==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 24-MAY-04 1WE8 . COMPND 2 MOLECULE: TUDOR AND KH DOMAIN CONTAINING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,F.HAYASHI, . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7926.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 14.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 33.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 140 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 126.6 -12.9 6.7 12.3 2 2 A S + 0 0 125 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.512 360.0 86.3-136.4 -56.6 -12.2 8.5 9.1 3 3 A S + 0 0 131 2,-0.0 -1,-0.1 1,-0.0 0, 0.0 -0.143 51.4 102.6 -53.5 148.2 -12.1 12.2 9.5 4 4 A G + 0 0 73 -3,-0.1 2,-0.3 1,-0.0 -1,-0.0 0.400 34.8 163.5 133.6 84.6 -8.7 13.6 10.5 5 5 A S + 0 0 124 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.945 10.1 130.8-127.2 147.6 -6.3 15.3 8.1 6 6 A S + 0 0 129 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 -0.945 11.7 162.9 179.0 163.1 -3.3 17.6 8.6 7 7 A G - 0 0 43 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.422 7.7-176.8 164.2 116.9 0.3 18.2 7.6 8 8 A I + 0 0 148 -2,-0.1 2,-0.3 2,-0.0 62,-0.1 -0.912 12.1 153.7-126.6 153.7 2.7 21.1 7.9 9 9 A L - 0 0 71 -2,-0.3 -2,-0.0 1,-0.0 60,-0.0 -0.897 50.7-104.6-158.6-174.4 6.3 21.7 6.7 10 10 A T S S- 0 0 99 -2,-0.3 -1,-0.0 0, 0.0 -2,-0.0 0.643 91.3 -58.1 -97.2 -19.8 8.9 24.3 5.7 11 11 A E S S- 0 0 157 -3,-0.0 58,-0.0 0, 0.0 -2,-0.0 0.130 125.8 -1.5 164.3 -24.7 8.7 23.4 2.0 12 12 A N S S+ 0 0 104 2,-0.1 -3,-0.0 58,-0.0 59,-0.0 0.164 77.3 171.1-174.9 27.7 9.6 19.8 1.7 13 13 A T - 0 0 50 56,-0.1 57,-1.4 1,-0.1 0, 0.0 -0.159 37.5-108.2 -51.9 141.3 10.3 18.5 5.2 14 14 A P E -A 69 0A 101 0, 0.0 2,-0.3 0, 0.0 55,-0.2 -0.221 34.7-163.2 -69.7 161.7 10.8 14.7 5.4 15 15 A V E -A 68 0A 35 53,-2.3 53,-1.8 2,-0.0 2,-0.4 -0.985 13.7-152.3-147.1 155.6 8.2 12.4 7.1 16 16 A F E +A 67 0A 139 -2,-0.3 2,-0.3 51,-0.2 51,-0.2 -0.922 23.8 164.0-135.8 109.7 8.0 8.9 8.5 17 17 A E E -A 66 0A 76 49,-3.3 49,-2.8 -2,-0.4 2,-0.4 -0.849 20.8-149.0-123.2 159.3 4.7 7.0 8.5 18 18 A Q E -A 65 0A 80 -2,-0.3 2,-0.5 47,-0.2 47,-0.2 -0.992 5.2-166.3-132.3 136.4 3.7 3.3 9.0 19 19 A L E -A 64 0A 36 45,-2.2 45,-3.0 -2,-0.4 2,-0.5 -0.964 14.5-143.9-126.2 116.6 0.8 1.4 7.5 20 20 A S E +A 63 0A 94 -2,-0.5 43,-0.3 43,-0.3 -2,-0.0 -0.668 25.1 179.9 -81.2 120.6 -0.2 -2.1 8.9 21 21 A V E -A 62 0A 5 41,-1.7 41,-2.6 -2,-0.5 -2,-0.0 -0.951 26.7-113.3-125.2 143.0 -1.4 -4.4 6.1 22 22 A P E >> -A 61 0A 41 0, 0.0 4,-2.8 0, 0.0 3,-1.4 -0.299 26.7-116.0 -69.8 154.2 -2.6 -8.0 6.3 23 23 A Q T 34 S+ 0 0 64 37,-1.1 4,-0.4 1,-0.3 38,-0.1 0.602 116.7 61.5 -65.9 -9.5 -0.7 -10.8 4.6 24 24 A R T 34 S+ 0 0 132 36,-0.2 -1,-0.3 2,-0.1 4,-0.1 0.700 114.1 31.0 -88.5 -22.6 -3.7 -11.2 2.4 25 25 A S T X> S+ 0 0 1 -3,-1.4 4,-2.1 2,-0.1 3,-1.7 0.706 103.3 74.6-104.4 -30.3 -3.4 -7.7 0.9 26 26 A V H 3X>S+ 0 0 18 -4,-2.8 4,-2.9 1,-0.3 5,-0.6 0.815 91.0 61.4 -53.0 -31.8 0.4 -7.3 1.1 27 27 A G H 3>5S+ 0 0 36 -4,-0.4 4,-0.5 1,-0.2 -1,-0.3 0.812 109.3 39.9 -66.3 -30.1 0.6 -9.7 -1.9 28 28 A R H <45S+ 0 0 89 -3,-1.7 -2,-0.2 2,-0.1 -1,-0.2 0.752 118.8 47.0 -88.7 -28.4 -1.4 -7.2 -4.0 29 29 A I H <5S+ 0 0 0 -4,-2.1 -2,-0.2 2,-0.1 -3,-0.2 0.936 124.3 29.5 -77.9 -50.3 0.3 -4.1 -2.6 30 30 A I H X5S- 0 0 33 -4,-2.9 7,-1.8 1,-0.2 6,-1.6 0.798 106.4-145.9 -79.6 -30.5 3.9 -5.4 -2.9 31 31 A G T << - 0 0 9 -5,-0.6 -1,-0.2 -4,-0.5 -2,-0.1 -0.552 45.2 -36.7 98.2-165.2 3.1 -7.6 -5.9 32 32 A R T 4 S- 0 0 221 -2,-0.2 -1,-0.2 1,-0.2 -4,-0.1 0.861 137.0 -17.5 -64.9 -36.3 4.6 -11.0 -6.9 33 33 A G T 4 S- 0 0 69 -3,-0.3 -2,-0.2 -6,-0.1 -1,-0.2 0.154 119.0 -60.5-158.4 23.7 8.0 -9.9 -5.6 34 34 A G S >X S+ 0 0 6 -4,-0.6 4,-2.2 -7,-0.2 3,-0.5 0.125 97.0 121.6 113.7 -19.5 8.0 -6.2 -5.3 35 35 A E H 3> S+ 0 0 99 1,-0.3 4,-0.7 2,-0.2 -4,-0.2 0.773 86.0 43.2 -45.9 -27.6 7.3 -5.3 -9.0 36 36 A T H 3> S+ 0 0 16 -6,-1.6 4,-1.2 2,-0.2 -1,-0.3 0.799 111.0 51.9 -88.8 -33.5 4.3 -3.5 -7.5 37 37 A I H <> S+ 0 0 27 -7,-1.8 4,-1.1 -3,-0.5 -2,-0.2 0.638 108.4 54.4 -77.1 -14.6 6.1 -1.9 -4.6 38 38 A R H X S+ 0 0 192 -4,-2.2 4,-1.0 -8,-0.3 -1,-0.2 0.824 106.4 48.5 -86.5 -35.8 8.7 -0.6 -7.1 39 39 A S H X S+ 0 0 66 -4,-0.7 4,-1.0 -5,-0.3 -2,-0.2 0.790 113.0 49.5 -74.2 -28.6 6.2 1.2 -9.4 40 40 A I H X>S+ 0 0 8 -4,-1.2 4,-2.5 2,-0.2 5,-0.6 0.913 106.2 53.3 -76.1 -45.2 4.5 2.8 -6.4 41 41 A C H X5S+ 0 0 41 -4,-1.1 4,-1.4 1,-0.2 -2,-0.2 0.817 115.7 42.2 -59.5 -31.0 7.7 4.1 -4.8 42 42 A K H <5S+ 0 0 165 -4,-1.0 -1,-0.2 2,-0.2 -2,-0.2 0.725 113.3 52.5 -87.3 -24.6 8.5 5.8 -8.1 43 43 A A H <5S+ 0 0 76 -4,-1.0 -2,-0.2 -5,-0.1 -3,-0.2 0.789 127.5 21.4 -80.2 -29.8 4.9 6.9 -8.7 44 44 A S H <5S- 0 0 16 -4,-2.5 -3,-0.2 2,-0.2 -2,-0.2 0.736 94.1-134.8-106.0 -35.9 4.7 8.6 -5.3 45 45 A G << + 0 0 34 -4,-1.4 2,-0.4 -5,-0.6 -4,-0.1 0.344 62.0 127.8 94.9 -6.3 8.4 9.1 -4.5 46 46 A A - 0 0 0 -6,-0.3 2,-0.4 26,-0.2 -1,-0.3 -0.682 66.1-114.1 -87.9 136.2 8.0 7.9 -0.9 47 47 A K E -B 67 0A 135 20,-1.8 20,-1.8 -2,-0.4 2,-0.5 -0.550 34.8-166.6 -71.3 119.9 10.2 5.1 0.3 48 48 A I E +B 66 0A 14 -2,-0.4 2,-0.3 18,-0.2 18,-0.2 -0.932 14.2 161.5-114.0 130.3 8.2 2.0 1.0 49 49 A T E -B 65 0A 68 16,-1.6 16,-2.9 -2,-0.5 2,-0.3 -0.926 31.7-118.1-141.1 164.9 9.6 -1.0 3.0 50 50 A C E -B 64 0A 42 -2,-0.3 14,-0.2 14,-0.2 12,-0.0 -0.806 45.6 -81.9-107.6 148.2 8.3 -4.0 4.9 51 51 A D + 0 0 39 12,-2.6 -1,-0.2 -2,-0.3 14,-0.0 0.114 43.9 173.8 -38.7 157.6 8.8 -4.8 8.5 52 52 A K + 0 0 158 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.521 64.9 70.7-136.6 -50.8 12.1 -6.4 9.5 53 53 A E S S+ 0 0 179 2,-0.0 2,-0.2 3,-0.0 -2,-0.1 0.806 98.6 67.0 -43.7 -33.2 12.4 -6.7 13.3 54 54 A S S S- 0 0 34 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.576 101.3-108.1 -92.0 155.5 9.8 -9.4 12.9 55 55 A E - 0 0 153 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.865 39.7-154.9 -46.9 -41.4 10.3 -12.8 11.2 56 56 A G + 0 0 21 1,-0.0 -1,-0.1 0, 0.0 6,-0.0 0.852 52.8 122.7 65.9 34.7 8.1 -11.5 8.4 57 57 A T S S- 0 0 101 0, 0.0 -3,-0.0 0, 0.0 -1,-0.0 0.933 90.5 -62.6 -89.1 -67.9 7.2 -15.0 7.4 58 58 A L S S+ 0 0 110 3,-0.1 4,-0.1 4,-0.0 -35,-0.1 0.162 74.3 148.5-175.8 29.0 3.4 -15.2 7.6 59 59 A L S S- 0 0 77 2,-0.1 3,-0.1 1,-0.1 0, 0.0 0.890 75.6 -73.8 -36.2 -87.8 2.4 -14.6 11.2 60 60 A L S S+ 0 0 143 1,-0.4 -37,-1.1 0, 0.0 2,-0.3 0.420 105.0 18.2-146.4 -48.6 -1.0 -12.9 10.7 61 61 A S E -A 22 0A 69 -39,-0.2 -1,-0.4 -38,-0.1 2,-0.2 -0.982 63.7-141.0-137.3 147.7 -0.6 -9.3 9.4 62 62 A R E -A 21 0A 51 -41,-2.6 -41,-1.7 -2,-0.3 2,-0.4 -0.557 10.5-142.9-102.5 168.9 2.3 -7.4 7.8 63 63 A L E -A 20 0A 41 -43,-0.3 -12,-2.6 -2,-0.2 2,-0.3 -0.999 8.1-158.6-137.3 135.1 3.5 -3.8 8.2 64 64 A I E -AB 19 50A 1 -45,-3.0 -45,-2.2 -2,-0.4 2,-0.5 -0.797 8.2-143.9-112.0 154.6 4.8 -1.3 5.7 65 65 A K E -AB 18 49A 49 -16,-2.9 -16,-1.6 -2,-0.3 2,-0.5 -0.968 12.4-167.6-122.5 120.3 6.9 1.8 6.3 66 66 A I E +AB 17 48A 0 -49,-2.8 -49,-3.3 -2,-0.5 2,-0.3 -0.909 13.0 169.1-110.0 130.6 6.5 4.9 4.2 67 67 A S E +AB 16 47A 28 -20,-1.8 -20,-1.8 -2,-0.5 2,-0.3 -0.903 23.3 75.2-135.1 163.0 9.0 7.8 4.2 68 68 A G E S-A 15 0A 19 -53,-1.8 -53,-2.3 -2,-0.3 2,-0.2 -0.915 78.2 -18.9 135.7-162.7 9.7 10.9 2.2 69 69 A T E >>> -A 14 0A 32 -2,-0.3 3,-1.8 -55,-0.2 4,-1.2 -0.536 66.1-104.6 -83.0 148.2 8.3 14.5 1.8 70 70 A Q H 3>5S+ 0 0 46 -57,-1.4 4,-0.5 1,-0.3 5,-0.1 0.744 124.6 60.7 -40.1 -25.6 4.8 15.4 2.9 71 71 A K H 3>5S+ 0 0 178 3,-0.1 4,-1.3 2,-0.1 -1,-0.3 0.922 116.8 25.8 -71.0 -45.6 4.2 15.3 -0.8 72 72 A E H <>>S+ 0 0 47 -3,-1.8 4,-2.6 2,-0.2 5,-0.6 0.968 116.1 56.9 -81.2 -66.9 5.1 11.6 -1.2 73 73 A V H X5S+ 0 0 0 -4,-1.2 4,-0.6 1,-0.3 -3,-0.2 0.760 116.9 42.9 -35.8 -30.5 4.5 10.1 2.2 74 74 A A H XX5S+ 0 0 44 -4,-1.3 4,-1.6 -3,-0.5 3,-1.3 0.956 114.4 51.1 -70.4 -52.5 0.6 10.4 -2.0 76 76 A A H 3X5S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.3 5,-0.3 0.894 102.0 62.5 -51.9 -44.0 2.2 7.0 -1.6 77 77 A K H 3XX S+ 0 0 0 -4,-2.6 4,-1.3 1,-0.3 3,-0.7 0.862 109.2 48.2 -45.9 -41.6 -0.6 1.5 -1.2 81 81 A L H 3X S+ 0 0 92 -4,-1.1 4,-2.5 -5,-0.3 5,-0.4 0.908 96.4 69.1 -67.6 -43.0 -4.3 1.5 -0.2 82 82 A E H 3X S+ 0 0 99 -4,-2.0 4,-0.6 1,-0.3 -1,-0.2 0.758 107.1 42.6 -47.1 -25.4 -5.4 1.3 -3.9 83 83 A K H X S+ 0 0 117 -4,-0.6 4,-3.2 -5,-0.4 3,-0.5 0.968 111.8 38.1 -57.9 -57.4 -8.3 -4.5 -4.7 87 87 A D H 3X S+ 0 0 11 -4,-2.1 4,-2.3 1,-0.2 5,-0.2 0.849 108.2 66.5 -63.4 -34.7 -7.3 -7.7 -3.1 88 88 A E H 3< S+ 0 0 92 -4,-1.5 -1,-0.2 -5,-0.3 4,-0.2 0.887 115.9 26.8 -53.7 -42.0 -10.0 -7.1 -0.4 89 89 A E H XX S+ 0 0 121 -4,-1.6 4,-3.0 -3,-0.5 3,-1.4 0.860 113.6 64.3 -88.4 -42.4 -12.6 -7.5 -3.1 90 90 A L H 3X S+ 0 0 60 -4,-3.2 4,-0.7 1,-0.3 -2,-0.2 0.845 106.0 47.5 -49.7 -36.7 -10.7 -9.8 -5.4 91 91 A R H 3X S+ 0 0 139 -4,-2.3 4,-1.2 -5,-0.2 -1,-0.3 0.706 113.5 48.4 -78.4 -20.9 -10.7 -12.4 -2.7 92 92 A K H <> S+ 0 0 136 -3,-1.4 4,-2.6 -5,-0.2 -2,-0.2 0.787 103.6 58.9 -87.6 -31.7 -14.4 -11.8 -2.1 93 93 A R H < S+ 0 0 188 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.751 114.7 38.4 -68.7 -23.8 -15.4 -12.1 -5.8 94 94 A I H < S+ 0 0 125 -4,-0.7 -1,-0.2 -5,-0.3 -2,-0.2 0.789 124.7 37.6 -94.7 -35.2 -13.9 -15.6 -5.8 95 95 A A H < S- 0 0 57 -4,-1.2 -3,-0.2 -5,-0.1 -2,-0.2 0.924 78.6-179.0 -81.6 -50.0 -15.1 -16.7 -2.4 96 96 A H < - 0 0 128 -4,-2.6 2,-1.0 1,-0.2 -3,-0.1 0.927 12.8-158.0 44.4 91.3 -18.5 -15.0 -2.4 97 97 A S - 0 0 105 1,-0.1 -1,-0.2 -5,-0.1 3,-0.1 -0.690 64.7 -59.3-100.9 80.8 -19.9 -15.9 1.1 98 98 A A S S+ 0 0 108 -2,-1.0 2,-0.3 1,-0.2 -1,-0.1 0.873 119.7 88.5 49.1 41.8 -23.7 -15.5 0.6 99 99 A S + 0 0 98 -7,-0.1 -1,-0.2 1,-0.0 0, 0.0 -0.960 27.7 133.6-156.7 170.1 -23.0 -11.9 -0.3 100 100 A G - 0 0 53 -2,-0.3 2,-1.6 -3,-0.1 -1,-0.0 0.405 32.4-152.2 139.1 73.5 -22.3 -9.5 -3.2 101 101 A P + 0 0 125 0, 0.0 2,-0.4 0, 0.0 3,-0.2 -0.493 35.9 151.6 -69.8 88.5 -24.3 -6.3 -3.6 102 102 A S + 0 0 108 -2,-1.6 0, 0.0 1,-0.1 0, 0.0 -0.712 26.8 106.8-123.7 80.0 -24.1 -5.8 -7.4 103 103 A S 0 0 125 -2,-0.4 -1,-0.1 1,-0.2 0, 0.0 0.605 360.0 360.0-122.5 -30.9 -27.1 -3.9 -8.5 104 104 A G 0 0 123 -3,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.834 360.0 360.0-100.4 360.0 -25.8 -0.5 -9.3