==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-MAY-04 1WE9 . COMPND 2 MOLECULE: PHD FINGER FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4952.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 26 40.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 122 0, 0.0 14,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 98.6 4.6 21.1 7.1 2 2 A S + 0 0 127 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.576 360.0 107.6-116.2 -21.5 3.0 24.3 8.4 3 3 A S - 0 0 89 1,-0.1 3,-0.0 2,-0.0 0, 0.0 -0.384 60.6-146.2 -63.1 131.8 -0.5 23.8 7.0 4 4 A G S S+ 0 0 78 1,-0.1 2,-0.2 -2,-0.1 -1,-0.1 0.974 77.8 33.1 -61.9 -87.6 -3.0 23.0 9.8 5 5 A S S S+ 0 0 122 3,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.535 80.7 128.0 -75.8 135.8 -5.6 20.7 8.3 6 6 A S - 0 0 72 -2,-0.2 0, 0.0 -3,-0.0 0, 0.0 -0.975 60.4 -54.4-174.2 168.4 -4.4 18.3 5.6 7 7 A G - 0 0 14 -2,-0.3 2,-0.4 9,-0.0 9,-0.4 -0.250 50.5-173.2 -57.4 140.2 -4.3 14.6 4.5 8 8 A Q - 0 0 129 7,-0.1 23,-0.2 23,-0.1 7,-0.1 -0.974 28.2-113.7-143.0 125.0 -2.8 12.2 7.1 9 9 A C - 0 0 3 5,-0.6 23,-0.2 -2,-0.4 7,-0.0 -0.318 20.6-138.7 -56.9 127.4 -2.0 8.5 6.7 10 10 A G S S+ 0 0 54 21,-1.0 -1,-0.2 1,-0.2 22,-0.1 0.860 100.9 55.6 -56.2 -37.4 -4.3 6.5 8.9 11 11 A A S S- 0 0 63 1,-0.0 -1,-0.2 22,-0.0 21,-0.1 0.984 141.6 -18.3 -59.4 -62.4 -1.4 4.3 9.9 12 12 A C S S- 0 0 80 2,-0.0 -2,-0.1 0, 0.0 -1,-0.0 0.742 84.4-123.2-113.3 -49.2 0.8 7.0 11.2 13 13 A G + 0 0 14 2,-0.1 -3,-0.1 1,-0.0 19,-0.0 0.826 41.8 172.7 102.7 46.0 -0.5 10.3 9.8 14 14 A E - 0 0 131 1,-0.1 -5,-0.6 3,-0.0 2,-0.2 -0.136 39.3 -80.3 -76.7 177.4 2.5 11.8 7.9 15 15 A S - 0 0 73 -7,-0.1 2,-1.5 1,-0.1 -1,-0.1 -0.479 50.2 -95.0 -80.8 151.4 2.4 14.8 5.7 16 16 A Y + 0 0 142 -9,-0.4 2,-0.4 -2,-0.2 -1,-0.1 -0.485 59.5 168.9 -68.5 91.0 1.1 14.7 2.1 17 17 A A - 0 0 45 -2,-1.5 2,-1.1 1,-0.0 3,-0.2 -0.894 38.7-140.8-110.8 136.8 4.5 14.2 0.3 18 18 A A S S+ 0 0 111 -2,-0.4 -2,-0.1 1,-0.2 3,-0.1 -0.302 91.2 64.6 -88.3 51.0 4.9 13.3 -3.4 19 19 A D S S+ 0 0 135 -2,-1.1 -1,-0.2 0, 0.0 -3,-0.0 0.549 78.9 74.4-132.7 -57.6 7.8 11.0 -2.7 20 20 A E S S- 0 0 101 -3,-0.2 2,-0.7 1,-0.1 13,-0.0 -0.052 88.1-100.8 -59.1 166.3 6.8 8.0 -0.5 21 21 A F - 0 0 55 -3,-0.1 13,-3.1 0, 0.0 14,-0.3 -0.835 40.1-166.0 -98.1 110.2 4.8 5.1 -2.0 22 22 A W E -A 33 0A 54 -2,-0.7 11,-0.3 11,-0.3 2,-0.2 -0.631 11.1-132.9 -94.5 153.2 1.1 5.3 -1.1 23 23 A I E -A 32 0A 11 9,-1.3 9,-0.9 -2,-0.2 2,-0.5 -0.682 9.4-134.5-103.9 158.7 -1.4 2.5 -1.5 24 24 A C E -A 31 0A 95 -2,-0.2 26,-0.3 7,-0.1 2,-0.2 -0.956 16.8-157.2-117.7 124.3 -4.9 2.6 -3.0 25 25 A C - 0 0 3 5,-0.7 26,-0.2 -2,-0.5 25,-0.1 -0.566 12.0-159.1 -95.7 161.2 -7.9 0.9 -1.4 26 26 A D S S+ 0 0 93 24,-0.4 -1,-0.1 -2,-0.2 25,-0.1 0.763 87.7 47.2-105.7 -40.1 -11.1 -0.2 -3.0 27 27 A L S S+ 0 0 91 1,-0.1 24,-0.1 25,-0.0 -2,-0.0 1.000 139.8 0.7 -65.7 -70.9 -13.4 -0.4 0.0 28 28 A C S S- 0 0 55 24,-0.0 -1,-0.1 2,-0.0 -2,-0.0 0.720 85.7-147.8 -91.1 -25.5 -12.8 3.0 1.7 29 29 A E + 0 0 135 1,-0.1 -3,-0.1 -5,-0.0 2,-0.1 0.925 39.3 160.4 56.8 47.7 -10.2 4.1 -0.9 30 30 A M - 0 0 88 1,-0.1 -5,-0.7 -6,-0.0 2,-0.5 -0.192 44.3 -93.7 -88.9-175.6 -8.3 6.0 1.7 31 31 A W E +A 24 0A 116 -23,-0.2 -21,-1.0 -7,-0.1 2,-0.2 -0.909 55.1 146.4-108.1 122.4 -4.6 7.2 1.7 32 32 A F E -A 23 0A 6 -9,-0.9 -9,-1.3 -2,-0.5 2,-0.4 -0.817 43.5-102.7-141.2-179.9 -1.9 5.1 3.2 33 33 A H E >> -A 22 0A 7 -11,-0.3 4,-2.8 -2,-0.2 3,-0.5 -0.929 23.8-127.7-115.1 134.6 1.7 4.1 2.8 34 34 A G T 34>S+ 0 0 0 -13,-3.1 5,-2.7 -2,-0.4 3,-0.5 0.905 113.8 43.0 -39.3 -62.9 2.9 0.8 1.3 35 35 A K T >45S+ 0 0 110 -14,-0.3 3,-0.9 1,-0.3 -1,-0.3 0.834 114.5 53.4 -55.4 -33.7 5.2 -0.0 4.3 36 36 A C T <45S+ 0 0 41 -3,-0.5 -1,-0.3 1,-0.2 -2,-0.2 0.856 110.3 45.5 -70.3 -35.8 2.3 1.1 6.5 37 37 A V T 3<5S- 0 0 2 -4,-2.8 -1,-0.2 -3,-0.5 -2,-0.2 0.204 124.1-104.2 -91.8 15.2 -0.1 -1.2 4.8 38 38 A K T < 5S+ 0 0 166 -3,-0.9 2,-0.3 -5,-0.3 -3,-0.2 0.923 83.1 123.5 63.2 46.0 2.4 -4.0 5.0 39 39 A I < - 0 0 14 -5,-2.7 -1,-0.2 -6,-0.2 -2,-0.2 -0.996 57.2-126.3-140.0 143.9 3.3 -3.7 1.3 40 40 A T > - 0 0 65 -2,-0.3 4,-1.9 1,-0.1 -6,-0.0 -0.545 19.5-126.0 -88.1 153.2 6.5 -3.1 -0.6 41 41 A P T 4 S+ 0 0 94 0, 0.0 4,-0.2 0, 0.0 -1,-0.1 0.664 112.7 46.5 -69.7 -16.5 7.0 -0.4 -3.3 42 42 A A T >4 S+ 0 0 61 2,-0.1 3,-0.8 1,-0.1 4,-0.3 0.805 109.1 51.3 -93.7 -36.8 8.1 -3.0 -5.8 43 43 A R G >> S+ 0 0 144 1,-0.2 3,-2.5 2,-0.2 4,-1.1 0.873 89.5 79.6 -68.4 -38.2 5.3 -5.6 -5.1 44 44 A A G >< S+ 0 0 23 -4,-1.9 3,-0.8 1,-0.3 -1,-0.2 0.810 82.2 68.5 -37.4 -38.4 2.6 -2.9 -5.6 45 45 A E G <4 S+ 0 0 148 -3,-0.8 -1,-0.3 1,-0.3 -2,-0.2 0.904 104.5 39.5 -50.3 -46.9 3.2 -3.4 -9.3 46 46 A H G <4 S+ 0 0 141 -3,-2.5 2,-0.4 -4,-0.3 -1,-0.3 0.607 106.5 85.8 -79.3 -12.3 1.7 -6.9 -9.0 47 47 A I << - 0 0 49 -4,-1.1 2,-0.4 -3,-0.8 3,-0.1 -0.760 55.9-175.8 -94.3 135.0 -0.9 -5.5 -6.6 48 48 A K S S- 0 0 159 -2,-0.4 -3,-0.1 1,-0.1 -4,-0.0 -0.870 71.8 -17.1-134.2 100.9 -4.1 -4.0 -8.0 49 49 A Q S S- 0 0 117 -2,-0.4 -23,-0.2 -25,-0.1 -1,-0.1 0.965 81.6-159.3 71.6 55.0 -6.6 -2.4 -5.5 50 50 A Y - 0 0 60 -26,-0.3 2,-1.2 1,-0.1 -24,-0.4 -0.278 24.4-106.8 -65.3 151.1 -5.2 -4.1 -2.3 51 51 A K - 0 0 101 -26,-0.2 -1,-0.1 -25,-0.1 -26,-0.1 -0.671 39.4-134.0 -83.9 94.7 -7.5 -4.3 0.7 52 52 A C >> - 0 0 0 -2,-1.2 4,-2.2 1,-0.1 3,-0.7 0.063 17.3-114.1 -42.9 156.0 -6.0 -1.8 3.1 53 53 A P H 3> S+ 0 0 54 0, 0.0 4,-1.0 0, 0.0 -1,-0.1 0.676 112.2 69.6 -69.8 -17.7 -5.5 -2.9 6.7 54 54 A S H 34 S+ 0 0 69 2,-0.1 4,-0.4 3,-0.1 -2,-0.1 0.849 113.5 25.6 -69.2 -34.9 -8.2 -0.4 7.8 55 55 A C H X4 S+ 0 0 1 -3,-0.7 3,-2.1 2,-0.2 -1,-0.1 0.901 111.4 64.5 -92.8 -56.6 -10.9 -2.4 6.1 56 56 A S H 3< S+ 0 0 63 -4,-2.2 -2,-0.1 1,-0.3 -1,-0.1 0.802 98.4 62.3 -36.5 -37.2 -9.5 -5.9 6.1 57 57 A N T >< S+ 0 0 86 -4,-1.0 3,-0.7 -5,-0.2 -1,-0.3 0.922 81.5 98.4 -58.1 -46.6 -9.8 -5.6 9.9 58 58 A K T < S+ 0 0 121 -3,-2.1 6,-0.1 -4,-0.4 -3,-0.0 -0.060 91.6 16.3 -43.7 140.8 -13.5 -5.2 9.8 59 59 A S T 3 S+ 0 0 120 1,-0.2 -1,-0.3 2,-0.0 5,-0.2 0.872 95.9 162.8 58.6 38.3 -15.4 -8.4 10.5 60 60 A G < - 0 0 19 3,-1.4 -1,-0.2 -3,-0.7 -3,-0.1 -0.557 49.6-128.9 -90.7 155.0 -12.2 -9.9 12.0 61 61 A P S S+ 0 0 144 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.783 112.7 38.7 -69.7 -28.3 -12.0 -13.0 14.2 62 62 A S S S+ 0 0 106 1,-0.3 2,-0.3 -5,-0.1 -5,-0.0 0.742 135.1 12.3 -92.5 -28.4 -9.9 -11.0 16.8 63 63 A S 0 0 64 -6,-0.2 -3,-1.4 -5,-0.0 -1,-0.3 -0.881 360.0 360.0-154.9 117.4 -11.8 -7.8 16.4 64 64 A G 0 0 96 -2,-0.3 -6,-0.1 -5,-0.2 -7,-0.1 -0.635 360.0 360.0 -87.3 360.0 -15.2 -7.1 14.7