2,-0.4 -8,-0.1 -11,-0.2 -0.366 32.0-163.0 -66.5 146.5 4.8 -12.2 5.8 81 80 A V + 0 0 8 -13,-2.0 -10,-0.2 1,-0.1 -9,-0.2 -0.962 9.3 179.6-128.9 115.9 5.2 -8.6 4.5 82 81 A S - 0 0 32 -2,-0.4 -43,-2.9 1,-0.3 2,-0.3 0.724 68.3 -1.5 -87.7 -26.2 8.1 -8.2 2.1 83 82 A A E - B 0 38A 0 -45,-0.2 -63,-2.9 -15,-0.1 2,-0.3 -0.984 57.7-176.5-158.6 158.2 7.7 -4.5 1.5 84 83 A L E -AB 19 37A 0 -47,-2.4 -47,-3.0 -2,-0.3 2,-0.4 -0.973 17.0-136.3-152.8 162.1 5.5 -1.5 2.4 85 84 A A E -AB 18 36A 0 -67,-2.6 -67,-2.1 -2,-0.3 2,-0.7 -0.983 10.6-140.2-125.7 132.6 5.2 2.2 1.5 86 85 A V E +AB 17 35A 0 -51,-3.4 -52,-3.6 -2,-0.4 -51,-1.1 -0.843 26.1 169.3 -89.1 113.2 4.7 5.1 3.8 87 86 A V E S+ 0 0 31 -71,-2.5 -70,-0.2 -2,-0.7 -1,-0.2 0.858 75.5 11.5 -89.0 -45.9 2.3 7.5 2.1 88 87 A D E -A 16 0A 77 -72,-2.2 -72,-3.1 -77,-0.1 -1,-0.4 -0.988 62.5-157.9-136.2 122.2 1.6 9.7 5.1 89 88 A P > - 0 0 22 0, 0.0 3,-2.3 0, 0.0 2,-0.3 0.734 23.2-173.6 -70.7 -22.6 3.7 9.5 8.3 90 89 A G T 3 S- 0 0 36 1,-0.3 -75,-0.2 -76,-0.1 -79,-0.1 -0.513 73.1 -17.6 62.5-122.6 1.0 11.1 10.5 91 90 A E T 3 S+ 0 0 162 -81,-0.5 -1,-0.3 -2,-0.3 -80,-0.1 0.421 113.5 115.8 -91.1 -1.5 2.6 11.6 13.9 92 91 A S < - 0 0 13 -3,-2.3 3,-0.2 -82,-0.3 -85,-0.1 -0.367 57.6-154.4 -71.6 147.6 5.4 9.1 13.0 93 92 A R > + 0 0 135 1,-0.1 3,-1.8 -90,-0.1 4,-0.2 0.181 61.8 118.3 -96.9 13.2 9.1 10.2 12.8 94 93 A I G > + 0 0 0 -87,-0.4 3,-1.3 1,-0.3 -1,-0.1 0.665 57.7 70.4 -58.1 -23.5 9.7 7.2 10.4 95 94 A L G > S+ 0 0 55 1,-0.3 3,-2.4 -3,-0.2 -1,-0.3 0.733 78.5 78.1 -72.5 -21.7 10.8 9.4 7.4 96 95 A A G < S+ 0 0 72 -3,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.761 79.8 72.0 -53.4 -28.3 14.0 10.3 9.2 97 96 A L G < 0 0 43 -3,-1.3 -1,-0.3 -4,-0.2 -2,-0.2 0.565 360.0 360.0 -65.9 -11.3 15.3 6.9 8.1 98 97 A G < 0 0 68 -3,-2.4 -36,-0.1 -38,-0.1 -63,-0.1 -0.372 360.0 360.0 -74.7 360.0 15.4 8.2 4.5